Wall clock time and date at job start Sat Apr 11 2020 06:22:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86807 * 119.99954 * 2 1 4 4 H 1.48498 * 109.46945 * 274.99716 * 3 2 1 5 5 H 1.48497 * 109.46834 * 34.99735 * 3 2 1 6 6 H 1.48496 * 109.47017 * 154.99813 * 3 2 1 7 7 C 1.38807 * 120.00233 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00311 * 174.93805 * 7 2 1 9 9 N 1.36946 * 119.99765 * 354.93365 * 7 2 1 10 10 C 1.48149 * 126.39648 * 355.04467 * 9 7 2 11 11 C 1.55300 * 107.04471 * 175.02293 * 10 9 7 12 12 C 1.53699 * 101.84421 * 337.52722 * 11 10 9 13 13 H 1.09000 * 111.10889 * 281.43239 * 12 11 10 14 14 C 1.51980 * 115.01250 * 153.49462 * 12 11 10 15 15 C 1.53883 * 107.28649 * 184.54124 * 14 12 11 16 16 N 1.46597 * 110.70832 * 51.81592 * 15 14 12 17 17 C 1.34776 * 119.75538 * 132.27727 * 16 15 14 18 18 O 1.21559 * 120.00161 * 7.66180 * 17 16 15 19 19 C 1.47808 * 120.00080 * 187.66989 * 17 16 15 20 20 N 1.32292 * 120.58751 * 8.08101 * 19 17 16 21 21 C 1.32692 * 121.18314 * 179.97438 * 20 19 17 22 22 C 1.35481 * 122.11772 * 0.02562 * 21 20 19 23 23 N 1.36224 * 120.52392 * 359.97438 * 22 21 20 24 24 C 1.36157 * 133.93114 * 179.97438 * 23 22 21 25 25 C 1.35342 * 107.14152 * 180.02562 * 24 23 22 26 26 N 1.33562 * 108.61781 * 0.02562 * 25 24 23 27 27 C 1.31860 * 109.14102 * 359.73697 * 26 25 24 28 28 C 1.47898 * 119.97635 * 311.80403 * 16 15 14 29 29 C 1.45508 * 126.39526 * 175.06209 * 9 7 2 30 30 H 1.09005 * 109.57033 * 93.35000 * 29 9 7 31 31 H 0.97005 * 119.99541 * 0.02562 * 1 2 3 32 32 H 1.09004 * 109.92406 * 55.66799 * 10 9 7 33 33 H 1.09006 * 110.08614 * 294.46179 * 10 9 7 34 34 H 1.09001 * 110.96514 * 95.67592 * 11 10 9 35 35 H 1.08997 * 110.96351 * 219.38373 * 11 10 9 36 36 H 1.08994 * 109.89286 * 303.99107 * 14 12 11 37 37 H 1.09003 * 109.88772 * 65.09622 * 14 12 11 38 38 H 1.09006 * 109.22988 * 172.12378 * 15 14 12 39 39 H 1.09002 * 109.23364 * 291.49686 * 15 14 12 40 40 H 1.08002 * 118.94501 * 180.02562 * 21 20 19 41 41 H 1.07995 * 119.74026 * 179.97438 * 22 21 20 42 42 H 1.07997 * 126.42981 * 0.03431 * 24 23 22 43 43 H 1.08006 * 125.69146 * 179.97438 * 25 24 23 44 44 H 1.08994 * 110.46460 * 292.89576 * 28 16 15 45 45 H 1.09007 * 109.62844 * 171.36011 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.3921 2.1074 -1.3947 5 1 1.5045 2.6199 0.8030 6 1 3.5966 1.4120 0.5917 7 6 2.0103 -1.2021 0.0005 8 1 3.0872 -1.2039 -0.0820 9 7 1.3296 -2.3857 0.1058 10 6 -0.1263 -2.5457 0.3282 11 6 -0.4350 -4.0655 0.2467 12 6 0.7547 -4.5854 -0.5759 13 1 0.6169 -4.3813 -1.6377 14 6 1.1196 -6.0400 -0.3296 15 6 2.3892 -6.3377 -1.1466 16 7 3.4304 -5.3444 -0.8668 17 6 4.6872 -5.7503 -0.5982 18 8 4.9877 -6.9214 -0.7243 19 6 5.7001 -4.7716 -0.1501 20 7 5.3522 -3.5296 0.1441 21 6 6.2516 -2.6415 0.5479 22 6 7.5633 -2.9536 0.6797 23 7 8.0073 -4.2102 0.3974 24 6 9.2289 -4.8104 0.4318 25 6 9.0543 -6.0934 0.0378 26 7 7.7605 -6.2836 -0.2339 27 6 7.1039 -5.1604 -0.0192 28 6 3.1017 -3.9026 -0.8904 29 6 1.9013 -3.7210 0.0205 30 1 2.1448 -4.0786 1.0210 31 1 -0.4850 0.8401 -0.0004 32 1 -0.6809 -2.0122 -0.4439 33 1 -0.3990 -2.1636 1.3120 34 1 -0.4482 -4.5146 1.2399 35 1 -1.3762 -4.2450 -0.2727 36 1 1.3152 -6.1989 0.7309 37 1 0.3065 -6.6871 -0.6586 38 1 2.7596 -7.3291 -0.8859 39 1 2.1463 -6.3137 -2.2089 40 1 5.9276 -1.6375 0.7790 41 1 8.2626 -2.2003 1.0110 42 1 10.1622 -4.3493 0.7195 43 1 9.8316 -6.8388 -0.0441 44 1 2.8542 -3.5847 -1.9031 45 1 3.9478 -3.3279 -0.5132 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042237805.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:44 Heat of formation + Delta-G solvation = 138.682168 kcal Electronic energy + Delta-G solvation = -30614.864958 eV Core-core repulsion = 26636.259075 eV Total energy + Delta-G solvation = -3978.605883 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.19850 -40.22614 -38.59406 -38.07818 -35.13582 -34.58271 -32.89929 -31.38760 -30.69132 -29.75189 -29.15198 -28.34203 -25.98280 -24.50832 -23.63342 -23.36598 -22.56088 -21.76678 -20.30851 -19.86892 -19.27218 -18.76184 -17.75764 -16.69347 -16.38918 -16.12754 -15.81848 -15.73331 -15.03256 -14.80050 -14.68079 -14.21499 -14.06999 -13.90314 -13.75633 -13.46648 -13.25303 -13.05260 -12.90663 -12.47209 -12.00853 -11.84231 -11.67485 -11.54193 -11.22252 -10.90409 -10.79582 -10.68654 -10.42561 -10.34312 -10.12658 -10.01240 -9.78292 -9.72209 -9.57000 -9.20979 -8.68602 -8.62013 -8.44604 -8.26013 -6.80417 -5.67916 -3.03361 -0.11393 0.98470 2.07985 2.55061 2.70758 2.96071 3.37087 3.39759 3.44750 3.56070 3.74914 3.84741 4.05216 4.35468 4.49962 4.77601 4.85590 5.00854 5.11729 5.12284 5.25835 5.29426 5.47869 5.52144 5.68117 5.75871 5.78962 5.89126 5.92089 6.04775 6.15382 6.24537 6.25633 6.26850 6.31738 6.47891 6.55983 6.64837 6.73190 6.76350 7.11506 7.17329 7.26025 7.51675 7.58327 7.64433 7.69646 7.84670 8.25492 8.29572 9.20816 9.85107 10.54148 11.42165 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011166 B = 0.004483 C = 0.003275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2507.002393 B = 6244.105821 C = 8548.382429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.010 4.010 3 Si 0.907 3.093 4 H -0.291 1.291 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.218 4.218 8 H 0.080 0.920 9 N -0.590 5.590 10 C 0.171 3.829 11 C -0.137 4.137 12 C -0.117 4.117 13 H 0.076 0.924 14 C -0.117 4.117 15 C 0.112 3.888 16 N -0.581 5.581 17 C 0.570 3.430 18 O -0.511 6.511 19 C 0.184 3.816 20 N -0.398 5.398 21 C 0.032 3.968 22 C 0.029 3.971 23 N -0.355 5.355 24 C -0.083 4.083 25 C 0.029 3.971 26 N -0.437 5.437 27 C 0.192 3.808 28 C 0.048 3.952 29 C 0.164 3.836 30 H 0.024 0.976 31 H 0.251 0.749 32 H 0.068 0.932 33 H 0.027 0.973 34 H 0.054 0.946 35 H 0.058 0.942 36 H 0.066 0.934 37 H 0.073 0.927 38 H 0.087 0.913 39 H 0.065 0.935 40 H 0.191 0.809 41 H 0.177 0.823 42 H 0.190 0.810 43 H 0.188 0.812 44 H 0.063 0.937 45 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.811 -7.992 0.872 15.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.206 4.206 3 Si 0.738 3.262 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.347 4.347 8 H 0.098 0.902 9 N -0.315 5.315 10 C 0.047 3.953 11 C -0.176 4.176 12 C -0.137 4.137 13 H 0.095 0.905 14 C -0.156 4.156 15 C -0.010 4.010 16 N -0.313 5.313 17 C 0.354 3.646 18 O -0.385 6.385 19 C 0.019 3.981 20 N -0.113 5.113 21 C -0.107 4.107 22 C -0.096 4.096 23 N -0.029 5.029 24 C -0.216 4.216 25 C -0.124 4.124 26 N -0.156 5.156 27 C -0.055 4.055 28 C -0.074 4.074 29 C 0.056 3.944 30 H 0.041 0.959 31 H 0.061 0.939 32 H 0.086 0.914 33 H 0.045 0.955 34 H 0.072 0.928 35 H 0.076 0.924 36 H 0.085 0.915 37 H 0.091 0.909 38 H 0.105 0.895 39 H 0.083 0.917 40 H 0.208 0.792 41 H 0.194 0.806 42 H 0.207 0.793 43 H 0.205 0.795 44 H 0.081 0.919 45 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 12.815 -8.642 0.545 15.467 hybrid contribution 1.602 1.769 0.420 2.423 sum 14.417 -6.874 0.965 16.001 Atomic orbital electron populations 1.69931 1.04886 1.24788 1.57217 1.24792 0.95599 0.97514 1.02706 0.86182 0.78577 0.84064 0.77386 1.21813 1.21842 1.20776 1.19023 0.90569 0.82305 1.42754 0.90207 1.44161 1.03732 0.99293 1.84285 1.21622 0.84588 0.88857 1.00263 1.22708 0.96802 0.99532 0.98523 1.22351 0.97634 0.93631 1.00083 0.90532 1.21786 0.96116 0.97312 1.00347 1.21641 0.87676 0.92271 0.99404 1.48131 1.07268 1.09032 1.66875 1.17256 0.81751 0.86482 0.79117 1.90850 1.78974 1.16621 1.52050 1.22388 0.87736 0.91312 0.96649 1.68132 1.33574 1.00483 1.09074 1.22518 0.87342 1.01297 0.99509 1.22758 0.98404 0.85964 1.02449 1.42905 1.09316 1.09574 1.41103 1.22776 0.88071 0.95759 1.15043 1.22886 0.93975 0.94863 1.00630 1.70667 1.04200 1.21346 1.19418 1.22447 0.91921 0.85802 1.05324 1.23582 1.04469 0.78365 1.00976 1.20919 0.91232 0.87144 0.95144 0.95899 0.93888 0.91412 0.95519 0.92760 0.92362 0.91534 0.90888 0.89483 0.91701 0.79216 0.80596 0.79330 0.79547 0.91856 0.82074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.19 10.49 55.49 0.58 -25.61 16 2 C -0.01 -0.27 5.47 -17.43 -0.10 -0.37 16 3 Si 0.91 20.97 29.56 -169.99 -5.02 15.94 16 4 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 7 C -0.22 -5.66 9.84 -15.06 -0.15 -5.81 16 8 H 0.08 1.95 7.51 -52.49 -0.39 1.56 16 9 N -0.59 -14.34 3.35 -162.84 -0.54 -14.88 16 10 C 0.17 4.05 5.55 -1.92 -0.01 4.04 16 11 C -0.14 -2.55 6.54 -25.15 -0.16 -2.71 16 12 C -0.12 -2.07 2.60 -89.46 -0.23 -2.31 16 13 H 0.08 1.41 8.12 -51.93 -0.42 0.99 16 14 C -0.12 -1.71 5.72 -26.79 -0.15 -1.86 16 15 C 0.11 1.68 6.29 -3.53 -0.02 1.66 16 16 N -0.58 -9.91 3.00 -173.78 -0.52 -10.44 16 17 C 0.57 10.22 7.64 -12.35 -0.09 10.13 16 18 O -0.51 -10.13 15.66 5.31 0.08 -10.04 16 19 C 0.18 3.03 6.83 -80.54 -0.55 2.48 16 20 N -0.40 -6.12 6.20 -8.68 -0.05 -6.17 16 21 C 0.03 0.38 11.01 -18.16 -0.20 0.18 16 22 C 0.03 0.28 11.00 -16.59 -0.18 0.09 16 23 N -0.35 -4.18 2.95 -61.12 -0.18 -4.36 16 24 C -0.08 -0.76 11.80 -16.66 -0.20 -0.96 16 25 C 0.03 0.32 11.83 -17.83 -0.21 0.11 16 26 N -0.44 -6.92 10.77 -11.28 -0.12 -7.04 16 27 C 0.19 2.99 7.66 -153.97 -1.18 1.81 16 28 C 0.05 0.89 5.54 -3.89 -0.02 0.87 16 29 C 0.16 3.33 2.79 -67.76 -0.19 3.14 16 30 H 0.02 0.51 7.93 -51.93 -0.41 0.10 16 31 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 32 H 0.07 1.79 6.79 -51.93 -0.35 1.44 16 33 H 0.03 0.69 8.07 -51.93 -0.42 0.27 16 34 H 0.05 0.95 8.12 -51.93 -0.42 0.53 16 35 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.07 1.00 7.98 -51.93 -0.41 0.59 16 37 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.09 1.29 7.03 -51.93 -0.37 0.92 16 39 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.19 1.83 8.06 -52.49 -0.42 1.41 16 41 H 0.18 0.88 8.06 -52.49 -0.42 0.46 16 42 H 0.19 0.90 8.06 -52.49 -0.42 0.48 16 43 H 0.19 1.34 8.06 -52.48 -0.42 0.92 16 44 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 45 H 0.16 3.00 3.20 -99.93 -0.32 2.68 16 LS Contribution 359.30 15.07 5.41 5.41 Total: -1.00 -33.99 359.30 -10.06 -44.05 By element: Atomic # 1 Polarization: 8.69 SS G_CDS: -6.04 Total: 2.65 kcal Atomic # 6 Polarization: 14.14 SS G_CDS: -3.65 Total: 10.49 kcal Atomic # 7 Polarization: -67.67 SS G_CDS: -0.84 Total: -68.51 kcal Atomic # 8 Polarization: -10.13 SS G_CDS: 0.08 Total: -10.04 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -33.99 -10.06 -44.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042237805.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 182.729 kcal (2) G-P(sol) polarization free energy of solvation -33.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 148.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.047 kcal (6) G-S(sol) free energy of system = (1) + (5) 138.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds