Wall clock time and date at job start Sat Apr 11 2020 06:22:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86803 * 119.99494 * 2 1 4 4 H 1.48499 * 109.47379 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47189 * 120.00048 * 3 2 1 6 6 H 1.48501 * 109.46953 * 239.99630 * 3 2 1 7 7 C 1.38808 * 120.00387 * 180.27068 * 2 1 3 8 8 H 1.07998 * 119.99754 * 179.97438 * 7 2 1 9 9 N 1.36938 * 119.99925 * 0.02562 * 7 2 1 10 10 C 1.48148 * 126.39610 * 359.68549 * 9 7 2 11 11 C 1.55353 * 107.01633 * 174.88923 * 10 9 7 12 12 C 1.53702 * 101.90042 * 337.90536 * 11 10 9 13 13 H 1.09004 * 111.10487 * 281.19892 * 12 11 10 14 14 C 1.51974 * 115.61289 * 153.51752 * 12 11 10 15 15 C 1.53891 * 107.28956 * 184.24199 * 14 12 11 16 16 N 1.46592 * 110.70660 * 51.80965 * 15 14 12 17 17 C 1.34779 * 119.75439 * 132.27980 * 16 15 14 18 18 O 1.21584 * 119.99840 * 355.27490 * 17 16 15 19 19 C 1.47580 * 120.00361 * 175.28363 * 17 16 15 20 20 C 1.41521 * 120.56115 * 324.79788 * 19 17 16 21 21 N 1.30908 * 120.16690 * 179.76771 * 20 19 17 22 22 C 1.34260 * 121.26802 * 0.50549 * 21 20 19 23 23 N 1.32430 * 131.63196 * 179.73178 * 22 21 20 24 24 C 1.33704 * 109.32399 * 180.02562 * 23 22 21 25 25 C 1.34905 * 108.65845 * 0.02562 * 24 23 22 26 26 N 1.37009 * 107.05457 * 359.97438 * 25 24 23 27 27 C 1.35972 * 132.55043 * 179.97438 * 26 25 24 28 28 C 1.46257 * 120.10039 * 312.15454 * 16 15 14 29 29 C 1.45508 * 126.39546 * 179.97438 * 9 7 2 30 30 H 1.08998 * 109.57386 * 93.35133 * 29 9 7 31 31 H 0.96993 * 120.00472 * 359.72422 * 1 2 3 32 32 H 1.09000 * 109.92055 * 294.36003 * 10 9 7 33 33 H 1.08998 * 109.92268 * 55.66940 * 10 9 7 34 34 H 1.08996 * 111.09592 * 219.66977 * 11 10 9 35 35 H 1.08997 * 110.77630 * 95.99913 * 11 10 9 36 36 H 1.08998 * 109.88899 * 303.68917 * 14 12 11 37 37 H 1.09003 * 109.89549 * 64.79630 * 14 12 11 38 38 H 1.08994 * 109.23028 * 172.12374 * 15 14 12 39 39 H 1.08999 * 109.23075 * 291.53650 * 15 14 12 40 40 H 1.07996 * 119.91894 * 0.02562 * 20 19 17 41 41 H 1.07997 * 125.66700 * 180.02562 * 24 23 22 42 42 H 1.07995 * 126.47112 * 179.97438 * 25 24 23 43 43 H 1.07994 * 120.58325 * 359.97438 * 27 26 25 44 44 H 1.08999 * 109.63150 * 292.35127 * 28 16 15 45 45 H 1.09000 * 109.73122 * 171.27921 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 1.2850 2.7465 -0.0006 5 1 3.1038 1.6966 1.2125 6 1 3.1039 1.6965 -1.2125 7 6 2.0103 -1.2021 -0.0057 8 1 3.0903 -1.2019 -0.0061 9 7 1.3257 -2.3880 -0.0118 10 6 -0.1465 -2.5531 -0.0067 11 6 -0.4340 -4.0732 -0.1494 12 6 0.8686 -4.5837 -0.7859 13 1 0.8919 -4.3729 -1.8551 14 6 1.2083 -6.0390 -0.5098 15 6 2.5857 -6.3143 -1.1383 16 7 3.5656 -5.3174 -0.6967 17 6 4.7742 -5.7177 -0.2545 18 8 5.0181 -6.9034 -0.1416 19 6 5.8015 -4.7167 0.0929 20 6 5.9088 -3.5113 -0.6407 21 7 6.8200 -2.6267 -0.3230 22 6 7.6752 -2.8401 0.6897 23 7 8.6618 -2.1040 1.1780 24 6 9.2317 -2.7500 2.2005 25 6 8.5980 -3.9283 2.3735 26 7 7.6118 -3.9973 1.4249 27 6 6.6793 -4.9435 1.1351 28 6 3.2333 -3.8937 -0.7386 29 6 1.9084 -3.7213 -0.0187 30 1 1.9996 -4.0852 1.0047 31 1 -0.4850 0.8399 0.0040 32 1 -0.5586 -2.1817 0.9316 33 1 -0.5837 -2.0137 -0.8469 34 1 -1.2850 -4.2514 -0.8067 35 1 -0.5958 -4.5295 0.8271 36 1 1.2498 -6.2126 0.5655 37 1 0.4579 -6.6873 -0.9623 38 1 2.9242 -7.3067 -0.8407 39 1 2.4992 -6.2752 -2.2242 40 1 5.2345 -3.3187 -1.4621 41 1 10.0614 -2.3886 2.7899 42 1 8.8251 -4.6760 3.1190 43 1 6.6258 -5.8563 1.7096 44 1 3.1403 -3.5697 -1.7751 45 1 4.0105 -3.3195 -0.2344 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042154608.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:23 Heat of formation + Delta-G solvation = 126.050750 kcal Electronic energy + Delta-G solvation = -30419.540008 eV Core-core repulsion = 26440.386385 eV Total energy + Delta-G solvation = -3979.153623 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -43.21712 -40.69949 -38.69758 -37.89089 -35.54573 -34.75849 -33.35304 -31.94898 -30.91404 -29.50077 -29.38877 -28.56559 -25.55620 -24.87322 -24.42030 -23.38805 -22.33955 -21.96601 -20.42995 -20.06666 -19.43808 -18.86682 -17.89229 -16.92549 -16.75316 -16.43866 -16.14090 -15.63786 -15.19365 -14.87499 -14.55099 -14.36339 -14.23288 -14.08869 -13.84293 -13.64996 -13.38815 -13.14132 -12.75628 -12.51383 -12.17676 -12.05296 -11.94442 -11.73166 -11.37371 -10.96562 -10.92133 -10.84336 -10.76093 -10.43131 -10.19453 -10.06601 -9.93581 -9.88560 -9.73127 -9.60525 -9.30993 -8.70198 -8.65415 -8.38999 -6.95142 -5.79098 -3.14329 0.13757 0.63275 1.98284 2.29206 2.72116 2.89920 3.39463 3.40675 3.42563 3.44846 3.47663 3.96347 4.06063 4.30220 4.46394 4.51910 4.80946 4.85744 4.99767 5.03857 5.06876 5.15961 5.27756 5.34804 5.44422 5.50696 5.60353 5.69130 5.72599 5.80487 5.83627 5.92774 5.99006 6.12496 6.12999 6.20607 6.26659 6.30881 6.47310 6.50913 6.63119 6.89934 7.22961 7.29577 7.46691 7.52671 7.73586 7.73864 7.91335 8.15094 9.10266 9.73852 10.39324 11.32525 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.008986 B = 0.004890 C = 0.003336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3115.309394 B = 5724.396148 C = 8390.906212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.000 4.000 3 Si 0.907 3.093 4 H -0.290 1.290 5 H -0.285 1.285 6 H -0.281 1.281 7 C -0.236 4.236 8 H 0.077 0.923 9 N -0.591 5.591 10 C 0.177 3.823 11 C -0.138 4.138 12 C -0.113 4.113 13 H 0.079 0.921 14 C -0.119 4.119 15 C 0.113 3.887 16 N -0.590 5.590 17 C 0.578 3.422 18 O -0.541 6.541 19 C -0.217 4.217 20 C 0.199 3.801 21 N -0.432 5.432 22 C 0.389 3.611 23 N -0.470 5.470 24 C 0.050 3.950 25 C -0.097 4.097 26 N -0.402 5.402 27 C 0.178 3.822 28 C 0.092 3.908 29 C 0.156 3.844 30 H 0.025 0.975 31 H 0.254 0.746 32 H 0.038 0.962 33 H 0.057 0.943 34 H 0.060 0.940 35 H 0.055 0.945 36 H 0.067 0.933 37 H 0.076 0.924 38 H 0.091 0.909 39 H 0.069 0.931 40 H 0.194 0.806 41 H 0.190 0.810 42 H 0.190 0.810 43 H 0.186 0.814 44 H 0.083 0.917 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.036 -14.068 1.226 16.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.197 4.197 3 Si 0.737 3.263 4 H -0.215 1.215 5 H -0.211 1.211 6 H -0.207 1.207 7 C -0.364 4.364 8 H 0.095 0.905 9 N -0.316 5.316 10 C 0.053 3.947 11 C -0.176 4.176 12 C -0.133 4.133 13 H 0.097 0.903 14 C -0.157 4.157 15 C -0.009 4.009 16 N -0.321 5.321 17 C 0.364 3.636 18 O -0.420 6.420 19 C -0.226 4.226 20 C 0.011 3.989 21 N -0.142 5.142 22 C 0.041 3.959 23 N -0.192 5.192 24 C -0.101 4.101 25 C -0.226 4.226 26 N -0.079 5.079 27 C 0.043 3.957 28 C -0.032 4.032 29 C 0.047 3.953 30 H 0.042 0.958 31 H 0.064 0.936 32 H 0.056 0.944 33 H 0.076 0.924 34 H 0.079 0.921 35 H 0.074 0.926 36 H 0.086 0.914 37 H 0.094 0.906 38 H 0.109 0.891 39 H 0.087 0.913 40 H 0.210 0.790 41 H 0.207 0.793 42 H 0.207 0.793 43 H 0.203 0.797 44 H 0.101 0.899 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 9.642 -12.755 0.702 16.005 hybrid contribution 0.042 -0.449 0.908 1.014 sum 9.684 -13.204 1.610 16.454 Atomic orbital electron populations 1.69923 1.04918 1.25380 1.56235 1.24759 0.95631 0.97661 1.01635 0.86280 0.78562 0.83190 0.78304 1.21538 1.21107 1.20744 1.18904 0.90228 0.82215 1.45004 0.90483 1.44152 1.01693 0.98963 1.86778 1.21567 0.83520 0.88534 1.01054 1.22728 0.96004 0.99579 0.99303 1.22290 0.97303 0.93421 1.00283 0.90283 1.21797 0.95306 0.97304 1.01340 1.21675 0.88207 0.92246 0.98807 1.47729 1.13134 1.08474 1.62766 1.17453 0.81626 0.87110 0.77400 1.90785 1.79957 1.16788 1.54438 1.20630 1.01322 0.99501 1.01110 1.23811 0.91900 0.86187 0.97014 1.67907 1.03896 1.30056 1.12360 1.22235 0.97650 0.83005 0.93047 1.70754 1.07852 1.28255 1.12344 1.22681 1.00414 0.91211 0.95758 1.22723 0.95724 1.04409 0.99786 1.44028 1.22755 1.16313 1.24850 1.22409 0.85571 0.92747 0.95012 1.22162 1.00033 0.78685 1.02284 1.20951 0.90684 0.88097 0.95551 0.95759 0.93578 0.94421 0.92447 0.92095 0.92591 0.91409 0.90595 0.89052 0.91291 0.78958 0.79270 0.79340 0.79710 0.89894 0.89416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.91 10.44 55.49 0.58 -25.33 16 2 C 0.00 0.01 5.49 -17.43 -0.10 -0.09 16 3 Si 0.91 21.89 29.55 -169.99 -5.02 16.86 16 4 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 5 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.24 -6.12 9.88 -15.06 -0.15 -6.27 16 8 H 0.08 1.94 7.43 -52.49 -0.39 1.55 16 9 N -0.59 -13.74 3.35 -162.90 -0.54 -14.28 16 10 C 0.18 4.00 5.46 -1.89 -0.01 3.99 16 11 C -0.14 -2.33 6.57 -25.12 -0.16 -2.49 16 12 C -0.11 -1.73 2.58 -89.53 -0.23 -1.96 16 13 H 0.08 1.23 8.12 -51.93 -0.42 0.81 16 14 C -0.12 -1.43 5.76 -26.79 -0.15 -1.58 16 15 C 0.11 1.31 6.34 -3.53 -0.02 1.29 16 16 N -0.59 -7.82 2.98 -175.22 -0.52 -8.34 16 17 C 0.58 7.84 7.38 -12.45 -0.09 7.75 16 18 O -0.54 -8.26 16.17 5.29 0.09 -8.17 16 19 C -0.22 -2.80 5.28 -104.87 -0.55 -3.36 16 20 C 0.20 2.77 8.61 -16.70 -0.14 2.62 16 21 N -0.43 -7.16 10.45 -13.37 -0.14 -7.30 16 22 C 0.39 6.30 8.91 -322.24 -2.87 3.43 16 23 N -0.47 -7.59 11.31 -14.41 -0.16 -7.75 16 24 C 0.05 0.57 11.82 -17.92 -0.21 0.36 16 25 C -0.10 -0.97 11.77 -16.42 -0.19 -1.16 16 26 N -0.40 -5.16 2.94 -63.77 -0.19 -5.35 16 27 C 0.18 2.06 10.68 -15.75 -0.17 1.89 16 28 C 0.09 1.40 3.91 -4.80 -0.02 1.38 16 29 C 0.16 2.85 2.80 -67.84 -0.19 2.66 16 30 H 0.03 0.49 7.94 -51.93 -0.41 0.08 16 31 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 32 H 0.04 0.95 7.79 -51.93 -0.40 0.55 16 33 H 0.06 1.44 7.19 -51.93 -0.37 1.07 16 34 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 35 H 0.06 0.90 8.13 -51.93 -0.42 0.48 16 36 H 0.07 0.86 7.99 -51.93 -0.41 0.45 16 37 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.09 1.06 6.93 -51.93 -0.36 0.70 16 39 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 40 H 0.19 2.36 5.98 -52.49 -0.31 2.05 16 41 H 0.19 1.36 8.06 -52.49 -0.42 0.94 16 42 H 0.19 1.06 8.06 -52.49 -0.42 0.64 16 43 H 0.19 1.60 8.02 -52.49 -0.42 1.17 16 44 H 0.08 1.23 8.00 -51.93 -0.42 0.81 16 45 H 0.09 1.39 4.18 -51.93 -0.22 1.18 16 LS Contribution 358.27 15.07 5.40 5.40 Total: -1.00 -33.38 358.27 -11.60 -44.98 By element: Atomic # 1 Polarization: 6.64 SS G_CDS: -5.81 Total: 0.83 kcal Atomic # 6 Polarization: 13.73 SS G_CDS: -5.27 Total: 8.46 kcal Atomic # 7 Polarization: -67.38 SS G_CDS: -0.98 Total: -68.36 kcal Atomic # 8 Polarization: -8.26 SS G_CDS: 0.09 Total: -8.17 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -33.38 -11.60 -44.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042154608.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.028 kcal (2) G-P(sol) polarization free energy of solvation -33.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 137.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.977 kcal (6) G-S(sol) free energy of system = (1) + (5) 126.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds