Wall clock time and date at job start Sat Apr 11 2020 06:21:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86801 * 120.00081 * 2 1 4 4 H 1.48507 * 109.47090 * 270.00219 * 3 2 1 5 5 H 1.48496 * 109.47259 * 29.99888 * 3 2 1 6 6 H 1.48494 * 109.47042 * 150.00353 * 3 2 1 7 7 C 1.38809 * 119.99719 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99949 * 179.97438 * 7 2 1 9 9 N 1.36935 * 119.99995 * 359.97438 * 7 2 1 10 10 C 1.48151 * 126.39848 * 0.02950 * 9 7 2 11 11 C 1.55298 * 107.04477 * 184.95938 * 10 9 7 12 12 C 1.53699 * 101.84612 * 22.43349 * 11 10 9 13 13 H 1.08998 * 111.10489 * 78.60665 * 12 11 10 14 14 C 1.51981 * 115.01143 * 206.54293 * 12 11 10 15 15 C 1.53885 * 107.28542 * 175.45348 * 14 12 11 16 16 N 1.46597 * 110.70938 * 308.18795 * 15 14 12 17 17 C 1.34782 * 119.74929 * 227.74239 * 16 15 14 18 18 O 1.21679 * 120.00260 * 355.71481 * 17 16 15 19 19 C 1.46812 * 119.99514 * 175.70897 * 17 16 15 20 20 C 1.40419 * 126.54168 * 49.67174 * 19 17 16 21 21 N 1.30967 * 108.76341 * 179.97438 * 20 19 17 22 22 N 1.39716 * 109.49320 * 359.97438 * 21 20 19 23 23 C 1.36352 * 133.19688 * 180.02562 * 22 21 20 24 24 C 1.35304 * 119.80463 * 179.31213 * 23 22 21 25 25 N 1.33245 * 121.27373 * 0.57709 * 24 23 22 26 26 C 1.31410 * 121.07634 * 359.63056 * 25 24 23 27 27 C 1.36828 * 107.96437 * 359.75683 * 22 21 20 28 28 C 1.47864 * 119.94811 * 48.24677 * 16 15 14 29 29 C 1.45514 * 126.39486 * 179.97438 * 9 7 2 30 30 H 1.08998 * 109.57057 * 266.67079 * 29 9 7 31 31 H 0.97000 * 119.99472 * 359.97438 * 1 2 3 32 32 H 1.09006 * 109.92312 * 65.61137 * 10 9 7 33 33 H 1.08998 * 110.09161 * 304.40234 * 10 9 7 34 34 H 1.09006 * 110.96280 * 140.57612 * 11 10 9 35 35 H 1.08996 * 110.96585 * 264.28261 * 11 10 9 36 36 H 1.08993 * 109.88933 * 294.89913 * 14 12 11 37 37 H 1.08997 * 109.89067 * 56.01092 * 14 12 11 38 38 H 1.09000 * 109.23026 * 68.50915 * 15 14 12 39 39 H 1.09005 * 109.22809 * 187.86970 * 15 14 12 40 40 H 1.07997 * 125.61711 * 359.97438 * 20 19 17 41 41 H 1.07997 * 120.09528 * 359.96438 * 23 22 21 42 42 H 1.07998 * 119.36078 * 180.18113 * 24 23 22 43 43 H 1.08001 * 120.17680 * 180.02562 * 26 25 24 44 44 H 1.09005 * 109.56492 * 188.62438 * 28 16 15 45 45 H 1.08999 * 110.56186 * 67.06711 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4478 2.6527 0.7000 6 1 3.5478 1.4401 0.6999 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0005 10 6 -0.1468 -2.5530 -0.0006 11 6 -0.4344 -4.0738 0.1278 12 6 0.8679 -4.5888 0.7611 13 1 0.8914 -4.3844 1.8315 14 6 1.1965 -6.0423 0.4626 15 6 2.5762 -6.3349 1.0782 16 7 3.5595 -5.3381 0.6439 17 6 4.7625 -5.7398 0.1879 18 8 5.0587 -6.9198 0.2105 19 6 5.7155 -4.7537 -0.3363 20 6 6.1107 -3.5593 0.2875 21 7 6.9729 -2.9462 -0.4845 22 7 7.1833 -3.7019 -1.6406 23 6 7.9655 -3.5229 -2.7431 24 6 7.9720 -4.4572 -3.7218 25 7 7.2172 -5.5520 -3.6381 26 6 6.4446 -5.7652 -2.5967 27 6 6.4115 -4.8284 -1.5548 28 6 3.2328 -3.8979 0.7181 29 6 1.9081 -3.7214 -0.0016 30 1 1.9988 -4.0794 -1.0271 31 1 -0.4849 0.8401 0.0004 32 1 -0.5630 -2.1739 -0.9340 33 1 -0.5834 -2.0200 0.8439 34 1 -1.2856 -4.2556 0.7840 35 1 -0.5965 -4.5241 -0.8515 36 1 0.4450 -6.6920 0.9111 37 1 1.2300 -6.2012 -0.6152 38 1 2.4968 -6.3111 2.1650 39 1 2.9065 -7.3252 0.7647 40 1 5.7612 -3.2048 1.2459 41 1 8.5858 -2.6432 -2.8300 42 1 8.5964 -4.3096 -4.5906 43 1 5.8390 -6.6579 -2.5437 44 1 4.0102 -3.3209 0.2170 45 1 3.1397 -3.5794 1.7563 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042095036.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:28 Heat of formation + Delta-G solvation = 107.719267 kcal Electronic energy + Delta-G solvation = -30492.282302 eV Core-core repulsion = 26512.333766 eV Total energy + Delta-G solvation = -3979.948535 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -43.64440 -41.36562 -39.74044 -39.23261 -36.66270 -34.99578 -34.54806 -33.04358 -32.52025 -31.07564 -30.45685 -29.83992 -26.64542 -25.99431 -25.65434 -24.87249 -23.60825 -22.96207 -21.77324 -21.33271 -20.42337 -19.33546 -18.73091 -18.39976 -17.89141 -17.30467 -17.06309 -16.74191 -16.48931 -16.18248 -15.95009 -15.81607 -15.64235 -15.05122 -14.91705 -14.60346 -14.35025 -14.07802 -14.01333 -13.79165 -13.73594 -13.46451 -13.10471 -13.06288 -12.74631 -12.49983 -12.40846 -12.15249 -12.02902 -11.91488 -11.77231 -11.52034 -11.30363 -11.25195 -11.13130 -10.98114 -10.79102 -10.70014 -9.71546 -8.97505 -8.88408 -7.83660 -5.18215 -0.71039 -0.29620 0.82969 0.99609 1.45240 1.45552 1.54124 1.67582 2.03974 2.32700 2.49988 2.88729 3.09699 3.19742 3.35697 3.44684 3.59473 3.69529 3.89942 3.96195 3.98351 4.05389 4.15757 4.27519 4.32440 4.33925 4.40681 4.45357 4.54538 4.64066 4.72470 4.89077 4.94083 4.97227 4.98100 5.04909 5.14931 5.17085 5.20866 5.35451 5.44722 5.54204 5.62630 5.69326 5.81225 6.09625 6.19843 6.30099 6.46137 7.08520 7.09838 7.78765 8.46958 9.27674 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009607 B = 0.004660 C = 0.003484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2913.873420 B = 6007.211831 C = 8035.913315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.062 4.062 3 Si 0.965 3.035 4 H -0.293 1.293 5 H -0.295 1.295 6 H -0.266 1.266 7 C -0.228 4.228 8 H 0.083 0.917 9 N -0.610 5.610 10 C 0.182 3.818 11 C -0.124 4.124 12 C -0.098 4.098 13 H 0.080 0.920 14 C -0.107 4.107 15 C 0.111 3.889 16 N -0.594 5.594 17 C 0.603 3.397 18 O -0.570 6.570 19 C -0.291 4.291 20 C 0.117 3.883 21 N -0.322 5.322 22 N -0.254 5.254 23 C 0.065 3.935 24 C 0.030 3.970 25 N -0.447 5.447 26 C 0.146 3.854 27 C 0.076 3.924 28 C 0.118 3.882 29 C 0.148 3.852 30 H 0.008 0.992 31 H 0.245 0.755 32 H -0.003 1.003 33 H 0.024 0.976 34 H 0.083 0.917 35 H 0.065 0.935 36 H 0.107 0.893 37 H 0.062 0.938 38 H 0.081 0.919 39 H 0.092 0.908 40 H 0.220 0.780 41 H 0.217 0.783 42 H 0.231 0.769 43 H 0.191 0.809 44 H 0.079 0.921 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.876 -11.956 -2.316 17.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.255 4.255 3 Si 0.794 3.206 4 H -0.221 1.221 5 H -0.222 1.222 6 H -0.190 1.190 7 C -0.357 4.357 8 H 0.101 0.899 9 N -0.335 5.335 10 C 0.057 3.943 11 C -0.162 4.162 12 C -0.118 4.118 13 H 0.099 0.901 14 C -0.145 4.145 15 C -0.011 4.011 16 N -0.325 5.325 17 C 0.392 3.608 18 O -0.451 6.451 19 C -0.309 4.309 20 C -0.061 4.061 21 N -0.146 5.146 22 N -0.021 5.021 23 C -0.063 4.063 24 C -0.112 4.112 25 N -0.158 5.158 26 C -0.032 4.032 27 C -0.047 4.047 28 C -0.005 4.005 29 C 0.040 3.960 30 H 0.025 0.975 31 H 0.054 0.946 32 H 0.015 0.985 33 H 0.042 0.958 34 H 0.102 0.898 35 H 0.084 0.916 36 H 0.125 0.875 37 H 0.080 0.920 38 H 0.100 0.900 39 H 0.111 0.889 40 H 0.236 0.764 41 H 0.234 0.766 42 H 0.247 0.753 43 H 0.208 0.792 44 H 0.097 0.903 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 12.874 -11.712 -3.085 17.675 hybrid contribution -0.531 1.573 0.655 1.785 sum 12.343 -10.138 -2.430 16.157 Atomic orbital electron populations 1.70152 1.06169 1.25047 1.58494 1.25503 0.96398 1.00556 1.03018 0.85270 0.78063 0.80074 0.77166 1.22100 1.22156 1.19032 1.19305 0.90737 0.83361 1.42331 0.89929 1.44402 1.02317 1.00317 1.86452 1.21326 0.83258 0.92148 0.97566 1.22607 0.97769 0.95150 1.00693 1.22230 0.94882 0.95067 0.99588 0.90123 1.21750 0.96295 0.95101 1.01338 1.21758 0.87558 0.91926 0.99808 1.48102 1.13929 1.07500 1.63013 1.17022 0.80882 0.86523 0.76385 1.90744 1.77596 1.18486 1.58249 1.19703 1.10880 1.01650 0.98691 1.24494 0.91583 0.90339 0.99651 1.77652 1.25132 1.18036 0.93754 1.46472 1.27049 1.14056 1.14516 1.23490 0.95037 1.04296 0.83479 1.23193 0.99618 0.88439 0.99919 1.68253 1.04419 1.20939 1.22231 1.23137 0.96345 0.97659 0.86055 1.20470 0.95347 0.90946 0.97916 1.21816 0.97759 0.79618 1.01312 1.21117 0.93504 0.85919 0.95486 0.97459 0.94554 0.98481 0.95781 0.89835 0.91597 0.87455 0.91973 0.90045 0.88941 0.76401 0.76602 0.75289 0.79176 0.90326 0.89985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.04 10.44 21.65 0.23 -55.82 16 2 C -0.06 -3.41 5.49 84.86 0.47 -2.95 16 3 Si 0.97 44.99 29.55 68.60 2.03 47.02 16 4 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 5 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 6 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 7 C -0.23 -12.15 9.88 84.03 0.83 -11.32 16 8 H 0.08 4.19 7.43 -2.91 -0.02 4.16 16 9 N -0.61 -29.65 3.35 -669.19 -2.24 -31.89 16 10 C 0.18 8.67 5.45 86.85 0.47 9.14 16 11 C -0.12 -4.25 6.54 31.62 0.21 -4.04 16 12 C -0.10 -3.03 2.60 -10.06 -0.03 -3.06 16 13 H 0.08 2.50 8.12 -2.39 -0.02 2.48 16 14 C -0.11 -2.50 5.72 30.56 0.17 -2.33 16 15 C 0.11 2.67 6.30 86.66 0.55 3.22 16 16 N -0.59 -17.15 3.00 -823.16 -2.47 -19.63 16 17 C 0.60 18.71 7.54 86.48 0.65 19.36 16 18 O -0.57 -19.69 16.47 -4.28 -0.07 -19.76 16 19 C -0.29 -8.72 5.16 -19.95 -0.10 -8.82 16 20 C 0.12 3.31 9.56 85.35 0.82 4.13 16 21 N -0.32 -9.42 12.60 -56.59 -0.71 -10.14 16 22 N -0.25 -6.61 3.91 -187.14 -0.73 -7.34 16 23 C 0.07 1.12 11.25 83.31 0.94 2.05 16 24 C 0.03 0.45 11.07 83.80 0.93 1.38 16 25 N -0.45 -9.49 10.44 -195.86 -2.05 -11.54 16 26 C 0.15 3.58 11.31 85.22 0.96 4.54 16 27 C 0.08 2.14 6.81 39.39 0.27 2.41 16 28 C 0.12 3.85 5.06 85.72 0.43 4.28 16 29 C 0.15 5.63 2.79 45.62 0.13 5.76 16 30 H 0.01 0.33 7.93 -2.39 -0.02 0.31 16 31 H 0.25 14.20 8.31 -92.71 -0.77 13.43 16 32 H 0.00 -0.17 7.77 -2.38 -0.02 -0.19 16 33 H 0.02 1.28 7.21 -2.39 -0.02 1.26 16 34 H 0.08 2.48 8.14 -2.38 -0.02 2.47 16 35 H 0.07 2.13 8.12 -2.39 -0.02 2.11 16 36 H 0.11 1.90 8.14 -2.39 -0.02 1.88 16 37 H 0.06 1.56 7.98 -2.39 -0.02 1.54 16 38 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 39 H 0.09 2.23 6.99 -2.38 -0.02 2.21 16 40 H 0.22 5.13 7.57 -2.91 -0.02 5.11 16 41 H 0.22 1.97 8.06 -2.91 -0.02 1.94 16 42 H 0.23 1.18 8.06 -2.91 -0.02 1.16 16 43 H 0.19 4.29 8.06 -2.91 -0.02 4.26 16 44 H 0.08 2.68 4.37 -2.38 -0.01 2.67 16 45 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 Total: -1.00 -74.06 362.15 2.69 -71.36 By element: Atomic # 1 Polarization: 12.95 SS G_CDS: 1.02 Total: 13.97 kcal Atomic # 6 Polarization: 16.06 SS G_CDS: 7.69 Total: 23.75 kcal Atomic # 7 Polarization: -128.37 SS G_CDS: -7.98 Total: -136.35 kcal Atomic # 8 Polarization: -19.69 SS G_CDS: -0.07 Total: -19.76 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.02 kcal Total: -74.06 2.69 -71.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042095036.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 179.081 kcal (2) G-P(sol) polarization free energy of solvation -74.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.362 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds