Wall clock time and date at job start Sat Apr 11 2020 06:19:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86795 * 120.00109 * 2 1 4 4 H 1.48500 * 109.47204 * 264.99058 * 3 2 1 5 5 H 1.48504 * 109.46931 * 24.99040 * 3 2 1 6 6 H 1.48497 * 109.47421 * 144.98965 * 3 2 1 7 7 C 1.38816 * 120.00167 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99940 * 188.06364 * 7 2 1 9 9 N 1.36937 * 119.99779 * 8.05100 * 7 2 1 10 10 C 1.47435 * 126.06371 * 6.55209 * 9 7 2 11 11 C 1.54495 * 107.15041 * 178.37005 * 10 9 7 12 12 C 1.56034 * 102.61452 * 337.15241 * 11 10 9 13 13 H 1.09001 * 113.50711 * 157.37053 * 12 11 10 14 14 C 1.53095 * 106.39005 * 281.62323 * 12 11 10 15 15 C 1.52834 * 110.57982 * 164.56083 * 14 12 11 16 16 N 1.47151 * 107.97868 * 302.65468 * 15 14 12 17 17 C 1.34776 * 121.22008 * 237.01705 * 16 15 14 18 18 O 1.21550 * 120.00605 * 172.87910 * 17 16 15 19 19 C 1.47882 * 119.99687 * 352.87825 * 17 16 15 20 20 C 1.39906 * 125.69242 * 173.12901 * 19 17 16 21 21 C 1.38585 * 107.59100 * 180.02562 * 20 19 17 22 22 N 1.34110 * 132.34048 * 179.97438 * 21 20 19 23 23 C 1.31137 * 120.84093 * 179.97438 * 22 21 20 24 24 C 1.40345 * 120.29666 * 0.03336 * 23 22 21 25 25 C 1.35455 * 119.46237 * 359.97438 * 24 23 22 26 26 N 1.36669 * 119.14424 * 359.97438 * 25 24 23 27 27 N 1.32375 * 125.69669 * 352.82209 * 19 17 16 28 28 C 1.46758 * 117.56440 * 57.29046 * 16 15 14 29 29 C 1.46469 * 126.05864 * 186.54276 * 9 7 2 30 30 H 1.08992 * 108.42620 * 90.10749 * 29 9 7 31 31 H 0.96990 * 120.00212 * 359.97438 * 1 2 3 32 32 H 1.09000 * 109.89932 * 297.75462 * 10 9 7 33 33 H 1.09005 * 109.89944 * 58.81141 * 10 9 7 34 34 H 1.08997 * 110.78497 * 218.87096 * 11 10 9 35 35 H 1.09003 * 110.77976 * 95.43209 * 11 10 9 36 36 H 1.09001 * 109.25678 * 44.27490 * 14 12 11 37 37 H 1.09000 * 109.22379 * 284.82378 * 14 12 11 38 38 H 1.09000 * 109.75980 * 183.03516 * 15 14 12 39 39 H 1.08996 * 109.80070 * 62.29835 * 15 14 12 40 40 H 1.07994 * 126.20175 * 359.97438 * 20 19 17 41 41 H 1.07997 * 119.84825 * 179.97438 * 23 22 21 42 42 H 1.08000 * 120.26656 * 179.97438 * 24 23 22 43 43 H 1.07999 * 120.42578 * 179.97438 * 25 24 23 44 44 H 1.09000 * 109.23027 * 67.78572 * 28 16 15 45 45 H 1.09007 * 109.22684 * 187.14416 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.6036 1.9852 -1.3947 5 1 1.3987 2.6809 0.5915 6 1 3.4908 1.4730 0.8032 7 6 2.0103 -1.2022 -0.0005 8 1 3.0823 -1.2068 0.1307 9 7 1.3357 -2.3821 -0.1672 10 6 -0.0957 -2.5255 -0.4901 11 6 -0.3847 -4.0378 -0.6176 12 6 1.0239 -4.6282 -0.9366 13 1 1.1197 -5.6845 -0.6851 14 6 1.2815 -4.3537 -2.4205 15 6 2.7616 -4.5403 -2.7524 16 7 3.5384 -3.6394 -1.8863 17 6 4.3765 -2.7210 -2.4064 18 8 4.9083 -1.9035 -1.6809 19 6 4.6491 -2.7078 -3.8598 20 6 5.3849 -1.7339 -4.5435 21 6 5.4053 -2.0882 -5.8832 22 7 5.9606 -1.5147 -6.9608 23 6 5.8371 -2.0556 -8.1490 24 6 5.1173 -3.2494 -8.3121 25 6 4.5513 -3.8390 -7.2319 26 7 4.6950 -3.2564 -6.0040 27 7 4.2424 -3.6185 -4.7302 28 6 3.3718 -3.7817 -0.4351 29 6 1.9084 -3.7257 -0.0564 30 1 1.8152 -4.0556 0.9782 31 1 -0.4850 0.8399 0.0004 32 1 -0.7009 -2.0980 0.3094 33 1 -0.3158 -2.0222 -1.4316 34 1 -1.0793 -4.2312 -1.4350 35 1 -0.7686 -4.4386 0.3206 36 1 0.9872 -3.3303 -2.6532 37 1 0.6886 -5.0435 -3.0213 38 1 2.9392 -4.2898 -3.7983 39 1 3.0543 -5.5736 -2.5663 40 1 5.8515 -0.8635 -4.1067 41 1 6.2905 -1.5798 -9.0060 42 1 5.0155 -3.6942 -9.2910 43 1 3.9937 -4.7576 -7.3397 44 1 3.7883 -4.7378 -0.1180 45 1 3.9041 -2.9745 0.0682 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042284094.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:39 Heat of formation + Delta-G solvation = 140.668899 kcal Electronic energy + Delta-G solvation = -30687.782124 eV Core-core repulsion = 26709.262392 eV Total energy + Delta-G solvation = -3978.519732 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.46762 -39.98488 -38.44657 -37.55364 -35.01515 -34.24003 -32.79258 -31.65135 -30.94578 -29.32985 -29.11665 -28.32471 -25.66986 -24.67993 -24.22718 -23.44025 -22.44424 -22.09430 -19.96856 -19.73100 -18.57694 -18.17114 -17.78533 -16.73336 -16.51070 -16.25366 -15.63325 -15.39810 -14.96090 -14.68492 -14.54157 -14.07653 -13.95827 -13.74724 -13.48882 -13.23550 -13.11410 -12.89243 -12.71776 -12.55817 -11.97500 -11.71989 -11.48554 -11.43079 -11.33035 -10.93412 -10.84548 -10.71902 -10.61934 -10.13338 -10.02308 -9.89270 -9.83030 -9.71796 -9.62806 -9.42364 -9.32740 -8.47186 -8.18977 -8.06875 -6.68909 -5.56921 -2.90232 0.25755 0.53490 1.74526 1.88016 3.14965 3.19013 3.55081 3.59522 3.63582 3.64752 3.66218 3.89680 4.09112 4.55108 4.64995 4.67657 4.97406 5.05808 5.16466 5.27072 5.28800 5.40372 5.52195 5.56713 5.64524 5.74039 5.77080 5.83383 5.94834 6.02287 6.07873 6.13315 6.18558 6.28908 6.32179 6.42377 6.46579 6.54205 6.66392 6.76406 6.97871 7.09960 7.13645 7.36981 7.56990 7.78246 7.81471 7.98094 8.37698 8.51133 9.35596 9.97305 10.61414 11.54411 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.012030 B = 0.004162 C = 0.003516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2326.882931 B = 6726.688909 C = 7962.561533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.008 4.008 3 Si 0.905 3.095 4 H -0.290 1.290 5 H -0.294 1.294 6 H -0.280 1.280 7 C -0.215 4.215 8 H 0.085 0.915 9 N -0.587 5.587 10 C 0.174 3.826 11 C -0.141 4.141 12 C -0.102 4.102 13 H 0.076 0.924 14 C -0.120 4.120 15 C 0.091 3.909 16 N -0.577 5.577 17 C 0.596 3.404 18 O -0.509 6.509 19 C 0.093 3.907 20 C -0.197 4.197 21 C 0.248 3.752 22 N -0.455 5.455 23 C 0.175 3.825 24 C -0.227 4.227 25 C 0.162 3.838 26 N -0.312 5.312 27 N -0.279 5.279 28 C 0.112 3.888 29 C 0.154 3.846 30 H 0.029 0.971 31 H 0.249 0.751 32 H 0.058 0.942 33 H 0.027 0.973 34 H 0.057 0.943 35 H 0.056 0.944 36 H 0.077 0.923 37 H 0.060 0.940 38 H 0.116 0.884 39 H 0.062 0.938 40 H 0.173 0.827 41 H 0.180 0.820 42 H 0.167 0.833 43 H 0.180 0.820 44 H 0.059 0.941 45 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.374 -13.487 -17.153 23.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.204 4.204 3 Si 0.736 3.264 4 H -0.218 1.218 5 H -0.221 1.221 6 H -0.205 1.205 7 C -0.343 4.343 8 H 0.102 0.898 9 N -0.312 5.312 10 C 0.049 3.951 11 C -0.180 4.180 12 C -0.122 4.122 13 H 0.094 0.906 14 C -0.159 4.159 15 C -0.032 4.032 16 N -0.309 5.309 17 C 0.380 3.620 18 O -0.381 6.381 19 C -0.066 4.066 20 C -0.228 4.228 21 C 0.022 3.978 22 N -0.166 5.166 23 C -0.011 4.011 24 C -0.251 4.251 25 C 0.028 3.972 26 N -0.084 5.084 27 N -0.109 5.109 28 C -0.011 4.011 29 C 0.045 3.955 30 H 0.046 0.954 31 H 0.059 0.941 32 H 0.076 0.924 33 H 0.045 0.955 34 H 0.076 0.924 35 H 0.074 0.926 36 H 0.095 0.905 37 H 0.079 0.921 38 H 0.133 0.867 39 H 0.081 0.919 40 H 0.190 0.810 41 H 0.197 0.803 42 H 0.184 0.816 43 H 0.197 0.803 44 H 0.078 0.922 45 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 7.386 -13.056 -16.338 22.180 hybrid contribution 0.161 0.829 -0.337 0.909 sum 7.546 -12.227 -16.675 22.011 Atomic orbital electron populations 1.69960 1.04865 1.24750 1.57668 1.24702 0.95499 0.97521 1.02658 0.86211 0.78716 0.83653 0.77803 1.21760 1.22089 1.20517 1.19104 0.91319 0.82285 1.41574 0.89763 1.44270 1.05450 0.99283 1.82209 1.21256 0.85634 0.88552 0.99648 1.23127 0.95400 0.99562 0.99873 1.22387 0.96974 0.97759 0.95044 0.90573 1.21819 0.94921 1.03035 0.96077 1.22358 0.91336 0.92963 0.96576 1.47634 1.41008 1.34511 1.07712 1.16812 0.80315 0.81315 0.83595 1.90826 1.51573 1.36877 1.58863 1.22354 0.96123 0.93186 0.94935 1.21033 1.09275 1.04315 0.88159 1.20513 0.95577 0.86555 0.95166 1.68247 1.19623 1.30878 0.97860 1.23415 0.91804 0.91269 0.94641 1.21828 1.04039 0.99563 0.99677 1.22081 0.96330 0.98241 0.80526 1.47505 1.35236 1.18389 1.07278 1.78057 1.24516 1.23182 0.85105 1.21540 0.98824 1.01628 0.79063 1.20680 0.90700 0.88026 0.96062 0.95414 0.94111 0.92403 0.95502 0.92418 0.92572 0.90475 0.92108 0.86683 0.91946 0.80974 0.80333 0.81553 0.80321 0.92245 0.88389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -28.09 10.56 55.49 0.59 -27.51 16 2 C -0.01 -0.24 5.45 -17.43 -0.09 -0.34 16 3 Si 0.91 24.11 29.56 -169.99 -5.02 19.09 16 4 H -0.29 -7.86 7.11 56.52 0.40 -7.46 16 5 H -0.29 -7.77 7.11 56.52 0.40 -7.37 16 6 H -0.28 -7.37 7.11 56.52 0.40 -6.97 16 7 C -0.21 -6.15 9.70 -15.06 -0.15 -6.29 16 8 H 0.08 2.46 6.24 -52.49 -0.33 2.14 16 9 N -0.59 -14.87 3.20 -164.42 -0.53 -15.39 16 10 C 0.17 4.23 4.66 -2.75 -0.01 4.21 16 11 C -0.14 -2.61 6.33 -24.32 -0.15 -2.76 16 12 C -0.10 -1.72 3.68 -88.42 -0.33 -2.05 16 13 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 14 C -0.12 -1.97 5.04 -26.77 -0.13 -2.10 16 15 C 0.09 1.41 6.17 -3.77 -0.02 1.39 16 16 N -0.58 -10.76 2.97 -175.19 -0.52 -11.28 16 17 C 0.60 12.16 7.71 -12.31 -0.09 12.06 16 18 O -0.51 -11.99 16.13 5.32 0.09 -11.90 16 19 C 0.09 1.66 6.79 -83.06 -0.56 1.09 16 20 C -0.20 -3.36 10.66 -38.83 -0.41 -3.78 16 21 C 0.25 3.65 7.90 -155.42 -1.23 2.43 16 22 N -0.46 -5.67 10.48 -12.22 -0.13 -5.80 16 23 C 0.17 1.30 11.27 -17.06 -0.19 1.10 16 24 C -0.23 -1.23 10.05 -39.78 -0.40 -1.63 16 25 C 0.16 1.29 11.30 -16.39 -0.19 1.10 16 26 N -0.31 -4.08 3.90 -12.20 -0.05 -4.13 16 27 N -0.28 -4.28 9.12 33.23 0.30 -3.98 16 28 C 0.11 2.14 5.68 -4.77 -0.03 2.11 16 29 C 0.15 3.12 2.97 -68.30 -0.20 2.92 16 30 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.25 7.42 8.31 -40.82 -0.34 7.09 16 32 H 0.06 1.59 7.05 -51.93 -0.37 1.22 16 33 H 0.03 0.72 7.60 -51.93 -0.39 0.33 16 34 H 0.06 0.96 7.97 -51.93 -0.41 0.55 16 35 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.08 1.57 6.86 -51.93 -0.36 1.21 16 37 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 38 H 0.12 1.78 4.11 -75.52 -0.31 1.47 16 39 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 40 H 0.17 2.90 8.06 -52.49 -0.42 2.48 16 41 H 0.18 0.59 8.06 -52.49 -0.42 0.16 16 42 H 0.17 0.20 8.06 -52.49 -0.42 -0.23 16 43 H 0.18 0.79 8.06 -52.49 -0.42 0.36 16 44 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 45 H 0.10 2.15 5.51 -51.93 -0.29 1.86 16 LS Contribution 357.34 15.07 5.39 5.39 Total: -1.00 -36.60 357.34 -9.90 -46.50 By element: Atomic # 1 Polarization: 5.35 SS G_CDS: -5.82 Total: -0.46 kcal Atomic # 6 Polarization: 13.67 SS G_CDS: -4.20 Total: 9.47 kcal Atomic # 7 Polarization: -67.75 SS G_CDS: -0.33 Total: -68.08 kcal Atomic # 8 Polarization: -11.99 SS G_CDS: 0.09 Total: -11.90 kcal Atomic # 14 Polarization: 24.11 SS G_CDS: -5.02 Total: 19.09 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -36.60 -9.90 -46.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042284094.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 187.171 kcal (2) G-P(sol) polarization free energy of solvation -36.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 150.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.502 kcal (6) G-S(sol) free energy of system = (1) + (5) 140.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds