Wall clock time and date at job start Sat Apr 11 2020 06:21:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86801 * 120.00081 * 2 1 4 4 H 1.48507 * 109.47090 * 270.00219 * 3 2 1 5 5 H 1.48496 * 109.47259 * 29.99888 * 3 2 1 6 6 H 1.48494 * 109.47042 * 150.00353 * 3 2 1 7 7 C 1.38809 * 119.99719 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99949 * 179.97438 * 7 2 1 9 9 N 1.36935 * 119.99995 * 359.97438 * 7 2 1 10 10 C 1.48151 * 126.39848 * 0.02950 * 9 7 2 11 11 C 1.55298 * 107.04477 * 184.95938 * 10 9 7 12 12 C 1.53699 * 101.84612 * 22.43349 * 11 10 9 13 13 H 1.08998 * 111.10489 * 78.60665 * 12 11 10 14 14 C 1.51981 * 115.01143 * 206.54293 * 12 11 10 15 15 C 1.53885 * 107.28542 * 175.45348 * 14 12 11 16 16 N 1.46597 * 110.70938 * 308.18795 * 15 14 12 17 17 C 1.34782 * 119.74929 * 227.74239 * 16 15 14 18 18 O 1.21679 * 120.00260 * 355.71481 * 17 16 15 19 19 C 1.46812 * 119.99514 * 175.70897 * 17 16 15 20 20 C 1.40419 * 126.54168 * 49.67174 * 19 17 16 21 21 N 1.30967 * 108.76341 * 179.97438 * 20 19 17 22 22 N 1.39716 * 109.49320 * 359.97438 * 21 20 19 23 23 C 1.36352 * 133.19688 * 180.02562 * 22 21 20 24 24 C 1.35304 * 119.80463 * 179.31213 * 23 22 21 25 25 N 1.33245 * 121.27373 * 0.57709 * 24 23 22 26 26 C 1.31410 * 121.07634 * 359.63056 * 25 24 23 27 27 C 1.36828 * 107.96437 * 359.75683 * 22 21 20 28 28 C 1.47864 * 119.94811 * 48.24677 * 16 15 14 29 29 C 1.45514 * 126.39486 * 179.97438 * 9 7 2 30 30 H 1.08998 * 109.57057 * 266.67079 * 29 9 7 31 31 H 0.97000 * 119.99472 * 359.97438 * 1 2 3 32 32 H 1.09006 * 109.92312 * 65.61137 * 10 9 7 33 33 H 1.08998 * 110.09161 * 304.40234 * 10 9 7 34 34 H 1.09006 * 110.96280 * 140.57612 * 11 10 9 35 35 H 1.08996 * 110.96585 * 264.28261 * 11 10 9 36 36 H 1.08993 * 109.88933 * 294.89913 * 14 12 11 37 37 H 1.08997 * 109.89067 * 56.01092 * 14 12 11 38 38 H 1.09000 * 109.23026 * 68.50915 * 15 14 12 39 39 H 1.09005 * 109.22809 * 187.86970 * 15 14 12 40 40 H 1.07997 * 125.61711 * 359.97438 * 20 19 17 41 41 H 1.07997 * 120.09528 * 359.96438 * 23 22 21 42 42 H 1.07998 * 119.36078 * 180.18113 * 24 23 22 43 43 H 1.08001 * 120.17680 * 180.02562 * 26 25 24 44 44 H 1.09005 * 109.56492 * 188.62438 * 28 16 15 45 45 H 1.08999 * 110.56186 * 67.06711 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4478 2.6527 0.7000 6 1 3.5478 1.4401 0.6999 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0005 10 6 -0.1468 -2.5530 -0.0006 11 6 -0.4344 -4.0738 0.1278 12 6 0.8679 -4.5888 0.7611 13 1 0.8914 -4.3844 1.8315 14 6 1.1965 -6.0423 0.4626 15 6 2.5762 -6.3349 1.0782 16 7 3.5595 -5.3381 0.6439 17 6 4.7625 -5.7398 0.1879 18 8 5.0587 -6.9198 0.2105 19 6 5.7155 -4.7537 -0.3363 20 6 6.1107 -3.5593 0.2875 21 7 6.9729 -2.9462 -0.4845 22 7 7.1833 -3.7019 -1.6406 23 6 7.9655 -3.5229 -2.7431 24 6 7.9720 -4.4572 -3.7218 25 7 7.2172 -5.5520 -3.6381 26 6 6.4446 -5.7652 -2.5967 27 6 6.4115 -4.8284 -1.5548 28 6 3.2328 -3.8979 0.7181 29 6 1.9081 -3.7214 -0.0016 30 1 1.9988 -4.0794 -1.0271 31 1 -0.4849 0.8401 0.0004 32 1 -0.5630 -2.1739 -0.9340 33 1 -0.5834 -2.0200 0.8439 34 1 -1.2856 -4.2556 0.7840 35 1 -0.5965 -4.5241 -0.8515 36 1 0.4450 -6.6920 0.9111 37 1 1.2300 -6.2012 -0.6152 38 1 2.4968 -6.3111 2.1650 39 1 2.9065 -7.3252 0.7647 40 1 5.7612 -3.2048 1.2459 41 1 8.5858 -2.6432 -2.8300 42 1 8.5964 -4.3096 -4.5906 43 1 5.8390 -6.6579 -2.5437 44 1 4.0102 -3.3209 0.2170 45 1 3.1397 -3.5794 1.7563 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042095036.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:30 Heat of formation + Delta-G solvation = 128.849742 kcal Electronic energy + Delta-G solvation = -30491.366015 eV Core-core repulsion = 26512.333766 eV Total energy + Delta-G solvation = -3979.032249 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.66242 -40.09830 -38.55746 -38.04956 -35.19907 -33.93481 -33.01539 -31.55373 -31.48261 -29.75024 -29.10667 -28.37670 -25.14980 -24.97633 -24.18440 -23.69167 -22.45094 -21.77377 -20.19268 -19.85658 -19.24634 -18.28264 -17.64691 -16.81169 -16.73010 -16.23551 -15.91397 -15.44089 -15.18332 -14.95460 -14.75755 -14.41281 -14.05384 -13.72078 -13.65589 -13.28877 -13.17901 -13.14715 -12.92549 -12.55176 -12.13631 -11.95388 -11.62877 -11.34876 -11.31475 -11.08504 -10.91925 -10.84836 -10.71580 -10.28027 -10.23160 -10.09708 -9.98437 -9.88091 -9.82635 -9.68340 -9.43850 -8.68607 -8.48444 -8.00293 -6.91402 -5.77973 -3.12045 0.20053 0.65150 1.74597 2.08704 2.81538 3.09099 3.34938 3.35208 3.41290 3.42300 3.85352 3.95122 4.04386 4.43128 4.57328 4.70728 4.77927 4.94175 5.00813 5.15587 5.16838 5.20598 5.33193 5.38048 5.56438 5.60568 5.71524 5.77578 5.83965 5.86425 5.98699 6.01281 6.06083 6.11560 6.22452 6.24458 6.28144 6.45185 6.56337 6.63294 6.76284 7.00864 7.11148 7.33731 7.46148 7.55195 7.56435 7.75746 8.17079 8.28992 9.12253 9.75761 10.43204 11.34117 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009607 B = 0.004660 C = 0.003484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2913.873420 B = 6007.211831 C = 8035.913315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.003 4.003 3 Si 0.907 3.093 4 H -0.290 1.290 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.230 4.230 8 H 0.077 0.923 9 N -0.592 5.592 10 C 0.178 3.822 11 C -0.139 4.139 12 C -0.113 4.113 13 H 0.078 0.922 14 C -0.118 4.118 15 C 0.114 3.886 16 N -0.597 5.597 17 C 0.599 3.401 18 O -0.549 6.549 19 C -0.261 4.261 20 C 0.118 3.882 21 N -0.296 5.296 22 N -0.250 5.250 23 C 0.070 3.930 24 C 0.021 3.979 25 N -0.445 5.445 26 C 0.165 3.835 27 C 0.085 3.915 28 C 0.104 3.896 29 C 0.156 3.844 30 H 0.025 0.975 31 H 0.253 0.747 32 H 0.037 0.963 33 H 0.056 0.944 34 H 0.059 0.941 35 H 0.055 0.945 36 H 0.073 0.927 37 H 0.067 0.933 38 H 0.063 0.937 39 H 0.088 0.912 40 H 0.206 0.794 41 H 0.182 0.818 42 H 0.185 0.815 43 H 0.188 0.812 44 H 0.085 0.915 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.241 -10.796 -1.998 15.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.200 4.200 3 Si 0.737 3.263 4 H -0.217 1.217 5 H -0.216 1.216 6 H -0.206 1.206 7 C -0.358 4.358 8 H 0.094 0.906 9 N -0.317 5.317 10 C 0.053 3.947 11 C -0.177 4.177 12 C -0.132 4.132 13 H 0.096 0.904 14 C -0.157 4.157 15 C -0.008 4.008 16 N -0.329 5.329 17 C 0.386 3.614 18 O -0.428 6.428 19 C -0.279 4.279 20 C -0.060 4.060 21 N -0.119 5.119 22 N -0.018 5.018 23 C -0.058 4.058 24 C -0.121 4.121 25 N -0.156 5.156 26 C -0.015 4.015 27 C -0.037 4.037 28 C -0.019 4.019 29 C 0.047 3.953 30 H 0.042 0.958 31 H 0.063 0.937 32 H 0.055 0.945 33 H 0.074 0.926 34 H 0.078 0.922 35 H 0.074 0.926 36 H 0.092 0.908 37 H 0.085 0.915 38 H 0.082 0.918 39 H 0.107 0.893 40 H 0.223 0.777 41 H 0.199 0.801 42 H 0.202 0.798 43 H 0.204 0.796 44 H 0.103 0.897 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 11.232 -10.506 -2.787 15.630 hybrid contribution -0.143 1.230 0.741 1.443 sum 11.089 -9.276 -2.045 14.601 Atomic orbital electron populations 1.69942 1.04871 1.25106 1.56625 1.24765 0.95639 0.97565 1.02049 0.86201 0.78722 0.83747 0.77614 1.21689 1.21595 1.20565 1.18946 0.90203 0.82294 1.44323 0.90551 1.44160 1.01697 0.99098 1.86760 1.21533 0.83588 0.88571 1.00974 1.22733 0.96107 0.99532 0.99318 1.22296 0.97220 0.93571 1.00146 0.90372 1.21801 0.95475 0.97140 1.01288 1.21582 0.88161 0.92341 0.98714 1.48120 1.13639 1.08008 1.63104 1.16954 0.80763 0.86726 0.76924 1.90767 1.77129 1.17625 1.57283 1.19703 1.09560 1.01008 0.97633 1.24265 0.91893 0.90648 0.99207 1.77733 1.24133 1.17173 0.92897 1.46177 1.27020 1.14479 1.14092 1.22649 0.95622 1.02857 0.84711 1.22378 1.00627 0.89974 0.99122 1.68213 1.04648 1.19874 1.22829 1.23058 0.95221 0.97393 0.85843 1.20249 0.95342 0.90421 0.97729 1.22099 0.99585 0.78547 1.01687 1.20989 0.91043 0.87683 0.95603 0.95770 0.93693 0.94520 0.92601 0.92208 0.92582 0.90808 0.91468 0.91834 0.89341 0.77743 0.80131 0.79765 0.79555 0.89670 0.90464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.11 10.44 55.49 0.58 -25.53 16 2 C 0.00 -0.09 5.49 -17.43 -0.10 -0.19 16 3 Si 0.91 21.54 29.55 -169.99 -5.02 16.52 16 4 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.23 -6.01 9.88 -15.06 -0.15 -6.16 16 8 H 0.08 1.93 7.43 -52.49 -0.39 1.54 16 9 N -0.59 -14.13 3.35 -162.87 -0.55 -14.67 16 10 C 0.18 4.11 5.45 -1.92 -0.01 4.10 16 11 C -0.14 -2.45 6.54 -25.15 -0.16 -2.61 16 12 C -0.11 -1.84 2.60 -89.48 -0.23 -2.07 16 13 H 0.08 1.31 8.12 -51.93 -0.42 0.88 16 14 C -0.12 -1.56 5.72 -26.79 -0.15 -1.72 16 15 C 0.11 1.51 6.30 -3.53 -0.02 1.49 16 16 N -0.60 -8.95 3.00 -174.17 -0.52 -9.47 16 17 C 0.60 9.42 7.54 -12.79 -0.10 9.32 16 18 O -0.55 -9.61 16.47 5.21 0.09 -9.53 16 19 C -0.26 -3.91 5.16 -104.75 -0.54 -4.45 16 20 C 0.12 1.68 9.56 -17.10 -0.16 1.52 16 21 N -0.30 -4.42 12.60 30.76 0.39 -4.03 16 22 N -0.25 -3.41 3.91 -10.50 -0.04 -3.45 16 23 C 0.07 0.69 11.25 -16.59 -0.19 0.51 16 24 C 0.02 0.18 11.07 -17.98 -0.20 -0.01 16 25 N -0.44 -5.15 10.44 -13.26 -0.14 -5.29 16 26 C 0.16 2.07 11.31 -17.01 -0.19 1.88 16 27 C 0.08 1.21 6.81 -84.06 -0.57 0.63 16 28 C 0.10 1.72 5.06 -3.91 -0.02 1.70 16 29 C 0.16 3.00 2.79 -67.78 -0.19 2.81 16 30 H 0.02 0.52 7.93 -51.93 -0.41 0.11 16 31 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 32 H 0.04 0.95 7.77 -51.93 -0.40 0.54 16 33 H 0.06 1.43 7.21 -51.93 -0.37 1.06 16 34 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.06 0.95 8.12 -51.93 -0.42 0.52 16 36 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.07 0.93 7.98 -51.93 -0.41 0.51 16 38 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.09 1.17 6.99 -51.93 -0.36 0.81 16 40 H 0.21 2.42 7.57 -52.49 -0.40 2.02 16 41 H 0.18 1.16 8.06 -52.49 -0.42 0.74 16 42 H 0.19 0.93 8.06 -52.49 -0.42 0.50 16 43 H 0.19 2.09 8.06 -52.49 -0.42 1.67 16 44 H 0.09 1.45 4.37 -51.93 -0.23 1.23 16 45 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 LS Contribution 362.15 15.07 5.46 5.46 Total: -1.00 -32.83 362.15 -8.67 -41.50 By element: Atomic # 1 Polarization: 7.67 SS G_CDS: -5.92 Total: 1.75 kcal Atomic # 6 Polarization: 9.72 SS G_CDS: -2.99 Total: 6.74 kcal Atomic # 7 Polarization: -62.16 SS G_CDS: -0.28 Total: -62.44 kcal Atomic # 8 Polarization: -9.61 SS G_CDS: 0.09 Total: -9.53 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -32.83 -8.67 -41.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042095036.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.352 kcal (2) G-P(sol) polarization free energy of solvation -32.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 137.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.502 kcal (6) G-S(sol) free energy of system = (1) + (5) 128.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds