Wall clock time and date at job start Sat Apr 11 2020 06:22:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86803 * 119.99494 * 2 1 4 4 H 1.48499 * 109.47379 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47189 * 120.00048 * 3 2 1 6 6 H 1.48501 * 109.46953 * 239.99630 * 3 2 1 7 7 C 1.38808 * 120.00387 * 180.27068 * 2 1 3 8 8 H 1.07998 * 119.99754 * 179.97438 * 7 2 1 9 9 N 1.36938 * 119.99925 * 0.02562 * 7 2 1 10 10 C 1.48148 * 126.39610 * 359.68549 * 9 7 2 11 11 C 1.55353 * 107.01633 * 174.88923 * 10 9 7 12 12 C 1.53702 * 101.90042 * 337.90536 * 11 10 9 13 13 H 1.09004 * 111.10487 * 281.19892 * 12 11 10 14 14 C 1.51974 * 115.61289 * 153.51752 * 12 11 10 15 15 C 1.53891 * 107.28956 * 184.24199 * 14 12 11 16 16 N 1.46592 * 110.70660 * 51.80965 * 15 14 12 17 17 C 1.34779 * 119.75439 * 132.27980 * 16 15 14 18 18 O 1.21584 * 119.99840 * 355.27490 * 17 16 15 19 19 C 1.47580 * 120.00361 * 175.28363 * 17 16 15 20 20 C 1.41521 * 120.56115 * 324.79788 * 19 17 16 21 21 N 1.30908 * 120.16690 * 179.76771 * 20 19 17 22 22 C 1.34260 * 121.26802 * 0.50549 * 21 20 19 23 23 N 1.32430 * 131.63196 * 179.73178 * 22 21 20 24 24 C 1.33704 * 109.32399 * 180.02562 * 23 22 21 25 25 C 1.34905 * 108.65845 * 0.02562 * 24 23 22 26 26 N 1.37009 * 107.05457 * 359.97438 * 25 24 23 27 27 C 1.35972 * 132.55043 * 179.97438 * 26 25 24 28 28 C 1.46257 * 120.10039 * 312.15454 * 16 15 14 29 29 C 1.45508 * 126.39546 * 179.97438 * 9 7 2 30 30 H 1.08998 * 109.57386 * 93.35133 * 29 9 7 31 31 H 0.96993 * 120.00472 * 359.72422 * 1 2 3 32 32 H 1.09000 * 109.92055 * 294.36003 * 10 9 7 33 33 H 1.08998 * 109.92268 * 55.66940 * 10 9 7 34 34 H 1.08996 * 111.09592 * 219.66977 * 11 10 9 35 35 H 1.08997 * 110.77630 * 95.99913 * 11 10 9 36 36 H 1.08998 * 109.88899 * 303.68917 * 14 12 11 37 37 H 1.09003 * 109.89549 * 64.79630 * 14 12 11 38 38 H 1.08994 * 109.23028 * 172.12374 * 15 14 12 39 39 H 1.08999 * 109.23075 * 291.53650 * 15 14 12 40 40 H 1.07996 * 119.91894 * 0.02562 * 20 19 17 41 41 H 1.07997 * 125.66700 * 180.02562 * 24 23 22 42 42 H 1.07995 * 126.47112 * 179.97438 * 25 24 23 43 43 H 1.07994 * 120.58325 * 359.97438 * 27 26 25 44 44 H 1.08999 * 109.63150 * 292.35127 * 28 16 15 45 45 H 1.09000 * 109.73122 * 171.27921 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 1.2850 2.7465 -0.0006 5 1 3.1038 1.6966 1.2125 6 1 3.1039 1.6965 -1.2125 7 6 2.0103 -1.2021 -0.0057 8 1 3.0903 -1.2019 -0.0061 9 7 1.3257 -2.3880 -0.0118 10 6 -0.1465 -2.5531 -0.0067 11 6 -0.4340 -4.0732 -0.1494 12 6 0.8686 -4.5837 -0.7859 13 1 0.8919 -4.3729 -1.8551 14 6 1.2083 -6.0390 -0.5098 15 6 2.5857 -6.3143 -1.1383 16 7 3.5656 -5.3174 -0.6967 17 6 4.7742 -5.7177 -0.2545 18 8 5.0181 -6.9034 -0.1416 19 6 5.8015 -4.7167 0.0929 20 6 5.9088 -3.5113 -0.6407 21 7 6.8200 -2.6267 -0.3230 22 6 7.6752 -2.8401 0.6897 23 7 8.6618 -2.1040 1.1780 24 6 9.2317 -2.7500 2.2005 25 6 8.5980 -3.9283 2.3735 26 7 7.6118 -3.9973 1.4249 27 6 6.6793 -4.9435 1.1351 28 6 3.2333 -3.8937 -0.7386 29 6 1.9084 -3.7213 -0.0187 30 1 1.9996 -4.0852 1.0047 31 1 -0.4850 0.8399 0.0040 32 1 -0.5586 -2.1817 0.9316 33 1 -0.5837 -2.0137 -0.8469 34 1 -1.2850 -4.2514 -0.8067 35 1 -0.5958 -4.5295 0.8271 36 1 1.2498 -6.2126 0.5655 37 1 0.4579 -6.6873 -0.9623 38 1 2.9242 -7.3067 -0.8407 39 1 2.4992 -6.2752 -2.2242 40 1 5.2345 -3.3187 -1.4621 41 1 10.0614 -2.3886 2.7899 42 1 8.8251 -4.6760 3.1190 43 1 6.6258 -5.8563 1.7096 44 1 3.1403 -3.5697 -1.7751 45 1 4.0105 -3.3195 -0.2344 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042154608.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:22 Heat of formation + Delta-G solvation = 106.953110 kcal Electronic energy + Delta-G solvation = -30420.368144 eV Core-core repulsion = 26440.386385 eV Total energy + Delta-G solvation = -3979.981758 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -44.17609 -41.82412 -39.97663 -38.95863 -36.88751 -35.78482 -34.84549 -33.39705 -32.15456 -30.80475 -30.44070 -30.05866 -26.82434 -26.01267 -25.96818 -24.56882 -23.47485 -22.91034 -21.79976 -21.58918 -20.58814 -19.88753 -18.93212 -18.64246 -17.78662 -17.49173 -17.25682 -16.80861 -16.62543 -16.23996 -15.88142 -15.69634 -15.26923 -15.14790 -15.05378 -14.83627 -14.71155 -14.24611 -13.90728 -13.78152 -13.72024 -13.30669 -13.15225 -13.07577 -12.99946 -12.73586 -12.51784 -12.10580 -12.03514 -11.96670 -11.70511 -11.51047 -11.41436 -11.29541 -11.01432 -10.83969 -10.70756 -10.33028 -9.76580 -9.32131 -8.89251 -7.85351 -5.19321 -0.80314 -0.36746 1.05790 1.35497 1.45274 1.45696 1.51707 1.73342 1.87727 2.37353 2.44246 2.48374 2.94632 3.18179 3.33471 3.34229 3.48503 3.65186 3.80974 3.94709 3.98425 4.06523 4.19512 4.24846 4.28561 4.34506 4.39938 4.45432 4.51773 4.62888 4.68797 4.85629 4.91273 4.93369 4.97177 5.14231 5.16967 5.18570 5.27516 5.41051 5.47115 5.50990 5.59630 5.69584 5.81805 6.13026 6.20773 6.31000 6.76682 6.85752 7.08994 7.78000 8.44783 9.25333 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.008986 B = 0.004890 C = 0.003336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3115.309394 B = 5724.396148 C = 8390.906212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.056 4.056 3 Si 0.958 3.042 4 H -0.293 1.293 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.229 4.229 8 H 0.080 0.920 9 N -0.609 5.609 10 C 0.181 3.819 11 C -0.123 4.123 12 C -0.098 4.098 13 H 0.081 0.919 14 C -0.107 4.107 15 C 0.110 3.890 16 N -0.587 5.587 17 C 0.587 3.413 18 O -0.554 6.554 19 C -0.232 4.232 20 C 0.197 3.803 21 N -0.473 5.473 22 C 0.350 3.650 23 N -0.513 5.513 24 C 0.034 3.966 25 C -0.072 4.072 26 N -0.406 5.406 27 C 0.192 3.808 28 C 0.106 3.894 29 C 0.146 3.854 30 H 0.013 0.987 31 H 0.246 0.754 32 H -0.003 1.003 33 H 0.024 0.976 34 H 0.083 0.917 35 H 0.066 0.934 36 H 0.063 0.937 37 H 0.108 0.892 38 H 0.099 0.901 39 H 0.088 0.912 40 H 0.199 0.801 41 H 0.225 0.775 42 H 0.240 0.760 43 H 0.221 0.779 44 H 0.088 0.912 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.252 -17.212 1.754 20.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.249 4.249 3 Si 0.788 3.212 4 H -0.219 1.219 5 H -0.215 1.215 6 H -0.202 1.202 7 C -0.358 4.358 8 H 0.098 0.902 9 N -0.335 5.335 10 C 0.056 3.944 11 C -0.161 4.161 12 C -0.118 4.118 13 H 0.100 0.900 14 C -0.146 4.146 15 C -0.011 4.011 16 N -0.318 5.318 17 C 0.374 3.626 18 O -0.434 6.434 19 C -0.241 4.241 20 C 0.010 3.990 21 N -0.185 5.185 22 C 0.003 3.997 23 N -0.237 5.237 24 C -0.115 4.115 25 C -0.201 4.201 26 N -0.084 5.084 27 C 0.058 3.942 28 C -0.018 4.018 29 C 0.038 3.962 30 H 0.030 0.970 31 H 0.055 0.945 32 H 0.016 0.984 33 H 0.042 0.958 34 H 0.102 0.898 35 H 0.085 0.915 36 H 0.082 0.918 37 H 0.126 0.874 38 H 0.117 0.883 39 H 0.106 0.894 40 H 0.216 0.784 41 H 0.242 0.758 42 H 0.256 0.744 43 H 0.237 0.763 44 H 0.106 0.894 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 10.880 -15.944 1.226 19.342 hybrid contribution -0.231 0.479 0.857 1.009 sum 10.649 -15.465 2.084 18.892 Atomic orbital electron populations 1.70113 1.05933 1.25123 1.58314 1.25398 0.96309 1.00247 1.02981 0.85455 0.77332 0.80350 0.78069 1.21944 1.21516 1.20178 1.19210 0.90622 0.83451 1.42547 0.90180 1.44369 1.02382 1.00224 1.86480 1.21358 0.83131 0.92319 0.97580 1.22593 0.97792 0.95000 1.00735 1.22225 0.94740 0.95144 0.99682 0.90031 1.21753 0.96361 0.94944 1.01517 1.21864 0.87382 0.91908 0.99966 1.47693 1.13607 1.07728 1.62758 1.17380 0.81553 0.86829 0.76833 1.90780 1.80207 1.17245 1.55165 1.20579 1.02161 0.99211 1.02150 1.23912 0.91472 0.86368 0.97225 1.67806 1.05246 1.31585 1.13835 1.22261 0.98530 0.84671 0.94270 1.70672 1.08731 1.30043 1.14214 1.23419 1.01351 0.91644 0.95068 1.23631 0.93269 1.04548 0.98648 1.44180 1.23437 1.15713 1.25022 1.22914 0.84080 0.92995 0.94219 1.21850 0.97992 0.80032 1.01917 1.21123 0.93308 0.86030 0.95740 0.96953 0.94472 0.98434 0.95766 0.89825 0.91514 0.91807 0.87352 0.88293 0.89366 0.78429 0.75827 0.74393 0.76271 0.89397 0.90297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.72 10.44 21.65 0.23 -55.49 16 2 C -0.06 -3.11 5.49 84.86 0.47 -2.65 16 3 Si 0.96 46.40 29.55 68.60 2.03 48.42 16 4 H -0.29 -14.25 7.11 99.48 0.71 -13.54 16 5 H -0.29 -13.97 7.11 99.48 0.71 -13.27 16 6 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 7 C -0.23 -12.20 9.88 84.03 0.83 -11.37 16 8 H 0.08 4.12 7.43 -2.91 -0.02 4.10 16 9 N -0.61 -28.90 3.35 -669.30 -2.24 -31.14 16 10 C 0.18 8.39 5.46 86.87 0.47 8.87 16 11 C -0.12 -3.98 6.57 31.64 0.21 -3.78 16 12 C -0.10 -2.78 2.58 -10.09 -0.03 -2.81 16 13 H 0.08 2.32 8.12 -2.39 -0.02 2.30 16 14 C -0.11 -2.17 5.76 30.56 0.18 -1.99 16 15 C 0.11 2.16 6.34 86.66 0.55 2.71 16 16 N -0.59 -14.25 2.98 -826.53 -2.46 -16.71 16 17 C 0.59 14.64 7.38 86.71 0.64 15.28 16 18 O -0.55 -15.31 16.17 -3.98 -0.06 -15.37 16 19 C -0.23 -5.70 5.28 -20.03 -0.11 -5.80 16 20 C 0.20 5.53 8.61 85.64 0.74 6.26 16 21 N -0.47 -16.13 10.45 -196.21 -2.05 -18.18 16 22 C 0.35 11.38 8.91 261.29 2.33 13.71 16 23 N -0.51 -16.53 11.31 -199.51 -2.26 -18.79 16 24 C 0.03 0.71 11.82 83.64 0.99 1.70 16 25 C -0.07 -1.21 11.77 83.12 0.98 -0.23 16 26 N -0.41 -9.64 2.94 -355.66 -1.04 -10.69 16 27 C 0.19 4.00 10.68 84.03 0.90 4.90 16 28 C 0.11 3.12 3.91 86.02 0.34 3.46 16 29 C 0.15 5.21 2.80 45.58 0.13 5.34 16 30 H 0.01 0.50 7.94 -2.39 -0.02 0.48 16 31 H 0.25 14.28 8.31 -92.71 -0.77 13.51 16 32 H 0.00 -0.14 7.79 -2.39 -0.02 -0.16 16 33 H 0.02 1.26 7.19 -2.39 -0.02 1.25 16 34 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 35 H 0.07 2.03 8.13 -2.39 -0.02 2.01 16 36 H 0.06 1.39 7.99 -2.39 -0.02 1.37 16 37 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 38 H 0.10 1.91 6.93 -2.39 -0.02 1.89 16 39 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 40 H 0.20 4.94 5.98 -2.91 -0.02 4.93 16 41 H 0.23 2.60 8.06 -2.91 -0.02 2.57 16 42 H 0.24 1.34 8.06 -2.91 -0.02 1.32 16 43 H 0.22 2.89 8.02 -2.91 -0.02 2.86 16 44 H 0.09 2.51 8.00 -2.39 -0.02 2.49 16 45 H 0.08 2.50 4.18 -2.39 -0.01 2.49 16 Total: -1.00 -77.40 358.27 2.76 -74.64 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: 1.02 Total: 9.70 kcal Atomic # 6 Polarization: 24.00 SS G_CDS: 9.60 Total: 33.60 kcal Atomic # 7 Polarization: -141.17 SS G_CDS: -9.83 Total: -151.00 kcal Atomic # 8 Polarization: -15.31 SS G_CDS: -0.06 Total: -15.37 kcal Atomic # 14 Polarization: 46.40 SS G_CDS: 2.03 Total: 48.42 kcal Total: -77.40 2.76 -74.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042154608.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 181.593 kcal (2) G-P(sol) polarization free energy of solvation -77.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.639 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds