Wall clock time and date at job start Sat Apr 11 2020 06:22:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86797 * 120.00172 * 2 1 4 4 H 1.48495 * 109.47032 * 274.98928 * 3 2 1 5 5 H 1.48502 * 109.47060 * 34.98684 * 3 2 1 6 6 H 1.48493 * 109.47314 * 154.98778 * 3 2 1 7 7 C 1.38813 * 119.99944 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00034 * 172.25503 * 7 2 1 9 9 N 1.36936 * 120.00098 * 352.26184 * 7 2 1 10 10 C 1.48164 * 126.39667 * 352.56255 * 9 7 2 11 11 C 1.55304 * 107.21073 * 184.87669 * 10 9 7 12 12 C 1.54214 * 101.57942 * 22.50885 * 11 10 9 13 13 H 1.09003 * 111.72854 * 78.82453 * 12 11 10 14 14 C 1.51983 * 114.95765 * 206.50611 * 12 11 10 15 15 C 1.53882 * 107.29021 * 175.44772 * 14 12 11 16 16 N 1.46597 * 110.71039 * 308.19451 * 15 14 12 17 17 C 1.34768 * 119.75100 * 227.75619 * 16 15 14 18 18 O 1.21711 * 120.00199 * 185.57562 * 17 16 15 19 19 C 1.46587 * 120.00119 * 5.57197 * 17 16 15 20 20 C 1.40647 * 126.53344 * 30.36157 * 19 17 16 21 21 N 1.30700 * 108.72233 * 179.81490 * 20 19 17 22 22 N 1.39903 * 109.52106 * 0.45169 * 21 20 19 23 23 C 1.36317 * 132.16205 * 179.72030 * 22 21 20 24 24 C 1.35755 * 119.15469 * 179.97438 * 23 22 21 25 25 C 1.39964 * 119.35883 * 359.97438 * 24 23 22 26 26 N 1.31504 * 120.10234 * 0.02562 * 25 24 23 27 27 C 1.33373 * 120.85570 * 359.95671 * 26 25 24 28 28 C 1.47800 * 120.49762 * 47.73657 * 16 15 14 29 29 C 1.45508 * 126.39889 * 172.53706 * 9 7 2 30 30 H 1.08997 * 109.57577 * 265.89336 * 29 9 7 31 31 H 0.97001 * 119.99980 * 0.02562 * 1 2 3 32 32 H 1.08997 * 109.91607 * 304.32249 * 10 9 7 33 33 H 1.08995 * 109.91661 * 65.42548 * 10 9 7 34 34 H 1.08997 * 110.95472 * 140.67950 * 11 10 9 35 35 H 1.09000 * 110.95853 * 264.41831 * 11 10 9 36 36 H 1.09006 * 109.89185 * 55.99968 * 14 12 11 37 37 H 1.08998 * 109.95235 * 294.93338 * 14 12 11 38 38 H 1.08993 * 109.23103 * 187.87680 * 15 14 12 39 39 H 1.09006 * 109.19459 * 68.48756 * 15 14 12 40 40 H 1.07998 * 125.64020 * 359.97438 * 20 19 17 41 41 H 1.07997 * 120.42353 * 359.96983 * 23 22 21 42 42 H 1.08004 * 120.32159 * 180.02562 * 24 23 22 43 43 H 1.07996 * 119.95051 * 180.02562 * 25 24 23 44 44 H 1.08996 * 110.06263 * 189.53203 * 28 16 15 45 45 H 1.08999 * 110.15696 * 68.00996 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.3923 2.1072 -1.3947 5 1 1.5044 2.6199 0.8028 6 1 3.5965 1.4120 0.5919 7 6 2.0103 -1.2022 0.0005 8 1 3.0828 -1.2065 -0.1255 9 7 1.3350 -2.3826 0.1607 10 6 -0.1001 -2.5360 0.4959 11 6 -0.3668 -4.0535 0.6910 12 6 1.0470 -4.5769 1.0159 13 1 1.3227 -4.3783 2.0517 14 6 1.2896 -6.0337 0.6571 15 6 2.7711 -6.3349 0.9444 16 7 3.6366 -5.3467 0.2938 17 6 4.7016 -5.7586 -0.4220 18 8 5.4804 -4.9424 -0.8788 19 6 4.9221 -7.1897 -0.6503 20 6 3.9324 -8.1841 -0.7489 21 7 4.5141 -9.3357 -0.9579 22 7 5.9013 -9.1586 -0.9963 23 6 6.9307 -10.0335 -1.1781 24 6 8.2053 -9.5664 -1.1675 25 6 8.4337 -8.1996 -0.9711 26 7 7.4201 -7.3797 -0.7983 27 6 6.1653 -7.8317 -0.8079 28 6 3.3499 -3.9020 0.4167 29 6 1.8925 -3.7205 0.0331 30 1 1.7335 -4.0872 -0.9809 31 1 -0.4850 0.8401 -0.0004 32 1 -0.3259 -1.9979 1.4165 33 1 -0.7146 -2.1526 -0.3185 34 1 -1.0498 -4.2254 1.5229 35 1 -0.7494 -4.5031 -0.2252 36 1 1.0762 -6.1959 -0.3995 37 1 0.6552 -6.6775 1.2664 38 1 3.0149 -7.3285 0.5684 39 1 2.9402 -6.3070 2.0209 40 1 2.8676 -8.0224 -0.6680 41 1 6.7348 -11.0848 -1.3286 42 1 9.0352 -10.2428 -1.3101 43 1 9.4438 -7.8176 -0.9613 44 1 3.9882 -3.3351 -0.2610 45 1 3.5100 -3.5732 1.4435 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042184629.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:31 Heat of formation + Delta-G solvation = 144.469893 kcal Electronic energy + Delta-G solvation = -29883.450303 eV Core-core repulsion = 25905.095394 eV Total energy + Delta-G solvation = -3978.354909 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.79729 -40.01068 -38.47502 -37.82937 -35.27830 -34.39783 -32.79612 -31.68823 -31.17533 -30.27415 -28.89724 -28.29526 -25.34078 -24.79375 -24.52437 -23.47322 -22.32214 -21.98191 -20.22159 -19.83196 -19.18840 -18.26978 -17.81672 -17.18974 -16.50351 -16.46425 -15.89447 -15.45287 -14.92475 -14.73206 -14.64476 -14.35376 -13.98800 -13.86101 -13.58236 -13.39271 -13.08594 -12.89052 -12.88113 -12.47194 -12.08989 -11.90679 -11.80162 -11.56593 -11.40418 -11.17798 -10.82000 -10.73909 -10.70728 -10.17158 -10.06514 -10.02120 -9.95410 -9.75203 -9.62420 -9.51414 -9.37245 -8.56567 -8.40254 -8.12375 -6.76784 -5.66406 -3.00135 0.04807 0.41493 1.57442 1.89777 2.87337 3.17485 3.46597 3.46968 3.51505 3.52763 3.55400 3.75106 3.93013 4.41463 4.56820 4.57382 4.77922 4.82494 4.95810 4.98306 5.02959 5.10842 5.27272 5.44821 5.51910 5.57730 5.69072 5.74903 5.81532 5.83728 5.99515 6.03688 6.10513 6.13662 6.19707 6.23661 6.47215 6.57543 6.61402 6.80207 6.86334 6.94920 7.14380 7.27466 7.53661 7.70704 7.75917 7.86272 8.29488 8.56885 9.24629 9.88517 10.55735 11.46078 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.018143 B = 0.002947 C = 0.002583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1542.913168 B = 9498.220647 C =10837.579886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.007 4.007 3 Si 0.908 3.092 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.279 1.279 7 C -0.227 4.227 8 H 0.080 0.920 9 N -0.590 5.590 10 C 0.175 3.825 11 C -0.136 4.136 12 C -0.112 4.112 13 H 0.077 0.923 14 C -0.122 4.122 15 C 0.088 3.912 16 N -0.603 5.603 17 C 0.594 3.406 18 O -0.529 6.529 19 C -0.274 4.274 20 C 0.120 3.880 21 N -0.311 5.311 22 N -0.309 5.309 23 C 0.165 3.835 24 C -0.224 4.224 25 C 0.183 3.817 26 N -0.443 5.443 27 C 0.311 3.689 28 C 0.121 3.879 29 C 0.155 3.845 30 H 0.024 0.976 31 H 0.251 0.749 32 H 0.036 0.964 33 H 0.054 0.946 34 H 0.058 0.942 35 H 0.058 0.942 36 H 0.068 0.932 37 H 0.074 0.926 38 H 0.090 0.910 39 H 0.063 0.937 40 H 0.217 0.783 41 H 0.183 0.817 42 H 0.171 0.829 43 H 0.184 0.816 44 H 0.092 0.908 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.448 -25.266 0.727 27.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.203 4.203 3 Si 0.739 3.261 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.205 1.205 7 C -0.355 4.355 8 H 0.097 0.903 9 N -0.315 5.315 10 C 0.050 3.950 11 C -0.174 4.174 12 C -0.132 4.132 13 H 0.095 0.905 14 C -0.161 4.161 15 C -0.035 4.035 16 N -0.337 5.337 17 C 0.381 3.619 18 O -0.405 6.405 19 C -0.291 4.291 20 C -0.060 4.060 21 N -0.133 5.133 22 N -0.078 5.078 23 C 0.029 3.971 24 C -0.248 4.248 25 C 0.000 4.000 26 N -0.154 5.154 27 C 0.080 3.920 28 C -0.001 4.001 29 C 0.046 3.954 30 H 0.042 0.958 31 H 0.062 0.938 32 H 0.054 0.946 33 H 0.072 0.928 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.087 0.913 37 H 0.092 0.908 38 H 0.108 0.892 39 H 0.082 0.918 40 H 0.233 0.767 41 H 0.200 0.800 42 H 0.188 0.812 43 H 0.201 0.799 44 H 0.110 0.890 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 11.420 -24.845 0.448 27.347 hybrid contribution 0.374 0.762 0.025 0.850 sum 11.794 -24.082 0.473 26.820 Atomic orbital electron populations 1.69959 1.04938 1.25014 1.56818 1.24785 0.95609 0.97691 1.02219 0.86149 0.78835 0.83643 0.77514 1.21647 1.21742 1.20493 1.19052 0.90996 0.82538 1.42940 0.90269 1.44143 1.06102 0.99214 1.82073 1.21524 0.84997 0.88695 0.99751 1.22784 0.95186 0.99468 0.99982 1.22351 0.97450 0.93338 1.00077 0.90506 1.21849 0.94584 0.97680 1.01991 1.22251 0.90783 0.92558 0.97888 1.47998 1.26940 1.07630 1.51113 1.16795 0.81048 0.85836 0.78214 1.90826 1.44660 1.54447 1.50573 1.19529 0.89194 0.95789 1.24579 1.24444 1.00797 0.88364 0.92429 1.77615 0.82325 1.22751 1.30590 1.47027 1.07274 1.07889 1.45602 1.22140 0.84647 0.96760 0.93544 1.21934 0.96295 0.98504 1.08088 1.23626 0.98924 0.89373 0.88101 1.68307 0.96260 1.36157 1.14638 1.20348 0.92800 0.81833 0.96999 1.21666 0.98110 0.78090 1.02198 1.20990 0.91127 0.87570 0.95667 0.95835 0.93847 0.94563 0.92834 0.92293 0.92366 0.91317 0.90789 0.89223 0.91822 0.76714 0.80002 0.81174 0.79907 0.88957 0.91307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.40 10.64 55.49 0.59 -26.81 16 2 C -0.01 -0.19 5.45 -17.43 -0.09 -0.29 16 3 Si 0.91 22.75 29.56 -169.99 -5.02 17.73 16 4 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 5 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 6 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 7 C -0.23 -6.42 9.88 -15.06 -0.15 -6.57 16 8 H 0.08 2.21 7.37 -52.49 -0.39 1.82 16 9 N -0.59 -15.13 3.35 -162.89 -0.55 -15.67 16 10 C 0.17 4.22 5.45 -1.90 -0.01 4.21 16 11 C -0.14 -2.46 6.58 -24.87 -0.16 -2.63 16 12 C -0.11 -1.90 2.63 -89.24 -0.23 -2.14 16 13 H 0.08 1.34 8.13 -51.93 -0.42 0.92 16 14 C -0.12 -1.54 5.73 -26.79 -0.15 -1.69 16 15 C 0.09 1.11 5.85 -3.53 -0.02 1.09 16 16 N -0.60 -10.12 3.01 -174.31 -0.52 -10.65 16 17 C 0.59 10.83 7.58 -12.90 -0.10 10.74 16 18 O -0.53 -11.80 16.43 5.18 0.09 -11.71 16 19 C -0.27 -4.13 5.67 -104.65 -0.59 -4.73 16 20 C 0.12 1.41 9.68 -17.12 -0.17 1.24 16 21 N -0.31 -3.63 12.58 30.76 0.39 -3.24 16 22 N -0.31 -3.42 3.86 -11.97 -0.05 -3.46 16 23 C 0.16 1.03 11.29 -16.45 -0.19 0.85 16 24 C -0.22 -0.98 10.05 -39.82 -0.40 -1.38 16 25 C 0.18 1.34 11.28 -17.05 -0.19 1.15 16 26 N -0.44 -5.88 10.47 -12.00 -0.13 -6.01 16 27 C 0.31 4.37 7.82 -155.84 -1.22 3.15 16 28 C 0.12 2.43 5.62 -3.94 -0.02 2.41 16 29 C 0.16 3.26 2.77 -67.82 -0.19 3.07 16 30 H 0.02 0.54 7.90 -51.93 -0.41 0.13 16 31 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 32 H 0.04 0.95 7.84 -51.93 -0.41 0.54 16 33 H 0.05 1.44 7.25 -51.93 -0.38 1.07 16 34 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.06 1.00 8.13 -51.93 -0.42 0.57 16 36 H 0.07 0.86 7.97 -51.93 -0.41 0.44 16 37 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.09 0.93 2.84 -51.94 -0.15 0.78 16 39 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.22 1.90 6.22 -52.49 -0.33 1.57 16 41 H 0.18 0.45 8.06 -52.49 -0.42 0.03 16 42 H 0.17 0.00 8.06 -52.48 -0.42 -0.42 16 43 H 0.18 0.65 8.06 -52.49 -0.42 0.22 16 44 H 0.09 2.09 6.82 -51.93 -0.35 1.74 16 45 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 LS Contribution 360.07 15.07 5.43 5.43 Total: -1.00 -38.23 360.07 -9.43 -47.66 By element: Atomic # 1 Polarization: 4.02 SS G_CDS: -5.76 Total: -1.74 kcal Atomic # 6 Polarization: 12.37 SS G_CDS: -3.89 Total: 8.48 kcal Atomic # 7 Polarization: -65.58 SS G_CDS: -0.26 Total: -65.84 kcal Atomic # 8 Polarization: -11.80 SS G_CDS: 0.09 Total: -11.71 kcal Atomic # 14 Polarization: 22.75 SS G_CDS: -5.02 Total: 17.73 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -38.23 -9.43 -47.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042184629.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 192.127 kcal (2) G-P(sol) polarization free energy of solvation -38.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 153.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.657 kcal (6) G-S(sol) free energy of system = (1) + (5) 144.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds