Wall clock time and date at job start Sat Apr 11 2020 06:21:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 120.00052 * 2 1 4 4 H 1.48501 * 109.47226 * 270.00122 * 3 2 1 5 5 H 1.48499 * 109.47162 * 30.00197 * 3 2 1 6 6 H 1.48501 * 109.46956 * 149.99923 * 3 2 1 7 7 C 1.38815 * 119.99941 * 180.02562 * 2 1 3 8 8 H 1.07989 * 119.99876 * 179.97438 * 7 2 1 9 9 N 1.36943 * 119.99711 * 359.97438 * 7 2 1 10 10 C 1.48154 * 126.39910 * 359.97438 * 9 7 2 11 11 C 1.55300 * 107.04096 * 185.02586 * 10 9 7 12 12 C 1.53549 * 101.84507 * 22.46485 * 11 10 9 13 13 H 1.08998 * 111.71058 * 78.84351 * 12 11 10 14 14 C 1.51971 * 115.06238 * 206.60800 * 12 11 10 15 15 C 1.53895 * 107.35590 * 175.39959 * 14 12 11 16 16 N 1.46602 * 110.70739 * 308.14899 * 15 14 12 17 17 C 1.34771 * 119.75377 * 227.74492 * 16 15 14 18 18 O 1.21445 * 120.00240 * 356.24211 * 17 16 15 19 19 C 1.48632 * 119.99923 * 176.24211 * 17 16 15 20 20 N 1.33509 * 120.60889 * 38.80525 * 19 17 16 21 21 C 1.30804 * 122.65991 * 179.97438 * 20 19 17 22 22 N 1.34049 * 123.37957 * 359.97438 * 21 20 19 23 23 H 0.97000 * 120.21177 * 179.97438 * 22 21 20 24 24 C 1.36865 * 119.57332 * 0.02562 * 22 21 20 25 25 N 1.31637 * 135.96010 * 180.02562 * 24 22 21 26 26 C 1.33531 * 110.83330 * 179.97438 * 25 24 22 27 27 C 1.36067 * 110.92650 * 0.02562 * 26 25 24 28 28 C 1.39539 * 120.60208 * 218.52883 * 19 17 16 29 29 C 1.47802 * 120.48960 * 47.72342 * 16 15 14 30 30 C 1.45504 * 126.39515 * 179.97438 * 9 7 2 31 31 H 1.08997 * 109.56961 * 265.82939 * 30 9 7 32 32 H 0.97001 * 119.99613 * 359.97438 * 1 2 3 33 33 H 1.09005 * 109.91912 * 304.37206 * 10 9 7 34 34 H 1.08995 * 109.92285 * 65.47238 * 10 9 7 35 35 H 1.09001 * 110.95876 * 140.57593 * 11 10 9 36 36 H 1.09005 * 110.95494 * 264.27717 * 11 10 9 37 37 H 1.08998 * 109.89398 * 55.91802 * 14 12 11 38 38 H 1.08998 * 109.89761 * 294.88045 * 14 12 11 39 39 H 1.08996 * 109.22956 * 68.45984 * 15 14 12 40 40 H 1.08997 * 109.23034 * 187.87404 * 15 14 12 41 41 H 1.07998 * 118.30641 * 179.97438 * 21 20 19 42 42 H 1.08001 * 124.53018 * 180.02562 * 26 25 24 43 43 H 1.08009 * 126.71786 * 180.02562 * 27 26 25 44 44 H 1.09006 * 110.06104 * 67.98130 * 29 16 15 45 45 H 1.08996 * 110.06091 * 189.54477 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4401 0.7001 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1468 -2.5531 0.0005 11 6 -0.4342 -4.0738 0.1301 12 6 0.8670 -4.5877 0.7630 13 1 0.8992 -4.3911 1.8346 14 6 1.1977 -6.0408 0.4651 15 6 2.5781 -6.3327 1.0796 16 7 3.5608 -5.3359 0.6439 17 6 4.7634 -5.7376 0.1869 18 8 5.0556 -6.9162 0.2009 19 6 5.7320 -4.7379 -0.3342 20 7 5.8659 -3.5485 0.2572 21 6 6.7056 -2.6397 -0.1671 22 7 7.5067 -2.8135 -1.2277 23 1 8.1125 -2.1076 -1.5027 24 6 7.4636 -3.9930 -1.9207 25 7 8.0793 -4.4976 -2.9691 26 6 7.6417 -5.7323 -3.2281 27 6 6.6876 -6.1074 -2.3335 28 6 6.5223 -5.0277 -1.4472 29 6 3.2423 -3.8938 0.7015 30 6 1.9081 -3.7214 -0.0016 31 1 1.9850 -4.0854 -1.0261 32 1 -0.4849 0.8401 0.0004 33 1 -0.5797 -2.0199 0.8470 34 1 -0.5640 -2.1713 -0.9312 35 1 -1.2849 -4.2552 0.7871 36 1 -0.5970 -4.5246 -0.8489 37 1 1.2303 -6.2003 -0.6126 38 1 0.4470 -6.6915 0.9136 39 1 2.4997 -6.3082 2.1665 40 1 2.9086 -7.3228 0.7658 41 1 6.7560 -1.7010 0.3646 42 1 7.9976 -6.3503 -4.0392 43 1 6.1635 -7.0514 -2.3061 44 1 3.1631 -3.5695 1.7392 45 1 4.0128 -3.3198 0.1869 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042133590.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:50 Heat of formation + Delta-G solvation = 93.043731 kcal Electronic energy + Delta-G solvation = -30607.387419 eV Core-core repulsion = 26626.802505 eV Total energy + Delta-G solvation = -3980.584914 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -43.04344 -41.44096 -39.82181 -39.69198 -36.78298 -36.26620 -34.64620 -32.99034 -31.66625 -30.89607 -30.26268 -30.01288 -27.23960 -26.23346 -25.21090 -24.45586 -23.57242 -22.28180 -21.75962 -21.47840 -20.61511 -19.55204 -19.03076 -18.55978 -17.96133 -17.57701 -17.10256 -16.89545 -16.59363 -16.23847 -15.82968 -15.65118 -15.52846 -15.02785 -14.82593 -14.57075 -14.22903 -14.01331 -13.89341 -13.75747 -13.50152 -13.46395 -13.09778 -13.03544 -12.71977 -12.65011 -12.49009 -12.05601 -11.95286 -11.83486 -11.76432 -11.53708 -11.36548 -11.31703 -10.89661 -10.66991 -10.57889 -9.84716 -9.69619 -9.03960 -8.86022 -7.77565 -5.13493 -1.34204 0.33532 1.21658 1.29635 1.50625 1.53540 1.61853 1.64440 2.21589 2.35371 2.53995 2.68922 2.94627 3.40255 3.43135 3.50795 3.61926 3.85738 3.94663 3.99036 4.02408 4.20085 4.28224 4.34955 4.37335 4.40195 4.53420 4.62744 4.74578 4.78741 4.87178 4.92744 4.96739 5.08750 5.12316 5.14165 5.18522 5.34437 5.41230 5.52928 5.58273 5.60377 5.68918 5.81784 5.90452 6.08880 6.23952 6.40333 6.78665 6.82871 7.12592 7.82686 8.51631 9.34237 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009978 B = 0.004762 C = 0.003507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2805.449984 B = 5877.883079 C = 7981.627293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.069 4.069 3 Si 0.971 3.029 4 H -0.295 1.295 5 H -0.304 1.304 6 H -0.249 1.249 7 C -0.228 4.228 8 H 0.093 0.907 9 N -0.609 5.609 10 C 0.182 3.818 11 C -0.124 4.124 12 C -0.100 4.100 13 H 0.081 0.919 14 C -0.108 4.108 15 C 0.108 3.892 16 N -0.581 5.581 17 C 0.564 3.436 18 O -0.550 6.550 19 C 0.200 3.800 20 N -0.527 5.527 21 C 0.374 3.626 22 N -0.499 5.499 23 H 0.450 0.550 24 C 0.253 3.747 25 N -0.538 5.538 26 C 0.058 3.942 27 C -0.226 4.226 28 C -0.192 4.192 29 C 0.118 3.882 30 C 0.145 3.855 31 H 0.001 0.999 32 H 0.243 0.757 33 H 0.024 0.976 34 H -0.002 1.002 35 H 0.083 0.917 36 H 0.064 0.936 37 H 0.060 0.940 38 H 0.109 0.891 39 H 0.087 0.913 40 H 0.092 0.908 41 H 0.281 0.719 42 H 0.191 0.809 43 H 0.140 0.860 44 H 0.077 0.923 45 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.505 -7.600 2.040 13.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.604 5.604 2 C -0.261 4.261 3 Si 0.800 3.200 4 H -0.222 1.222 5 H -0.231 1.231 6 H -0.173 1.173 7 C -0.357 4.357 8 H 0.111 0.889 9 N -0.334 5.334 10 C 0.057 3.943 11 C -0.162 4.162 12 C -0.120 4.120 13 H 0.099 0.901 14 C -0.146 4.146 15 C -0.013 4.013 16 N -0.312 5.312 17 C 0.350 3.650 18 O -0.428 6.428 19 C 0.064 3.936 20 N -0.248 5.248 21 C 0.093 3.907 22 N -0.104 5.104 23 H 0.293 0.707 24 C -0.001 4.001 25 N -0.260 5.260 26 C -0.085 4.085 27 C -0.250 4.250 28 C -0.204 4.204 29 C -0.005 4.005 30 C 0.037 3.963 31 H 0.019 0.981 32 H 0.052 0.948 33 H 0.042 0.958 34 H 0.016 0.984 35 H 0.102 0.898 36 H 0.083 0.917 37 H 0.078 0.922 38 H 0.128 0.872 39 H 0.105 0.895 40 H 0.110 0.890 41 H 0.296 0.704 42 H 0.208 0.792 43 H 0.158 0.842 44 H 0.096 0.904 45 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 11.842 -7.487 2.128 14.171 hybrid contribution -0.060 0.852 -0.689 1.097 sum 11.781 -6.635 1.439 13.598 Atomic orbital electron populations 1.70183 1.06568 1.25015 1.58681 1.25647 0.96458 1.01034 1.02987 0.85172 0.78563 0.79189 0.77075 1.22221 1.23086 1.17278 1.19438 0.91139 0.82976 1.42133 0.88916 1.44420 1.02176 1.00357 1.86403 1.21323 0.83470 0.91886 0.97591 1.22566 0.97649 0.95407 1.00579 1.22222 0.95176 0.94910 0.99690 0.90100 1.21765 0.96058 0.95551 1.01226 1.21855 0.87632 0.91728 1.00101 1.48231 1.13648 1.08617 1.60708 1.18133 0.82268 0.86954 0.77644 1.90740 1.77454 1.17413 1.57165 1.21081 0.91664 0.90858 0.90046 1.68111 1.22039 1.01817 1.32842 1.26151 0.81777 0.99921 0.82878 1.41920 1.32919 1.13297 1.22293 0.70661 1.20664 0.96854 0.87570 0.95000 1.69536 1.29500 1.11902 1.15036 1.22988 0.94921 0.91277 0.99300 1.21510 1.05242 0.99531 0.98719 1.21009 1.01399 0.98629 0.99408 1.22060 0.97897 0.78584 1.01912 1.21177 0.93689 0.86192 0.95252 0.98120 0.94767 0.95762 0.98415 0.89833 0.91718 0.92168 0.87240 0.89513 0.89014 0.70406 0.79208 0.84194 0.90425 0.87608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -55.28 10.43 21.65 0.23 -55.06 16 2 C -0.07 -3.65 5.49 84.86 0.47 -3.19 16 3 Si 0.97 41.78 29.55 68.60 2.03 43.80 16 4 H -0.29 -12.77 7.11 99.48 0.71 -12.07 16 5 H -0.30 -13.63 7.11 99.48 0.71 -12.92 16 6 H -0.25 -9.31 7.11 99.48 0.71 -8.60 16 7 C -0.23 -11.55 9.88 84.03 0.83 -10.72 16 8 H 0.09 4.27 7.41 -2.92 -0.02 4.24 16 9 N -0.61 -29.07 3.35 -669.01 -2.24 -31.31 16 10 C 0.18 8.65 5.45 86.85 0.47 9.12 16 11 C -0.12 -4.29 6.54 31.57 0.21 -4.08 16 12 C -0.10 -3.17 2.62 -10.08 -0.03 -3.19 16 13 H 0.08 2.56 8.13 -2.39 -0.02 2.54 16 14 C -0.11 -2.65 5.72 30.56 0.17 -2.48 16 15 C 0.11 2.75 6.32 86.66 0.55 3.30 16 16 N -0.58 -17.77 3.01 -821.29 -2.47 -20.24 16 17 C 0.56 18.70 7.48 87.02 0.65 19.36 16 18 O -0.55 -20.23 16.02 -3.54 -0.06 -20.29 16 19 C 0.20 6.09 6.06 41.98 0.25 6.34 16 20 N -0.53 -12.83 7.22 -187.69 -1.35 -14.18 16 21 C 0.37 5.40 12.24 180.49 2.21 7.60 16 22 N -0.50 -7.63 5.32 -191.95 -1.02 -8.65 16 23 H 0.45 3.01 8.93 -92.71 -0.83 2.18 16 24 C 0.25 6.70 8.72 136.29 1.19 7.89 16 25 N -0.54 -15.65 11.16 -188.43 -2.10 -17.76 16 26 C 0.06 1.61 11.70 83.93 0.98 2.59 16 27 C -0.23 -7.01 10.63 22.36 0.24 -6.77 16 28 C -0.19 -6.00 6.16 -19.88 -0.12 -6.12 16 29 C 0.12 3.93 5.22 85.73 0.45 4.37 16 30 C 0.15 5.57 2.77 45.65 0.13 5.70 16 31 H 0.00 0.06 7.90 -2.39 -0.02 0.04 16 32 H 0.24 13.87 8.31 -92.71 -0.77 13.10 16 33 H 0.02 1.28 7.21 -2.38 -0.02 1.27 16 34 H 0.00 -0.13 7.76 -2.39 -0.02 -0.15 16 35 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 36 H 0.06 2.13 8.12 -2.38 -0.02 2.11 16 37 H 0.06 1.60 7.96 -2.39 -0.02 1.58 16 38 H 0.11 2.03 8.14 -2.39 -0.02 2.01 16 39 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 40 H 0.09 2.35 6.98 -2.39 -0.02 2.33 16 41 H 0.28 0.56 8.06 -2.91 -0.02 0.54 16 42 H 0.19 3.96 8.06 -2.91 -0.02 3.94 16 43 H 0.14 4.30 8.06 -2.91 -0.02 4.28 16 44 H 0.08 2.60 8.14 -2.38 -0.02 2.58 16 45 H 0.11 3.55 4.35 -2.39 -0.01 3.54 16 Total: -1.00 -78.90 360.18 1.86 -77.04 By element: Atomic # 1 Polarization: 16.73 SS G_CDS: 0.21 Total: 16.94 kcal Atomic # 6 Polarization: 21.06 SS G_CDS: 8.65 Total: 29.71 kcal Atomic # 7 Polarization: -138.24 SS G_CDS: -8.96 Total: -147.20 kcal Atomic # 8 Polarization: -20.23 SS G_CDS: -0.06 Total: -20.29 kcal Atomic # 14 Polarization: 41.78 SS G_CDS: 2.03 Total: 43.80 kcal Total: -78.90 1.86 -77.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042133590.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.082 kcal (2) G-P(sol) polarization free energy of solvation -78.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.038 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds