Wall clock time and date at job start Sat Apr 11 2020 06:21:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86799 * 120.00355 * 2 1 4 4 H 1.48495 * 109.47333 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46880 * 299.99369 * 3 2 1 6 6 H 1.48502 * 109.47239 * 59.99351 * 3 2 1 7 7 C 1.38813 * 119.99876 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00419 * 180.02562 * 7 2 1 9 9 N 1.36940 * 119.99906 * 0.02562 * 7 2 1 10 10 C 1.48165 * 126.39699 * 352.99784 * 9 7 2 11 11 C 1.55297 * 107.04064 * 184.96592 * 10 9 7 12 12 C 1.53696 * 101.84972 * 22.43607 * 11 10 9 13 13 H 1.08997 * 111.10714 * 78.60331 * 12 11 10 14 14 C 1.51975 * 115.01034 * 206.54135 * 12 11 10 15 15 C 1.53890 * 107.28706 * 175.45538 * 14 12 11 16 16 N 1.46599 * 110.70804 * 308.19103 * 15 14 12 17 17 C 1.34783 * 119.75006 * 227.74361 * 16 15 14 18 18 O 1.21592 * 119.99825 * 5.74669 * 17 16 15 19 19 C 1.47507 * 119.99900 * 185.74653 * 17 16 15 20 20 C 1.36883 * 120.60945 * 214.00593 * 19 17 16 21 21 C 1.40133 * 119.25892 * 179.97438 * 20 19 17 22 22 N 1.31141 * 120.46036 * 0.02562 * 21 20 19 23 23 C 1.33695 * 121.18898 * 359.97438 * 22 21 20 24 24 C 1.39062 * 132.56061 * 179.97438 * 23 22 21 25 25 C 1.38507 * 107.67019 * 179.97438 * 24 23 22 26 26 N 1.31519 * 109.03699 * 0.02562 * 25 24 23 27 27 N 1.37297 * 120.63613 * 359.73942 * 23 22 21 28 28 C 1.47870 * 119.95045 * 48.23944 * 16 15 14 29 29 C 1.45513 * 126.39705 * 172.96435 * 9 7 2 30 30 H 1.08993 * 109.56700 * 266.66304 * 29 9 7 31 31 H 0.97005 * 119.99596 * 0.02562 * 1 2 3 32 32 H 1.08997 * 109.91567 * 65.61895 * 10 9 7 33 33 H 1.09003 * 110.08522 * 304.41108 * 10 9 7 34 34 H 1.09000 * 110.95631 * 140.58455 * 11 10 9 35 35 H 1.08996 * 110.96373 * 264.28466 * 11 10 9 36 36 H 1.08994 * 109.89527 * 294.89597 * 14 12 11 37 37 H 1.09000 * 109.89458 * 56.01577 * 14 12 11 38 38 H 1.09002 * 109.22689 * 68.50223 * 15 14 12 39 39 H 1.08994 * 109.23140 * 187.87308 * 15 14 12 40 40 H 1.08003 * 120.37076 * 0.02562 * 20 19 17 41 41 H 1.08000 * 119.76986 * 179.97438 * 21 20 19 42 42 H 1.08002 * 126.16630 * 359.97438 * 24 23 22 43 43 H 1.08001 * 125.47732 * 179.97438 * 25 24 23 44 44 H 1.09001 * 109.56105 * 188.63005 * 28 16 15 45 45 H 1.09000 * 110.55851 * 67.07161 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8916 2.3963 -1.2126 6 1 1.8915 2.3965 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 -0.1393 -2.5575 0.1454 11 6 -0.4166 -4.0841 0.2109 12 6 0.9434 -4.6325 0.6712 13 1 1.0801 -4.4933 1.7436 14 6 1.2341 -6.0641 0.2523 15 6 2.6700 -6.3891 0.7004 16 7 3.6054 -5.3646 0.2264 17 6 4.7525 -5.7341 -0.3772 18 8 4.9607 -6.9070 -0.6209 19 6 5.7551 -4.7156 -0.7420 20 6 6.5185 -4.8614 -1.8688 21 6 7.4623 -3.8762 -2.1889 22 7 7.6143 -2.8259 -1.4185 23 6 6.8786 -2.6652 -0.3139 24 6 6.8413 -1.6679 0.6546 25 6 5.8760 -2.0199 1.5835 26 7 5.3365 -3.1655 1.2285 27 7 5.9362 -3.5985 0.0410 28 6 3.2929 -3.9326 0.4217 29 6 1.9005 -3.7171 -0.1424 30 1 1.8818 -4.0120 -1.1915 31 1 -0.4850 0.8401 -0.0004 32 1 -0.6501 -2.1238 -0.7143 33 1 -0.4828 -2.0780 1.0620 34 1 -1.1946 -4.3081 0.9407 35 1 -0.6822 -4.4747 -0.7715 36 1 0.5320 -6.7423 0.7370 37 1 1.1537 -6.1573 -0.8307 38 1 2.7054 -6.4314 1.7890 39 1 2.9623 -7.3575 0.2945 40 1 6.3943 -5.7256 -2.5046 41 1 8.0693 -3.9831 -3.0758 42 1 7.4544 -0.7792 0.6782 43 1 5.6100 -1.4462 2.4590 44 1 4.0151 -3.3239 -0.1224 45 1 3.3106 -3.6780 1.4814 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042090811.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:06 Heat of formation + Delta-G solvation = 160.573554 kcal Electronic energy + Delta-G solvation = -31435.938677 eV Core-core repulsion = 27458.282075 eV Total energy + Delta-G solvation = -3977.656602 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.52213 -40.17789 -38.65384 -37.84716 -35.37547 -34.32331 -32.94474 -31.38147 -31.08217 -29.54044 -29.09772 -28.53721 -26.05710 -24.55617 -23.89547 -23.34889 -22.71971 -21.49614 -20.13685 -20.04575 -19.15546 -18.51638 -17.40687 -16.96701 -16.77346 -16.34029 -15.87402 -15.26347 -15.05155 -14.83628 -14.42381 -14.26505 -13.97024 -13.73880 -13.57482 -13.31608 -13.20775 -13.03254 -12.78524 -12.42359 -12.13632 -12.00118 -11.70233 -11.39742 -11.26532 -11.07631 -10.92693 -10.78834 -10.74925 -10.62336 -10.13752 -9.98673 -9.88467 -9.83935 -9.69870 -9.55098 -9.42106 -8.68768 -8.52358 -7.88973 -6.89235 -5.77997 -3.11963 0.08611 0.78753 1.83738 2.42087 2.74389 2.84546 3.35390 3.37108 3.42290 3.43964 3.74879 3.92939 4.19053 4.46008 4.73412 4.90642 4.93477 4.98883 5.10003 5.12574 5.34595 5.35890 5.47011 5.54083 5.59439 5.65799 5.74297 5.75153 5.82252 5.93655 5.95392 6.06158 6.11636 6.16886 6.24290 6.28951 6.39061 6.52038 6.54627 6.60503 6.69378 6.99668 7.25022 7.40489 7.47548 7.48960 7.58159 7.74812 7.87322 8.17563 9.12964 9.76135 10.43881 11.34853 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009337 B = 0.006158 C = 0.004101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2998.197545 B = 4546.044803 C = 6825.740717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.004 4.004 3 Si 0.905 3.095 4 H -0.277 1.277 5 H -0.291 1.291 6 H -0.289 1.289 7 C -0.225 4.225 8 H 0.074 0.926 9 N -0.589 5.589 10 C 0.178 3.822 11 C -0.138 4.138 12 C -0.113 4.113 13 H 0.078 0.922 14 C -0.117 4.117 15 C 0.111 3.889 16 N -0.578 5.578 17 C 0.561 3.439 18 O -0.531 6.531 19 C 0.155 3.845 20 C -0.166 4.166 21 C 0.172 3.828 22 N -0.447 5.447 23 C 0.248 3.752 24 C -0.246 4.246 25 C 0.088 3.912 26 N -0.283 5.283 27 N -0.308 5.308 28 C 0.119 3.881 29 C 0.149 3.851 30 H 0.020 0.980 31 H 0.252 0.748 32 H 0.047 0.953 33 H 0.045 0.955 34 H 0.059 0.941 35 H 0.056 0.944 36 H 0.076 0.924 37 H 0.068 0.932 38 H 0.069 0.931 39 H 0.090 0.910 40 H 0.174 0.826 41 H 0.186 0.814 42 H 0.163 0.837 43 H 0.200 0.800 44 H 0.084 0.916 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.825 -10.359 -0.300 14.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.200 4.200 3 Si 0.735 3.265 4 H -0.202 1.202 5 H -0.218 1.218 6 H -0.216 1.216 7 C -0.354 4.354 8 H 0.092 0.908 9 N -0.314 5.314 10 C 0.054 3.946 11 C -0.176 4.176 12 C -0.133 4.133 13 H 0.097 0.903 14 C -0.156 4.156 15 C -0.011 4.011 16 N -0.308 5.308 17 C 0.346 3.654 18 O -0.408 6.408 19 C 0.036 3.964 20 C -0.192 4.192 21 C -0.013 4.013 22 N -0.158 5.158 23 C 0.022 3.978 24 C -0.277 4.277 25 C -0.089 4.089 26 N -0.107 5.107 27 N -0.083 5.083 28 C -0.004 4.004 29 C 0.040 3.960 30 H 0.037 0.963 31 H 0.063 0.937 32 H 0.065 0.935 33 H 0.063 0.937 34 H 0.078 0.922 35 H 0.075 0.925 36 H 0.094 0.906 37 H 0.086 0.914 38 H 0.087 0.913 39 H 0.109 0.891 40 H 0.191 0.809 41 H 0.203 0.797 42 H 0.181 0.819 43 H 0.217 0.783 44 H 0.102 0.898 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 9.494 -10.781 -0.006 14.365 hybrid contribution 0.358 1.158 -0.100 1.216 sum 9.852 -9.623 -0.107 13.772 Atomic orbital electron populations 1.69950 1.04894 1.25017 1.56694 1.24787 0.95646 0.97594 1.02010 0.86141 0.79040 0.83954 0.77341 1.20199 1.21752 1.21630 1.18953 0.90081 0.82204 1.44119 0.90792 1.44121 1.02570 0.99267 1.85407 1.21528 0.83851 0.88349 1.00881 1.22728 0.95593 0.99473 0.99817 1.22298 0.97392 0.93440 1.00149 0.90347 1.21790 0.94717 0.97420 1.01665 1.21704 0.88964 0.91371 0.99098 1.48254 1.18197 1.09215 1.55137 1.17533 0.81871 0.86978 0.79049 1.90820 1.78084 1.16762 1.55136 1.20599 0.97864 0.86135 0.91781 1.22030 0.97431 1.03204 0.96504 1.23349 0.93557 0.87093 0.97296 1.67918 1.22907 1.22415 1.02591 1.20700 0.90215 0.92177 0.94715 1.21028 1.07917 1.02162 0.96602 1.23990 0.92266 0.93588 0.99104 1.78530 1.19229 1.16902 0.96069 1.47538 1.26742 1.14936 1.19053 1.22611 0.97743 0.77007 1.03035 1.21123 0.91444 0.87772 0.95684 0.96284 0.93747 0.93471 0.93703 0.92181 0.92497 0.90553 0.91370 0.91303 0.89130 0.80884 0.79722 0.81941 0.78307 0.89838 0.88739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.45 10.50 55.49 0.58 -25.87 16 2 C 0.00 -0.10 5.49 -17.43 -0.10 -0.20 16 3 Si 0.90 21.73 29.55 -169.99 -5.02 16.70 16 4 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 6 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 7 C -0.23 -6.06 9.90 -15.06 -0.15 -6.21 16 8 H 0.07 1.97 7.38 -52.48 -0.39 1.58 16 9 N -0.59 -14.49 3.35 -162.87 -0.55 -15.04 16 10 C 0.18 4.21 5.43 -1.91 -0.01 4.20 16 11 C -0.14 -2.49 6.54 -25.15 -0.16 -2.66 16 12 C -0.11 -1.93 2.60 -89.49 -0.23 -2.16 16 13 H 0.08 1.38 8.12 -51.93 -0.42 0.96 16 14 C -0.12 -1.61 5.72 -26.79 -0.15 -1.77 16 15 C 0.11 1.54 6.34 -3.52 -0.02 1.52 16 16 N -0.58 -9.44 3.00 -173.92 -0.52 -9.96 16 17 C 0.56 9.17 7.45 -12.48 -0.09 9.08 16 18 O -0.53 -9.13 16.14 5.28 0.09 -9.04 16 19 C 0.15 2.36 5.97 -81.98 -0.49 1.87 16 20 C -0.17 -1.94 9.62 -39.36 -0.38 -2.32 16 21 C 0.17 1.82 11.26 -17.14 -0.19 1.62 16 22 N -0.45 -6.26 10.44 -12.24 -0.13 -6.39 16 23 C 0.25 3.93 7.93 -155.57 -1.23 2.70 16 24 C -0.25 -3.61 10.91 -39.18 -0.43 -4.04 16 25 C 0.09 1.29 11.94 -17.59 -0.21 1.08 16 26 N -0.28 -4.76 7.68 30.46 0.23 -4.52 16 27 N -0.31 -5.06 2.80 -8.87 -0.02 -5.08 16 28 C 0.12 2.20 3.39 -3.91 -0.01 2.19 16 29 C 0.15 3.04 2.79 -67.79 -0.19 2.85 16 30 H 0.02 0.43 7.93 -51.93 -0.41 0.02 16 31 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 32 H 0.05 1.24 7.44 -51.93 -0.39 0.85 16 33 H 0.04 1.16 7.61 -51.93 -0.40 0.76 16 34 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.06 0.98 8.12 -51.93 -0.42 0.56 16 36 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.07 0.97 7.98 -51.93 -0.41 0.56 16 38 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.09 1.23 6.92 -51.93 -0.36 0.87 16 40 H 0.17 1.54 7.98 -52.48 -0.42 1.13 16 41 H 0.19 1.05 8.06 -52.49 -0.42 0.62 16 42 H 0.16 2.00 8.06 -52.49 -0.42 1.58 16 43 H 0.20 2.28 8.06 -52.49 -0.42 1.86 16 44 H 0.08 1.68 4.17 -51.93 -0.22 1.47 16 45 H 0.09 1.84 7.05 -51.93 -0.37 1.48 16 LS Contribution 355.67 15.07 5.36 5.36 Total: -1.00 -32.97 355.67 -9.91 -42.88 By element: Atomic # 1 Polarization: 9.08 SS G_CDS: -5.87 Total: 3.21 kcal Atomic # 6 Polarization: 11.81 SS G_CDS: -4.06 Total: 7.76 kcal Atomic # 7 Polarization: -66.46 SS G_CDS: -0.40 Total: -66.87 kcal Atomic # 8 Polarization: -9.13 SS G_CDS: 0.09 Total: -9.04 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -32.97 -9.91 -42.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042090811.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 203.449 kcal (2) G-P(sol) polarization free energy of solvation -32.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 170.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.875 kcal (6) G-S(sol) free energy of system = (1) + (5) 160.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds