Wall clock time and date at job start Sat Apr 11 2020 06:22:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86796 * 119.99870 * 2 1 4 4 H 1.48504 * 109.46827 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47181 * 299.99660 * 3 2 1 6 6 H 1.48499 * 109.47267 * 60.00023 * 3 2 1 7 7 C 1.38811 * 119.99894 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99860 * 179.97438 * 7 2 1 9 9 N 1.36941 * 120.00362 * 0.02562 * 7 2 1 10 10 C 1.47433 * 126.05386 * 0.02562 * 9 7 2 11 11 C 1.54507 * 107.14543 * 178.35341 * 10 9 7 12 12 C 1.56024 * 102.61139 * 337.16047 * 11 10 9 13 13 H 1.09005 * 112.85545 * 157.06453 * 12 11 10 14 14 C 1.53090 * 106.39815 * 281.61419 * 12 11 10 15 15 C 1.52836 * 110.57516 * 164.58764 * 14 12 11 16 16 N 1.47161 * 107.97276 * 302.64090 * 15 14 12 17 17 C 1.34770 * 121.21666 * 237.30480 * 16 15 14 18 18 O 1.21446 * 119.99775 * 170.34632 * 17 16 15 19 19 C 1.48634 * 120.00032 * 350.35284 * 17 16 15 20 20 N 1.33510 * 120.60128 * 352.71852 * 19 17 16 21 21 C 1.30809 * 122.64991 * 179.69609 * 20 19 17 22 22 N 1.34061 * 123.37938 * 0.60580 * 21 20 19 23 23 H 0.97003 * 120.21303 * 179.72681 * 22 21 20 24 24 C 1.36860 * 119.57331 * 359.70075 * 22 21 20 25 25 N 1.31645 * 135.96136 * 180.02562 * 24 22 21 26 26 C 1.33517 * 110.83449 * 179.97438 * 25 24 22 27 27 C 1.36077 * 110.93295 * 0.02562 * 26 25 24 28 28 C 1.39541 * 120.60193 * 172.99878 * 19 17 16 29 29 C 1.46763 * 117.56739 * 57.29242 * 16 15 14 30 30 C 1.46466 * 126.06055 * 180.02562 * 9 7 2 31 31 H 1.08994 * 108.42080 * 90.12552 * 30 9 7 32 32 H 0.96992 * 120.00197 * 0.02562 * 1 2 3 33 33 H 1.08993 * 109.90779 * 297.73432 * 10 9 7 34 34 H 1.08999 * 109.90332 * 58.79987 * 10 9 7 35 35 H 1.09003 * 110.78027 * 95.43679 * 11 10 9 36 36 H 1.08990 * 110.78553 * 218.68888 * 11 10 9 37 37 H 1.08999 * 109.25586 * 284.86711 * 14 12 11 38 38 H 1.09001 * 109.25791 * 44.29796 * 14 12 11 39 39 H 1.08991 * 109.76333 * 62.26247 * 15 14 12 40 40 H 1.09001 * 109.76006 * 183.03126 * 15 14 12 41 41 H 1.08001 * 118.31052 * 180.28311 * 21 20 19 42 42 H 1.07998 * 124.53516 * 179.97438 * 26 25 24 43 43 H 1.08003 * 126.72546 * 180.02562 * 27 26 25 44 44 H 1.09000 * 109.22396 * 187.16183 * 29 16 15 45 45 H 1.08994 * 109.22713 * 67.79755 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0016 10 6 -0.1405 -2.5437 -0.0028 11 6 -0.4377 -4.0593 -0.0461 12 6 0.8724 -4.6460 -0.6574 13 1 1.0217 -5.6969 -0.4093 14 6 0.7982 -4.3904 -2.1650 15 6 2.1720 -4.5739 -2.8091 16 7 3.1115 -3.6569 -2.1442 17 6 3.8043 -2.7376 -2.8450 18 8 4.4370 -1.8802 -2.2624 19 6 3.7939 -2.7729 -4.3308 20 7 3.2246 -3.7897 -4.9825 21 6 3.1874 -3.8587 -6.2883 22 7 3.7232 -2.9287 -7.0916 23 1 3.6725 -3.0281 -8.0551 24 6 4.3417 -1.8378 -6.5434 25 7 4.9549 -0.7673 -7.0028 26 6 5.3858 0.0006 -5.9991 27 6 5.0660 -0.5478 -4.7955 28 6 4.3840 -1.7470 -5.0700 29 6 3.2662 -3.7799 -0.6899 30 6 1.9200 -3.7268 -0.0017 31 1 2.0569 -4.0429 1.0323 32 1 -0.4850 0.8400 -0.0004 33 1 -0.5606 -2.1090 0.9041 34 1 -0.5648 -2.0545 -0.8796 35 1 -0.6046 -4.4495 0.9579 36 1 -1.2940 -4.2673 -0.6875 37 1 0.0942 -5.0909 -2.6141 38 1 0.4521 -3.3718 -2.3403 39 1 2.5062 -5.6030 -2.6777 40 1 2.1155 -4.3368 -3.8715 41 1 2.7046 -4.7113 -6.7426 42 1 5.9179 0.9318 -6.1256 43 1 5.2908 -0.1414 -3.8204 44 1 3.8883 -2.9628 -0.3248 45 1 3.7497 -4.7292 -0.4594 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042133594.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:00 Heat of formation + Delta-G solvation = 124.759592 kcal Electronic energy + Delta-G solvation = -31187.621038 eV Core-core repulsion = 27208.411426 eV Total energy + Delta-G solvation = -3979.209611 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.78 seconds Orbital eigenvalues (eV) -41.97501 -39.86842 -38.71794 -38.03939 -35.35285 -34.74520 -32.78537 -31.09158 -30.53270 -29.45350 -28.82581 -28.31707 -25.79173 -24.53991 -23.80186 -23.34959 -22.40741 -21.30658 -20.15302 -19.92541 -18.70885 -18.33108 -17.80648 -16.79428 -16.50093 -16.00895 -15.90303 -15.65467 -14.97359 -14.61288 -14.33584 -14.14062 -13.88077 -13.56957 -13.21236 -13.05836 -13.00597 -12.75782 -12.59134 -12.28013 -11.94992 -11.74281 -11.53390 -11.33197 -11.29635 -10.81879 -10.77441 -10.69041 -10.25041 -9.98295 -9.86547 -9.80136 -9.69243 -9.60041 -9.44010 -9.06483 -8.62616 -8.47998 -8.10018 -7.86043 -6.71426 -5.59261 -2.89632 -0.29610 1.27713 2.05439 2.81859 3.13649 3.38669 3.51774 3.58650 3.61730 3.64914 3.79076 4.05390 4.40819 4.63730 4.69091 4.85743 5.13061 5.27028 5.33804 5.43198 5.47651 5.60785 5.68332 5.79973 5.88307 5.93146 6.01358 6.05066 6.16100 6.25193 6.28974 6.33746 6.35475 6.47438 6.53068 6.55345 6.60246 6.67576 6.77947 7.00219 7.02485 7.14890 7.31949 7.66856 7.69795 7.86392 7.89546 7.97315 8.35258 8.53498 9.34693 9.95474 10.59272 11.53184 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010780 B = 0.005231 C = 0.003968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2596.758660 B = 5351.811922 C = 7055.016480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C -0.010 4.010 3 Si 0.903 3.097 4 H -0.275 1.275 5 H -0.293 1.293 6 H -0.294 1.294 7 C -0.207 4.207 8 H 0.084 0.916 9 N -0.588 5.588 10 C 0.178 3.822 11 C -0.144 4.144 12 C -0.102 4.102 13 H 0.075 0.925 14 C -0.122 4.122 15 C 0.078 3.922 16 N -0.570 5.570 17 C 0.564 3.436 18 O -0.502 6.502 19 C 0.209 3.791 20 N -0.508 5.508 21 C 0.342 3.658 22 N -0.520 5.520 23 H 0.425 0.575 24 C 0.249 3.751 25 N -0.518 5.518 26 C 0.053 3.947 27 C -0.185 4.185 28 C -0.153 4.153 29 C 0.111 3.889 30 C 0.154 3.846 31 H 0.027 0.973 32 H 0.248 0.752 33 H 0.040 0.960 34 H 0.044 0.956 35 H 0.053 0.947 36 H 0.057 0.943 37 H 0.059 0.941 38 H 0.076 0.924 39 H 0.058 0.942 40 H 0.137 0.863 41 H 0.219 0.781 42 H 0.166 0.834 43 H 0.154 0.846 44 H 0.095 0.905 45 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.859 -14.314 -13.694 20.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.205 4.205 3 Si 0.735 3.265 4 H -0.200 1.200 5 H -0.220 1.220 6 H -0.221 1.221 7 C -0.336 4.336 8 H 0.102 0.898 9 N -0.313 5.313 10 C 0.054 3.946 11 C -0.182 4.182 12 C -0.122 4.122 13 H 0.093 0.907 14 C -0.160 4.160 15 C -0.045 4.045 16 N -0.302 5.302 17 C 0.349 3.651 18 O -0.376 6.376 19 C 0.076 3.924 20 N -0.230 5.230 21 C 0.060 3.940 22 N -0.124 5.124 23 H 0.264 0.736 24 C -0.005 4.005 25 N -0.239 5.239 26 C -0.089 4.089 27 C -0.208 4.208 28 C -0.165 4.165 29 C -0.012 4.012 30 C 0.046 3.954 31 H 0.044 0.956 32 H 0.058 0.942 33 H 0.058 0.942 34 H 0.062 0.938 35 H 0.071 0.929 36 H 0.076 0.924 37 H 0.078 0.922 38 H 0.094 0.906 39 H 0.076 0.924 40 H 0.154 0.846 41 H 0.235 0.765 42 H 0.183 0.817 43 H 0.172 0.828 44 H 0.113 0.887 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 4.049 -13.827 -13.764 19.925 hybrid contribution 0.321 1.280 0.009 1.320 sum 4.370 -12.547 -13.756 19.124 Atomic orbital electron populations 1.69971 1.04834 1.24597 1.58090 1.24703 0.95575 0.97498 1.02748 0.86121 0.79448 0.84085 0.76884 1.20036 1.22026 1.22117 1.19137 0.90721 0.81937 1.41763 0.89793 1.44327 1.01427 0.99304 1.86242 1.21213 0.84347 0.88312 1.00777 1.23161 0.96190 0.99713 0.99175 1.22387 0.96925 0.97621 0.95242 0.90711 1.21843 0.96350 1.02872 0.94954 1.22776 0.88169 0.92395 1.01127 1.47630 1.40839 1.33828 1.07858 1.17622 0.81326 0.81956 0.84239 1.90794 1.43773 1.34109 1.68896 1.21530 0.88184 0.87772 0.94935 1.67995 1.23106 1.25988 1.05937 1.25001 0.90712 0.90941 0.87377 1.41723 1.42033 1.16254 1.12423 0.73600 1.20505 0.99528 0.90930 0.89560 1.69492 1.17393 1.02918 1.34047 1.22629 0.99506 0.98730 0.88023 1.21677 1.03855 0.94969 1.00341 1.20808 1.05151 0.98549 0.91993 1.21520 0.99337 1.01502 0.78883 1.20704 0.91047 0.87926 0.95757 0.95595 0.94166 0.94171 0.93763 0.92853 0.92382 0.92222 0.90580 0.92357 0.84642 0.76460 0.81657 0.82786 0.88681 0.92383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.99 10.38 55.49 0.58 -27.41 16 2 C -0.01 -0.29 5.49 -17.43 -0.10 -0.39 16 3 Si 0.90 23.91 29.55 -169.99 -5.02 18.89 16 4 H -0.28 -7.25 7.11 56.52 0.40 -6.85 16 5 H -0.29 -7.88 7.11 56.52 0.40 -7.47 16 6 H -0.29 -7.72 7.11 56.52 0.40 -7.31 16 7 C -0.21 -5.86 9.70 -15.06 -0.15 -6.00 16 8 H 0.08 2.43 6.50 -52.48 -0.34 2.08 16 9 N -0.59 -14.66 3.20 -164.40 -0.53 -15.18 16 10 C 0.18 4.28 4.61 -2.74 -0.01 4.27 16 11 C -0.14 -2.61 6.32 -24.32 -0.15 -2.77 16 12 C -0.10 -1.68 3.68 -88.42 -0.33 -2.01 16 13 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 14 C -0.12 -1.90 5.04 -26.77 -0.14 -2.04 16 15 C 0.08 1.10 6.00 -3.77 -0.02 1.08 16 16 N -0.57 -10.18 2.97 -174.90 -0.52 -10.70 16 17 C 0.56 11.08 7.69 -11.97 -0.09 10.98 16 18 O -0.50 -11.60 14.94 5.41 0.08 -11.52 16 19 C 0.21 3.42 6.68 -82.36 -0.55 2.87 16 20 N -0.51 -5.87 6.21 -10.67 -0.07 -5.94 16 21 C 0.34 2.29 12.24 -91.00 -1.11 1.18 16 22 N -0.52 -4.10 5.32 -12.02 -0.06 -4.17 16 23 H 0.43 1.59 8.93 -40.82 -0.36 1.23 16 24 C 0.25 3.48 8.72 -154.19 -1.34 2.14 16 25 N -0.52 -8.10 11.16 -10.91 -0.12 -8.23 16 26 C 0.05 0.83 11.70 -17.60 -0.21 0.63 16 27 C -0.18 -3.28 10.26 -39.44 -0.40 -3.69 16 28 C -0.15 -2.60 6.19 -104.64 -0.65 -3.25 16 29 C 0.11 2.06 5.69 -4.77 -0.03 2.03 16 30 C 0.15 3.07 2.97 -68.28 -0.20 2.87 16 31 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 33 H 0.04 1.08 7.57 -51.93 -0.39 0.69 16 34 H 0.04 1.19 7.04 -51.93 -0.37 0.83 16 35 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 36 H 0.06 0.95 7.98 -51.93 -0.41 0.54 16 37 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.08 1.51 6.86 -51.93 -0.36 1.16 16 39 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.14 1.76 4.01 -79.57 -0.32 1.44 16 41 H 0.22 0.06 8.06 -52.49 -0.42 -0.37 16 42 H 0.17 2.10 8.06 -52.49 -0.42 1.68 16 43 H 0.15 2.91 7.40 -52.48 -0.39 2.52 16 44 H 0.09 2.05 5.53 -51.93 -0.29 1.77 16 45 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 353.11 15.07 5.32 5.32 Total: -1.00 -38.21 353.11 -11.57 -49.77 By element: Atomic # 1 Polarization: 7.01 SS G_CDS: -5.75 Total: 1.26 kcal Atomic # 6 Polarization: 13.38 SS G_CDS: -5.48 Total: 7.91 kcal Atomic # 7 Polarization: -70.90 SS G_CDS: -0.72 Total: -71.63 kcal Atomic # 8 Polarization: -11.60 SS G_CDS: 0.08 Total: -11.52 kcal Atomic # 14 Polarization: 23.91 SS G_CDS: -5.02 Total: 18.89 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -38.21 -11.57 -49.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042133594.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 174.533 kcal (2) G-P(sol) polarization free energy of solvation -38.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 136.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.773 kcal (6) G-S(sol) free energy of system = (1) + (5) 124.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.79 seconds