Wall clock time and date at job start Sat Apr 11 2020 06:22:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86807 * 119.99954 * 2 1 4 4 H 1.48498 * 109.46945 * 274.99716 * 3 2 1 5 5 H 1.48497 * 109.46834 * 34.99735 * 3 2 1 6 6 H 1.48496 * 109.47017 * 154.99813 * 3 2 1 7 7 C 1.38807 * 120.00233 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00311 * 174.93805 * 7 2 1 9 9 N 1.36946 * 119.99765 * 354.93365 * 7 2 1 10 10 C 1.48149 * 126.39648 * 355.04467 * 9 7 2 11 11 C 1.55300 * 107.04471 * 175.02293 * 10 9 7 12 12 C 1.53699 * 101.84421 * 337.52722 * 11 10 9 13 13 H 1.09000 * 111.10889 * 281.43239 * 12 11 10 14 14 C 1.51980 * 115.01250 * 153.49462 * 12 11 10 15 15 C 1.53883 * 107.28649 * 184.54124 * 14 12 11 16 16 N 1.46597 * 110.70832 * 51.81592 * 15 14 12 17 17 C 1.34776 * 119.75538 * 132.27727 * 16 15 14 18 18 O 1.21559 * 120.00161 * 7.66180 * 17 16 15 19 19 C 1.47808 * 120.00080 * 187.66989 * 17 16 15 20 20 N 1.32292 * 120.58751 * 8.08101 * 19 17 16 21 21 C 1.32692 * 121.18314 * 179.97438 * 20 19 17 22 22 C 1.35481 * 122.11772 * 0.02562 * 21 20 19 23 23 N 1.36224 * 120.52392 * 359.97438 * 22 21 20 24 24 C 1.36157 * 133.93114 * 179.97438 * 23 22 21 25 25 C 1.35342 * 107.14152 * 180.02562 * 24 23 22 26 26 N 1.33562 * 108.61781 * 0.02562 * 25 24 23 27 27 C 1.31860 * 109.14102 * 359.73697 * 26 25 24 28 28 C 1.47898 * 119.97635 * 311.80403 * 16 15 14 29 29 C 1.45508 * 126.39526 * 175.06209 * 9 7 2 30 30 H 1.09005 * 109.57033 * 93.35000 * 29 9 7 31 31 H 0.97005 * 119.99541 * 0.02562 * 1 2 3 32 32 H 1.09004 * 109.92406 * 55.66799 * 10 9 7 33 33 H 1.09006 * 110.08614 * 294.46179 * 10 9 7 34 34 H 1.09001 * 110.96514 * 95.67592 * 11 10 9 35 35 H 1.08997 * 110.96351 * 219.38373 * 11 10 9 36 36 H 1.08994 * 109.89286 * 303.99107 * 14 12 11 37 37 H 1.09003 * 109.88772 * 65.09622 * 14 12 11 38 38 H 1.09006 * 109.22988 * 172.12378 * 15 14 12 39 39 H 1.09002 * 109.23364 * 291.49686 * 15 14 12 40 40 H 1.08002 * 118.94501 * 180.02562 * 21 20 19 41 41 H 1.07995 * 119.74026 * 179.97438 * 22 21 20 42 42 H 1.07997 * 126.42981 * 0.03431 * 24 23 22 43 43 H 1.08006 * 125.69146 * 179.97438 * 25 24 23 44 44 H 1.08994 * 110.46460 * 292.89576 * 28 16 15 45 45 H 1.09007 * 109.62844 * 171.36011 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.3921 2.1074 -1.3947 5 1 1.5045 2.6199 0.8030 6 1 3.5966 1.4120 0.5917 7 6 2.0103 -1.2021 0.0005 8 1 3.0872 -1.2039 -0.0820 9 7 1.3296 -2.3857 0.1058 10 6 -0.1263 -2.5457 0.3282 11 6 -0.4350 -4.0655 0.2467 12 6 0.7547 -4.5854 -0.5759 13 1 0.6169 -4.3813 -1.6377 14 6 1.1196 -6.0400 -0.3296 15 6 2.3892 -6.3377 -1.1466 16 7 3.4304 -5.3444 -0.8668 17 6 4.6872 -5.7503 -0.5982 18 8 4.9877 -6.9214 -0.7243 19 6 5.7001 -4.7716 -0.1501 20 7 5.3522 -3.5296 0.1441 21 6 6.2516 -2.6415 0.5479 22 6 7.5633 -2.9536 0.6797 23 7 8.0073 -4.2102 0.3974 24 6 9.2289 -4.8104 0.4318 25 6 9.0543 -6.0934 0.0378 26 7 7.7605 -6.2836 -0.2339 27 6 7.1039 -5.1604 -0.0192 28 6 3.1017 -3.9026 -0.8904 29 6 1.9013 -3.7210 0.0205 30 1 2.1448 -4.0786 1.0210 31 1 -0.4850 0.8401 -0.0004 32 1 -0.6809 -2.0122 -0.4439 33 1 -0.3990 -2.1636 1.3120 34 1 -0.4482 -4.5146 1.2399 35 1 -1.3762 -4.2450 -0.2727 36 1 1.3152 -6.1989 0.7309 37 1 0.3065 -6.6871 -0.6586 38 1 2.7596 -7.3291 -0.8859 39 1 2.1463 -6.3137 -2.2089 40 1 5.9276 -1.6375 0.7790 41 1 8.2626 -2.2003 1.0110 42 1 10.1622 -4.3493 0.7195 43 1 9.8316 -6.8388 -0.0441 44 1 2.8542 -3.5847 -1.9031 45 1 3.9478 -3.3279 -0.5132 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042237805.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:43 Heat of formation + Delta-G solvation = 117.329995 kcal Electronic energy + Delta-G solvation = -30615.790858 eV Core-core repulsion = 26636.259075 eV Total energy + Delta-G solvation = -3979.531783 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -44.09385 -41.55739 -39.82608 -39.37323 -36.68324 -35.58433 -34.56317 -32.96958 -31.72149 -30.83881 -30.57209 -29.96015 -27.15407 -26.25375 -24.96808 -24.43555 -23.74505 -22.84312 -21.74395 -21.52606 -20.62203 -19.70433 -18.92338 -18.50760 -17.38369 -17.24038 -17.11855 -16.65878 -16.61639 -16.31366 -15.86284 -15.64832 -15.42044 -15.12562 -14.88997 -14.79566 -14.53661 -14.25461 -14.08657 -13.72144 -13.67257 -13.40679 -13.08745 -12.96852 -12.69570 -12.64698 -12.41686 -12.12919 -11.98664 -11.79148 -11.54000 -11.44295 -11.37881 -11.26833 -11.17208 -10.64595 -10.11239 -9.92686 -9.71398 -9.24963 -8.79640 -7.71230 -5.09241 -1.09220 0.08546 1.21624 1.44923 1.51785 1.54268 1.62648 1.81139 1.83336 2.47199 2.56889 2.71753 2.87659 3.17088 3.45537 3.53723 3.64404 3.82035 3.96915 3.98112 4.06648 4.07521 4.33921 4.35464 4.36510 4.40264 4.46540 4.56557 4.67480 4.68975 4.81677 4.88825 4.95928 4.97181 5.12074 5.15808 5.20151 5.36930 5.44903 5.54997 5.61493 5.68065 5.70910 5.80699 5.87265 6.17087 6.29641 6.38725 6.72683 6.96595 7.17592 7.88204 8.57422 9.38235 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011166 B = 0.004483 C = 0.003275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2507.002393 B = 6244.105821 C = 8548.382429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C -0.072 4.072 3 Si 0.971 3.029 4 H -0.292 1.292 5 H -0.304 1.304 6 H -0.254 1.254 7 C -0.220 4.220 8 H 0.093 0.907 9 N -0.607 5.607 10 C 0.175 3.825 11 C -0.123 4.123 12 C -0.106 4.106 13 H 0.071 0.929 14 C -0.104 4.104 15 C 0.107 3.893 16 N -0.582 5.582 17 C 0.568 3.432 18 O -0.541 6.541 19 C 0.141 3.859 20 N -0.414 5.414 21 C 0.000 4.000 22 C 0.071 3.929 23 N -0.359 5.359 24 C -0.055 4.055 25 C 0.013 3.987 26 N -0.487 5.487 27 C 0.162 3.838 28 C 0.058 3.942 29 C 0.161 3.839 30 H 0.009 0.991 31 H 0.242 0.758 32 H 0.034 0.966 33 H -0.007 1.007 34 H 0.067 0.933 35 H 0.080 0.920 36 H 0.063 0.937 37 H 0.107 0.893 38 H 0.090 0.910 39 H 0.077 0.923 40 H 0.210 0.790 41 H 0.235 0.765 42 H 0.244 0.756 43 H 0.218 0.782 44 H 0.050 0.950 45 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.205 -7.819 1.428 18.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.606 5.606 2 C -0.264 4.264 3 Si 0.799 3.201 4 H -0.220 1.220 5 H -0.231 1.231 6 H -0.178 1.178 7 C -0.349 4.349 8 H 0.110 0.890 9 N -0.332 5.332 10 C 0.050 3.950 11 C -0.161 4.161 12 C -0.126 4.126 13 H 0.089 0.911 14 C -0.142 4.142 15 C -0.014 4.014 16 N -0.314 5.314 17 C 0.354 3.646 18 O -0.417 6.417 19 C -0.022 4.022 20 N -0.128 5.128 21 C -0.140 4.140 22 C -0.053 4.053 23 N -0.034 5.034 24 C -0.188 4.188 25 C -0.138 4.138 26 N -0.208 5.208 27 C -0.084 4.084 28 C -0.065 4.065 29 C 0.053 3.947 30 H 0.027 0.973 31 H 0.051 0.949 32 H 0.053 0.947 33 H 0.011 0.989 34 H 0.085 0.915 35 H 0.098 0.902 36 H 0.082 0.918 37 H 0.125 0.875 38 H 0.108 0.892 39 H 0.095 0.905 40 H 0.226 0.774 41 H 0.251 0.749 42 H 0.260 0.740 43 H 0.234 0.766 44 H 0.068 0.932 45 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 16.238 -8.526 1.094 18.373 hybrid contribution 0.755 1.727 0.313 1.910 sum 16.993 -6.800 1.407 18.357 Atomic orbital electron populations 1.70175 1.06494 1.24771 1.59126 1.25631 0.96425 1.00917 1.03427 0.85162 0.78480 0.79465 0.76946 1.21992 1.23134 1.17810 1.19472 0.91378 0.83065 1.40967 0.88950 1.44431 1.04178 1.00500 1.84090 1.21417 0.84347 0.92087 0.97115 1.22589 0.98164 0.95529 0.99815 1.22277 0.95798 0.95231 0.99284 0.91100 1.21725 0.96862 0.95399 1.00253 1.21799 0.87380 0.91981 1.00259 1.48144 1.07740 1.08598 1.66909 1.17568 0.82106 0.86618 0.78347 1.90804 1.79541 1.17856 1.53538 1.21920 0.88237 0.91634 1.00424 1.67729 1.35587 1.00653 1.08879 1.22905 0.88281 1.01494 1.01285 1.23553 0.98468 0.85655 0.97665 1.43247 1.09594 1.09864 1.40683 1.23670 0.88473 0.94889 1.11720 1.23602 0.93017 0.96838 1.00351 1.70587 1.06593 1.22596 1.21003 1.22277 0.92124 0.86920 1.07096 1.23393 1.03963 0.79589 0.99519 1.20960 0.93084 0.85681 0.94933 0.97323 0.94888 0.94746 0.98901 0.91467 0.90167 0.91824 0.87514 0.89213 0.90502 0.77365 0.74866 0.73985 0.76551 0.93210 0.81680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -56.70 10.49 21.65 0.23 -56.47 16 2 C -0.07 -3.95 5.47 84.86 0.46 -3.48 16 3 Si 0.97 43.42 29.56 68.60 2.03 45.45 16 4 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 5 H -0.30 -14.10 7.11 99.48 0.71 -13.39 16 6 H -0.25 -10.08 7.11 99.48 0.71 -9.38 16 7 C -0.22 -11.62 9.84 84.03 0.83 -10.79 16 8 H 0.09 4.51 7.51 -2.91 -0.02 4.49 16 9 N -0.61 -30.42 3.35 -669.09 -2.24 -32.65 16 10 C 0.18 8.65 5.55 86.85 0.48 9.14 16 11 C -0.12 -4.53 6.54 31.62 0.21 -4.33 16 12 C -0.11 -3.72 2.60 -10.04 -0.03 -3.75 16 13 H 0.07 2.59 8.12 -2.39 -0.02 2.57 16 14 C -0.10 -2.90 5.72 30.56 0.17 -2.72 16 15 C 0.11 3.18 6.29 86.66 0.54 3.73 16 16 N -0.58 -20.32 3.00 -821.99 -2.47 -22.79 16 17 C 0.57 21.13 7.64 86.78 0.66 21.79 16 18 O -0.54 -22.33 15.66 -3.90 -0.06 -22.40 16 19 C 0.14 4.73 6.83 43.69 0.30 5.03 16 20 N -0.41 -12.68 6.20 -181.37 -1.12 -13.80 16 21 C 0.00 0.01 11.01 83.93 0.92 0.93 16 22 C 0.07 1.05 11.00 83.37 0.92 1.97 16 23 N -0.36 -7.28 2.95 -347.30 -1.02 -8.31 16 24 C -0.05 -0.76 11.80 83.35 0.98 0.22 16 25 C 0.01 0.25 11.83 83.76 0.99 1.24 16 26 N -0.49 -15.28 10.77 -189.60 -2.04 -17.32 16 27 C 0.16 4.96 7.66 135.57 1.04 6.00 16 28 C 0.06 2.19 5.54 85.71 0.47 2.67 16 29 C 0.16 6.67 2.79 45.63 0.13 6.79 16 30 H 0.01 0.41 7.93 -2.38 -0.02 0.39 16 31 H 0.24 14.10 8.31 -92.70 -0.77 13.33 16 32 H 0.03 1.92 6.79 -2.39 -0.02 1.90 16 33 H -0.01 -0.40 8.07 -2.38 -0.02 -0.42 16 34 H 0.07 2.31 8.12 -2.39 -0.02 2.29 16 35 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 36 H 0.06 1.84 7.98 -2.39 -0.02 1.82 16 37 H 0.11 2.31 8.14 -2.39 -0.02 2.29 16 38 H 0.09 2.65 7.03 -2.38 -0.02 2.63 16 39 H 0.08 2.08 8.14 -2.39 -0.02 2.07 16 40 H 0.21 3.45 8.06 -2.91 -0.02 3.42 16 41 H 0.24 0.65 8.06 -2.91 -0.02 0.62 16 42 H 0.24 0.55 8.06 -2.91 -0.02 0.52 16 43 H 0.22 2.46 8.06 -2.91 -0.02 2.44 16 44 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 45 H 0.17 6.29 3.20 -97.17 -0.31 5.98 16 Total: -1.00 -81.18 359.30 3.10 -78.08 By element: Atomic # 1 Polarization: 15.06 SS G_CDS: 0.72 Total: 15.78 kcal Atomic # 6 Polarization: 25.34 SS G_CDS: 9.09 Total: 34.43 kcal Atomic # 7 Polarization: -142.67 SS G_CDS: -8.67 Total: -151.35 kcal Atomic # 8 Polarization: -22.33 SS G_CDS: -0.06 Total: -22.40 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.45 kcal Total: -81.18 3.10 -78.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042237805.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 195.412 kcal (2) G-P(sol) polarization free energy of solvation -81.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.082 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds