Wall clock time and date at job start Sat Apr 11 2020 06:19:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31610 * 1 3 3 Si 1.86800 * 120.00126 * 2 1 4 4 H 1.48492 * 109.47471 * 240.00191 * 3 2 1 5 5 H 1.48502 * 109.47057 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46800 * 119.99989 * 3 2 1 7 7 C 1.38814 * 119.99989 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00012 * 180.02562 * 7 2 1 9 9 N 1.36930 * 119.99891 * 359.97438 * 7 2 1 10 10 C 1.47438 * 126.06119 * 0.02816 * 9 7 2 11 11 C 1.54512 * 107.14907 * 181.60197 * 10 9 7 12 12 C 1.56027 * 102.61113 * 22.84572 * 11 10 9 13 13 H 1.08996 * 112.85917 * 202.93432 * 12 11 10 14 14 C 1.53097 * 106.39795 * 78.37910 * 12 11 10 15 15 C 1.52837 * 110.57320 * 195.41318 * 14 12 11 16 16 N 1.47073 * 107.95252 * 57.35097 * 15 14 12 17 17 C 1.34775 * 121.15948 * 122.74886 * 16 15 14 18 18 O 1.21552 * 119.99828 * 174.35401 * 17 16 15 19 19 C 1.47880 * 120.00301 * 354.35942 * 17 16 15 20 20 C 1.39898 * 125.69387 * 185.23932 * 19 17 16 21 21 C 1.38589 * 107.59065 * 179.97438 * 20 19 17 22 22 N 1.34111 * 132.33809 * 179.97438 * 21 20 19 23 23 C 1.31129 * 120.84027 * 180.02562 * 22 21 20 24 24 C 1.40345 * 120.29891 * 359.97438 * 23 22 21 25 25 C 1.35464 * 119.46107 * 0.02819 * 24 23 22 26 26 N 1.36662 * 119.14000 * 359.97438 * 25 24 23 27 27 N 1.32371 * 125.69115 * 4.93756 * 19 17 16 28 28 C 1.46758 * 117.62506 * 302.69030 * 16 15 14 29 29 C 1.46476 * 126.06128 * 180.02562 * 9 7 2 30 30 H 1.09002 * 108.41815 * 269.25860 * 29 9 7 31 31 H 0.97007 * 120.00467 * 359.97438 * 1 2 3 32 32 H 1.09000 * 109.90249 * 300.98098 * 10 9 7 33 33 H 1.08998 * 109.90219 * 62.22515 * 10 9 7 34 34 H 1.08995 * 110.77816 * 141.12238 * 11 10 9 35 35 H 1.08989 * 110.78065 * 264.56320 * 11 10 9 36 36 H 1.08991 * 109.25610 * 315.70357 * 14 12 11 37 37 H 1.08999 * 109.25123 * 75.13553 * 14 12 11 38 38 H 1.09001 * 109.76002 * 176.97236 * 15 14 12 39 39 H 1.08996 * 109.76301 * 297.68535 * 15 14 12 40 40 H 1.07997 * 126.20906 * 359.93654 * 20 19 17 41 41 H 1.07999 * 119.85408 * 180.02562 * 23 22 21 42 42 H 1.08002 * 120.27124 * 180.02562 * 24 23 22 43 43 H 1.07992 * 120.42419 * 180.02562 * 25 24 23 44 44 H 1.08995 * 109.22780 * 292.23638 * 28 16 15 45 45 H 1.08997 * 109.22957 * 172.83196 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1038 1.6965 -1.2124 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6963 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3880 -0.0005 10 6 -0.1407 -2.5437 -0.0006 11 6 -0.4379 -4.0593 0.0407 12 6 0.8718 -4.6468 0.6524 13 1 1.0213 -5.6973 0.4033 14 6 0.7964 -4.3928 2.1602 15 6 2.1697 -4.5770 2.8052 16 7 3.1088 -3.6599 2.1420 17 6 3.8013 -2.7422 2.8452 18 8 4.6463 -2.0646 2.2935 19 6 3.5333 -2.5596 4.2880 20 6 4.1033 -1.5784 5.1063 21 6 3.5920 -1.7491 6.3831 22 7 3.7988 -1.0925 7.5341 23 6 3.1827 -1.4535 8.6339 24 6 2.2922 -2.5382 8.6233 25 6 2.0743 -3.2101 7.4674 26 7 2.7284 -2.8147 6.3344 27 7 2.7098 -3.2937 5.0195 28 6 3.2654 -3.7808 0.6878 29 6 1.9198 -3.7268 -0.0005 30 1 2.0473 -4.0470 -1.0346 31 1 -0.4851 0.8401 0.0004 32 1 -0.5654 -2.0582 0.8781 33 1 -0.5600 -2.1079 -0.9074 34 1 -1.2927 -4.2684 0.6838 35 1 -0.6040 -4.4483 -0.9638 36 1 0.4501 -3.3745 2.3363 37 1 0.0920 -5.0938 2.6080 38 1 2.1123 -4.3412 3.8679 39 1 2.5035 -5.6062 2.6738 40 1 4.8134 -0.8250 4.7991 41 1 3.3608 -0.9132 9.5520 42 1 1.7847 -2.8349 9.5294 43 1 1.3920 -4.0467 7.4414 44 1 3.7492 -4.7297 0.4565 45 1 3.8877 -2.9629 0.3245 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042284096.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:46 Heat of formation + Delta-G solvation = 142.332795 kcal Electronic energy + Delta-G solvation = -30857.547778 eV Core-core repulsion = 26879.100197 eV Total energy + Delta-G solvation = -3978.447580 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.41358 -39.97377 -38.41731 -37.53660 -35.01219 -34.18812 -32.80198 -31.63962 -30.92300 -29.29041 -29.09355 -28.31922 -25.64218 -24.69211 -24.20902 -23.40803 -22.43625 -22.05765 -19.96137 -19.71185 -18.52903 -18.15897 -17.77826 -16.71340 -16.48922 -16.19369 -15.59904 -15.38659 -14.94209 -14.69637 -14.49635 -14.16286 -13.94881 -13.69759 -13.50008 -13.19078 -13.07686 -12.86085 -12.73643 -12.52347 -11.94462 -11.73718 -11.46285 -11.40895 -11.28797 -10.91194 -10.82118 -10.73574 -10.58119 -10.12668 -10.01761 -9.86208 -9.81721 -9.64619 -9.64074 -9.50121 -9.27588 -8.48332 -8.17479 -8.03492 -6.72574 -5.60199 -2.92143 0.31065 0.59034 1.78837 1.92581 3.19224 3.22270 3.52989 3.55352 3.61500 3.68958 3.71989 3.93199 4.14197 4.59607 4.62460 4.72025 5.00637 5.10025 5.18293 5.30384 5.33834 5.41229 5.54682 5.58749 5.65346 5.76480 5.77475 5.84305 5.97310 6.04401 6.10601 6.17224 6.20686 6.29953 6.33401 6.46831 6.49988 6.58878 6.66004 6.77691 7.00752 7.13535 7.19854 7.42274 7.66744 7.67900 7.83090 7.94110 8.34507 8.51998 9.33077 9.94322 10.58956 11.52035 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011112 B = 0.004468 C = 0.003802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2519.268065 B = 6265.418216 C = 7362.657231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.007 4.007 3 Si 0.904 3.096 4 H -0.285 1.285 5 H -0.293 1.293 6 H -0.283 1.283 7 C -0.216 4.216 8 H 0.081 0.919 9 N -0.589 5.589 10 C 0.179 3.821 11 C -0.144 4.144 12 C -0.103 4.103 13 H 0.075 0.925 14 C -0.117 4.117 15 C 0.081 3.919 16 N -0.575 5.575 17 C 0.600 3.400 18 O -0.516 6.516 19 C 0.096 3.904 20 C -0.197 4.197 21 C 0.249 3.751 22 N -0.456 5.456 23 C 0.175 3.825 24 C -0.228 4.228 25 C 0.163 3.837 26 N -0.312 5.312 27 N -0.279 5.279 28 C 0.114 3.886 29 C 0.154 3.846 30 H 0.029 0.971 31 H 0.250 0.750 32 H 0.044 0.956 33 H 0.041 0.959 34 H 0.058 0.942 35 H 0.054 0.946 36 H 0.078 0.922 37 H 0.059 0.941 38 H 0.127 0.873 39 H 0.061 0.939 40 H 0.172 0.828 41 H 0.179 0.821 42 H 0.167 0.833 43 H 0.180 0.820 44 H 0.059 0.941 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.675 -12.016 17.149 21.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.202 4.202 3 Si 0.734 3.266 4 H -0.211 1.211 5 H -0.219 1.219 6 H -0.209 1.209 7 C -0.345 4.345 8 H 0.099 0.901 9 N -0.314 5.314 10 C 0.055 3.945 11 C -0.182 4.182 12 C -0.123 4.123 13 H 0.094 0.906 14 C -0.156 4.156 15 C -0.043 4.043 16 N -0.307 5.307 17 C 0.384 3.616 18 O -0.390 6.390 19 C -0.062 4.062 20 C -0.228 4.228 21 C 0.023 3.977 22 N -0.167 5.167 23 C -0.011 4.011 24 C -0.252 4.252 25 C 0.028 3.972 26 N -0.083 5.083 27 N -0.108 5.108 28 C -0.009 4.009 29 C 0.045 3.955 30 H 0.046 0.954 31 H 0.060 0.940 32 H 0.062 0.938 33 H 0.059 0.941 34 H 0.076 0.924 35 H 0.073 0.927 36 H 0.097 0.903 37 H 0.078 0.922 38 H 0.144 0.856 39 H 0.080 0.920 40 H 0.190 0.810 41 H 0.196 0.804 42 H 0.184 0.816 43 H 0.197 0.803 44 H 0.077 0.923 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 1.956 -11.670 16.426 20.244 hybrid contribution 0.019 0.884 0.147 0.896 sum 1.976 -10.786 16.573 19.872 Atomic orbital electron populations 1.69950 1.04818 1.24840 1.57757 1.24697 0.95569 0.97454 1.02505 0.86296 0.78548 0.83439 0.78279 1.21147 1.21868 1.20903 1.18988 0.90546 0.82073 1.42851 0.90148 1.44284 1.01420 0.99220 1.86500 1.21206 0.84305 0.88280 1.00731 1.23166 0.96136 0.99741 0.99174 1.22411 0.97112 0.97722 0.95056 0.90635 1.21769 0.95780 1.03089 0.94914 1.22573 0.89183 0.92394 1.00147 1.47613 1.41291 1.33646 1.08121 1.16801 0.81874 0.80239 0.82674 1.90797 1.33306 1.45830 1.69043 1.22313 0.94236 0.94443 0.95257 1.21001 1.08838 1.05029 0.87919 1.20506 0.93840 0.88545 0.94813 1.68238 1.24161 1.27210 0.97056 1.23404 0.89169 0.92338 0.96217 1.21824 1.04785 0.99949 0.98619 1.22088 0.93973 0.98658 0.82439 1.47579 1.29426 1.22913 1.08399 1.77852 1.24978 1.23221 0.84791 1.21503 0.99230 1.01846 0.78274 1.20704 0.91012 0.87934 0.95834 0.95400 0.94026 0.93824 0.94116 0.92374 0.92746 0.90336 0.92241 0.85634 0.92038 0.81027 0.80361 0.81579 0.80331 0.92257 0.88486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.99 10.38 55.49 0.58 -27.41 16 2 C -0.01 -0.20 5.49 -17.43 -0.10 -0.29 16 3 Si 0.90 23.84 29.55 -169.99 -5.02 18.81 16 4 H -0.28 -7.38 7.11 56.52 0.40 -6.98 16 5 H -0.29 -7.69 7.11 56.52 0.40 -7.29 16 6 H -0.28 -7.59 7.11 56.52 0.40 -7.18 16 7 C -0.22 -6.17 9.70 -15.06 -0.15 -6.31 16 8 H 0.08 2.33 6.51 -52.48 -0.34 1.99 16 9 N -0.59 -14.88 3.20 -164.43 -0.53 -15.41 16 10 C 0.18 4.36 4.61 -2.74 -0.01 4.35 16 11 C -0.14 -2.66 6.33 -24.32 -0.15 -2.81 16 12 C -0.10 -1.76 3.68 -88.44 -0.33 -2.08 16 13 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 14 C -0.12 -1.95 5.04 -26.76 -0.13 -2.08 16 15 C 0.08 1.27 6.33 -3.81 -0.02 1.25 16 16 N -0.58 -10.90 2.96 -175.28 -0.52 -11.42 16 17 C 0.60 12.49 7.72 -12.31 -0.10 12.39 16 18 O -0.52 -12.18 16.37 5.32 0.09 -12.09 16 19 C 0.10 1.79 6.85 -83.07 -0.57 1.22 16 20 C -0.20 -3.49 10.66 -38.83 -0.41 -3.90 16 21 C 0.25 3.83 7.90 -155.42 -1.23 2.60 16 22 N -0.46 -5.93 10.48 -12.22 -0.13 -6.06 16 23 C 0.17 1.39 11.27 -17.06 -0.19 1.20 16 24 C -0.23 -1.38 10.05 -39.78 -0.40 -1.78 16 25 C 0.16 1.40 11.30 -16.39 -0.19 1.21 16 26 N -0.31 -4.29 3.90 -12.20 -0.05 -4.34 16 27 N -0.28 -4.50 8.98 33.23 0.30 -4.20 16 28 C 0.11 2.20 5.67 -4.79 -0.03 2.17 16 29 C 0.15 3.12 2.96 -68.32 -0.20 2.92 16 30 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 32 H 0.04 1.19 7.04 -51.93 -0.37 0.82 16 33 H 0.04 1.11 7.57 -51.93 -0.39 0.71 16 34 H 0.06 0.98 7.97 -51.93 -0.41 0.56 16 35 H 0.05 0.95 8.14 -51.94 -0.42 0.52 16 36 H 0.08 1.63 6.85 -51.93 -0.36 1.28 16 37 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.13 1.97 3.71 -116.97 -0.43 1.53 16 39 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.17 2.98 8.06 -52.49 -0.42 2.56 16 41 H 0.18 0.67 8.06 -52.49 -0.42 0.25 16 42 H 0.17 0.29 8.06 -52.49 -0.42 -0.13 16 43 H 0.18 0.91 8.06 -52.49 -0.42 0.48 16 44 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 45 H 0.10 2.14 5.57 -51.93 -0.29 1.85 16 LS Contribution 357.33 15.07 5.38 5.38 Total: -1.00 -36.42 357.33 -10.06 -46.48 By element: Atomic # 1 Polarization: 6.17 SS G_CDS: -5.96 Total: 0.21 kcal Atomic # 6 Polarization: 14.26 SS G_CDS: -4.21 Total: 10.05 kcal Atomic # 7 Polarization: -68.51 SS G_CDS: -0.35 Total: -68.85 kcal Atomic # 8 Polarization: -12.18 SS G_CDS: 0.09 Total: -12.09 kcal Atomic # 14 Polarization: 23.84 SS G_CDS: -5.02 Total: 18.81 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -36.42 -10.06 -46.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042284096.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 188.818 kcal (2) G-P(sol) polarization free energy of solvation -36.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 152.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.485 kcal (6) G-S(sol) free energy of system = (1) + (5) 142.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds