Wall clock time and date at job start Sat Apr 11 2020 06:22:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86803 * 120.00390 * 2 1 4 4 H 1.48491 * 109.47336 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.46716 * 299.99614 * 3 2 1 6 6 H 1.48501 * 109.47158 * 59.99114 * 3 2 1 7 7 C 1.38816 * 119.99816 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99751 * 180.02562 * 7 2 1 9 9 N 1.36933 * 120.00251 * 0.02562 * 7 2 1 10 10 C 1.48162 * 126.39528 * 0.02562 * 9 7 2 11 11 C 1.55297 * 107.04378 * 175.00101 * 10 9 7 12 12 C 1.53707 * 101.81421 * 337.55705 * 11 10 9 13 13 H 1.08999 * 111.10753 * 280.63565 * 12 11 10 14 14 C 1.51977 * 115.00593 * 153.46120 * 12 11 10 15 15 C 1.53885 * 107.28861 * 184.55514 * 14 12 11 16 16 N 1.46593 * 110.71272 * 51.80606 * 15 14 12 17 17 C 1.34775 * 119.75165 * 132.26549 * 16 15 14 18 18 O 1.21714 * 120.00272 * 185.43688 * 17 16 15 19 19 C 1.46594 * 119.99831 * 5.43627 * 17 16 15 20 20 C 1.40637 * 126.53890 * 38.62551 * 19 17 16 21 21 N 1.30697 * 108.72400 * 180.02562 * 20 19 17 22 22 N 1.39913 * 109.52259 * 0.02562 * 21 20 19 23 23 C 1.36312 * 132.16702 * 180.02562 * 22 21 20 24 24 C 1.35757 * 119.15531 * 180.02562 * 23 22 21 25 25 C 1.39962 * 119.35700 * 359.97438 * 24 23 22 26 26 N 1.31502 * 120.10369 * 0.02562 * 25 24 23 27 27 C 1.33381 * 120.85570 * 0.02562 * 26 25 24 28 28 C 1.47790 * 120.49729 * 312.53247 * 16 15 14 29 29 C 1.45505 * 126.40247 * 180.02562 * 9 7 2 30 30 H 1.08999 * 109.57147 * 93.36384 * 29 9 7 31 31 H 0.96998 * 119.99297 * 0.02562 * 1 2 3 32 32 H 1.09001 * 109.91439 * 55.65513 * 10 9 7 33 33 H 1.08997 * 110.08715 * 294.44274 * 10 9 7 34 34 H 1.08999 * 110.96336 * 219.42886 * 11 10 9 35 35 H 1.08992 * 110.99089 * 95.69709 * 11 10 9 36 36 H 1.08994 * 109.89415 * 65.10378 * 14 12 11 37 37 H 1.09002 * 109.95289 * 304.03452 * 14 12 11 38 38 H 1.08998 * 109.22901 * 291.48694 * 15 14 12 39 39 H 1.08999 * 109.19693 * 172.10615 * 15 14 12 40 40 H 1.07995 * 125.63698 * 0.07617 * 20 19 17 41 41 H 1.08003 * 120.42089 * 0.02562 * 23 22 21 42 42 H 1.07997 * 120.31837 * 179.97438 * 24 23 22 43 43 H 1.07998 * 119.94521 * 180.02562 * 25 24 23 44 44 H 1.09000 * 110.06527 * 170.19923 * 28 16 15 45 45 H 1.09000 * 110.07094 * 291.76284 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8916 2.3963 -1.2126 6 1 1.8915 2.3965 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 -0.1468 -2.5531 -0.0005 11 6 -0.4343 -4.0738 -0.1295 12 6 0.8688 -4.5879 -0.7621 13 1 0.8872 -4.3949 -1.8347 14 6 1.1978 -6.0414 -0.4641 15 6 2.5782 -6.3330 -1.0786 16 7 3.5607 -5.3360 -0.6431 17 6 4.7635 -5.7374 -0.1864 18 8 5.5448 -4.9224 0.2684 19 6 5.1309 -7.1556 -0.2374 20 6 4.8341 -8.0608 -1.2721 21 7 5.3247 -9.2311 -0.9593 22 7 5.9613 -9.1540 0.2843 23 6 6.6173 -10.0831 1.0356 24 6 7.1461 -9.7141 2.2302 25 6 7.0066 -8.3903 2.6628 26 7 6.3682 -7.5162 1.9160 27 6 5.8453 -7.8722 0.7417 28 6 3.2400 -3.8943 -0.6957 29 6 1.9081 -3.7215 0.0016 30 1 1.9982 -4.0797 1.0271 31 1 -0.4849 0.8401 -0.0004 32 1 -0.5795 -2.0203 -0.8473 33 1 -0.5667 -2.1735 0.9309 34 1 -1.2848 -4.2556 -0.7864 35 1 -0.5968 -4.5248 0.8494 36 1 0.4470 -6.6913 -0.9134 37 1 1.2301 -6.2021 0.6135 38 1 2.4997 -6.3088 -2.1655 39 1 2.9083 -7.3233 -0.7646 40 1 4.2914 -7.8271 -2.1761 41 1 6.7152 -11.0999 0.6849 42 1 7.6693 -10.4350 2.8409 43 1 7.4238 -8.0863 3.6114 44 1 4.0090 -3.3210 -0.1779 45 1 3.1615 -3.5661 -1.7321 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042184631.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:40 Heat of formation + Delta-G solvation = 132.714144 kcal Electronic energy + Delta-G solvation = -29914.537031 eV Core-core repulsion = 25935.672354 eV Total energy + Delta-G solvation = -3978.864676 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.76900 -39.96874 -38.47980 -37.82142 -35.23565 -34.38216 -32.80877 -31.59819 -31.19805 -30.27598 -28.87154 -28.28481 -25.29585 -24.79283 -24.48446 -23.40374 -22.33301 -21.96490 -20.14872 -19.79980 -19.21676 -18.27907 -17.67945 -17.12944 -16.58673 -16.43334 -15.92259 -15.45899 -14.87943 -14.74697 -14.51532 -14.30654 -14.13510 -13.78713 -13.49395 -13.30484 -13.12973 -13.01289 -12.87386 -12.54686 -12.14863 -11.80813 -11.79814 -11.64933 -11.37511 -11.20191 -10.86756 -10.71957 -10.69631 -10.16407 -10.05381 -10.00189 -9.88619 -9.75759 -9.62294 -9.52993 -9.39000 -8.56590 -8.35469 -8.16010 -6.78212 -5.65398 -2.98528 0.06615 0.42898 1.58488 1.96096 2.86679 3.12259 3.46327 3.48250 3.51838 3.53096 3.55943 3.74627 3.94206 4.43230 4.57331 4.59642 4.78150 4.86028 4.98069 5.03774 5.07193 5.12500 5.28797 5.47246 5.53656 5.57491 5.68634 5.76035 5.84183 5.84990 6.00649 6.05547 6.11522 6.16529 6.22662 6.25824 6.48999 6.58904 6.64255 6.82720 6.86981 6.96397 7.15617 7.28595 7.62382 7.66455 7.75417 7.88306 8.29819 8.55749 9.26235 9.89078 10.56024 11.47183 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.017455 B = 0.002961 C = 0.002702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1603.724946 B = 9454.281339 C =10359.298549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.008 4.008 3 Si 0.909 3.091 4 H -0.278 1.278 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.224 4.224 8 H 0.081 0.919 9 N -0.592 5.592 10 C 0.178 3.822 11 C -0.138 4.138 12 C -0.111 4.111 13 H 0.078 0.922 14 C -0.119 4.119 15 C 0.106 3.894 16 N -0.603 5.603 17 C 0.594 3.406 18 O -0.529 6.529 19 C -0.274 4.274 20 C 0.127 3.873 21 N -0.312 5.312 22 N -0.309 5.309 23 C 0.165 3.835 24 C -0.224 4.224 25 C 0.183 3.817 26 N -0.445 5.445 27 C 0.309 3.691 28 C 0.119 3.881 29 C 0.157 3.843 30 H 0.024 0.976 31 H 0.251 0.749 32 H 0.055 0.945 33 H 0.037 0.963 34 H 0.058 0.942 35 H 0.055 0.945 36 H 0.072 0.928 37 H 0.066 0.934 38 H 0.065 0.935 39 H 0.078 0.922 40 H 0.207 0.793 41 H 0.183 0.817 42 H 0.171 0.829 43 H 0.184 0.816 44 H 0.093 0.907 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.640 -25.384 0.860 27.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.204 4.204 3 Si 0.740 3.260 4 H -0.203 1.203 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.352 4.352 8 H 0.099 0.901 9 N -0.317 5.317 10 C 0.054 3.946 11 C -0.176 4.176 12 C -0.131 4.131 13 H 0.096 0.904 14 C -0.158 4.158 15 C -0.017 4.017 16 N -0.337 5.337 17 C 0.382 3.618 18 O -0.405 6.405 19 C -0.290 4.290 20 C -0.054 4.054 21 N -0.134 5.134 22 N -0.078 5.078 23 C 0.029 3.971 24 C -0.248 4.248 25 C 0.000 4.000 26 N -0.155 5.155 27 C 0.079 3.921 28 C -0.003 4.003 29 C 0.048 3.952 30 H 0.041 0.959 31 H 0.061 0.939 32 H 0.073 0.927 33 H 0.055 0.945 34 H 0.077 0.923 35 H 0.073 0.927 36 H 0.090 0.910 37 H 0.084 0.916 38 H 0.083 0.917 39 H 0.096 0.904 40 H 0.223 0.777 41 H 0.200 0.800 42 H 0.188 0.812 43 H 0.201 0.799 44 H 0.111 0.889 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 9.878 -24.932 0.709 26.827 hybrid contribution 0.359 0.718 0.058 0.804 sum 10.237 -24.215 0.767 26.301 Atomic orbital electron populations 1.69959 1.04880 1.24845 1.57368 1.24778 0.95678 0.97614 1.02335 0.86072 0.78980 0.83846 0.77138 1.20327 1.21833 1.21826 1.19120 0.90523 0.82254 1.43353 0.90147 1.44176 1.01638 0.99230 1.86665 1.21526 0.83725 0.88450 1.00949 1.22729 0.96008 0.99689 0.99222 1.22250 0.97364 0.93385 1.00128 0.90408 1.21802 0.95294 0.97475 1.01229 1.21873 0.89407 0.91641 0.98821 1.48047 1.13533 1.07695 1.64392 1.16828 0.81658 0.85720 0.77633 1.90823 1.50666 1.54007 1.45038 1.19492 1.15334 0.96652 0.97521 1.24228 0.94156 0.88490 0.98484 1.77588 1.19332 1.22397 0.94121 1.47007 1.36133 1.09146 1.15495 1.22130 0.89926 0.95187 0.89869 1.21932 1.06190 0.99639 0.97026 1.23619 0.89662 0.88521 0.98158 1.68298 1.10163 1.34723 1.02348 1.20349 0.96500 0.83197 0.92102 1.21615 0.99093 0.78216 1.01352 1.20881 0.91112 0.87497 0.95732 0.95906 0.93897 0.92664 0.94503 0.92286 0.92654 0.90966 0.91573 0.91696 0.90396 0.77678 0.80025 0.81172 0.79897 0.88896 0.91175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.45 10.44 55.49 0.58 -26.87 16 2 C -0.01 -0.23 5.49 -17.43 -0.10 -0.33 16 3 Si 0.91 22.77 29.55 -169.99 -5.02 17.75 16 4 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 6 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 7 C -0.22 -6.36 9.88 -15.06 -0.15 -6.50 16 8 H 0.08 2.25 7.41 -52.49 -0.39 1.86 16 9 N -0.59 -15.29 3.35 -163.16 -0.55 -15.84 16 10 C 0.18 4.34 5.45 -1.91 -0.01 4.33 16 11 C -0.14 -2.57 6.54 -25.15 -0.16 -2.74 16 12 C -0.11 -1.94 2.61 -89.51 -0.23 -2.17 16 13 H 0.08 1.37 8.14 -51.93 -0.42 0.94 16 14 C -0.12 -1.62 5.72 -26.79 -0.15 -1.77 16 15 C 0.11 1.34 5.10 -3.53 -0.02 1.32 16 16 N -0.60 -10.08 3.02 -174.58 -0.53 -10.61 16 17 C 0.59 10.78 7.54 -12.89 -0.10 10.68 16 18 O -0.53 -11.81 16.45 5.18 0.09 -11.72 16 19 C -0.27 -4.07 5.21 -104.65 -0.55 -4.62 16 20 C 0.13 1.45 9.54 -17.13 -0.16 1.28 16 21 N -0.31 -3.59 12.58 30.76 0.39 -3.21 16 22 N -0.31 -3.41 3.86 -11.97 -0.05 -3.46 16 23 C 0.16 1.04 11.29 -16.45 -0.19 0.86 16 24 C -0.22 -1.02 10.05 -39.82 -0.40 -1.42 16 25 C 0.18 1.40 11.28 -17.05 -0.19 1.20 16 26 N -0.44 -6.02 10.47 -12.00 -0.13 -6.14 16 27 C 0.31 4.36 7.87 -155.84 -1.23 3.13 16 28 C 0.12 2.38 5.68 -4.18 -0.02 2.36 16 29 C 0.16 3.35 2.74 -68.05 -0.19 3.16 16 30 H 0.02 0.54 7.93 -51.93 -0.41 0.13 16 31 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 32 H 0.06 1.48 7.21 -51.93 -0.37 1.11 16 33 H 0.04 0.99 7.77 -51.93 -0.40 0.59 16 34 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.05 0.98 8.12 -51.93 -0.42 0.56 16 36 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 37 H 0.07 0.96 7.99 -51.93 -0.41 0.55 16 38 H 0.06 0.69 8.13 -51.93 -0.42 0.26 16 39 H 0.08 0.86 4.90 -51.93 -0.25 0.61 16 40 H 0.21 1.65 7.20 -52.49 -0.38 1.28 16 41 H 0.18 0.46 8.06 -52.48 -0.42 0.04 16 42 H 0.17 0.03 8.06 -52.49 -0.42 -0.39 16 43 H 0.18 0.71 8.06 -52.49 -0.42 0.29 16 44 H 0.09 2.11 6.73 -51.93 -0.35 1.76 16 45 H 0.07 1.38 8.14 -51.93 -0.42 0.95 16 LS Contribution 361.48 15.07 5.45 5.45 Total: -1.00 -38.23 361.48 -9.53 -47.76 By element: Atomic # 1 Polarization: 4.02 SS G_CDS: -5.91 Total: -1.90 kcal Atomic # 6 Polarization: 12.63 SS G_CDS: -3.85 Total: 8.78 kcal Atomic # 7 Polarization: -65.84 SS G_CDS: -0.28 Total: -66.12 kcal Atomic # 8 Polarization: -11.81 SS G_CDS: 0.09 Total: -11.72 kcal Atomic # 14 Polarization: 22.77 SS G_CDS: -5.02 Total: 17.75 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -38.23 -9.53 -47.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042184631.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 180.469 kcal (2) G-P(sol) polarization free energy of solvation -38.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 142.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.755 kcal (6) G-S(sol) free energy of system = (1) + (5) 132.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds