Wall clock time and date at job start Sat Apr 11 2020 06:19:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86803 * 119.99584 * 2 1 4 4 H 1.48499 * 109.46957 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46962 * 300.00380 * 3 2 1 6 6 H 1.48496 * 109.47257 * 59.99979 * 3 2 1 7 7 C 1.38807 * 120.00056 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99461 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00355 * 359.97438 * 7 2 1 10 10 C 1.48160 * 126.39731 * 0.02784 * 9 7 2 11 11 C 1.55291 * 107.04141 * 174.99788 * 10 9 7 12 12 C 1.53700 * 101.81987 * 337.55741 * 11 10 9 13 13 H 1.09001 * 111.10541 * 280.63350 * 12 11 10 14 14 C 1.51978 * 115.00687 * 153.46291 * 12 11 10 15 15 C 1.53885 * 107.28787 * 184.55440 * 14 12 11 16 16 N 1.46598 * 110.71248 * 51.80631 * 15 14 12 17 17 C 1.34773 * 119.75537 * 132.26474 * 16 15 14 18 18 O 1.21550 * 119.99419 * 2.80051 * 17 16 15 19 19 C 1.47879 * 120.00160 * 182.79909 * 17 16 15 20 20 C 1.39907 * 125.69133 * 172.83548 * 19 17 16 21 21 C 1.38576 * 107.59019 * 180.02562 * 20 19 17 22 22 N 1.34116 * 132.34049 * 180.02562 * 21 20 19 23 23 C 1.31129 * 120.84162 * 179.97438 * 22 21 20 24 24 C 1.40344 * 120.29818 * 359.97438 * 23 22 21 25 25 C 1.35447 * 119.46519 * 359.97438 * 24 23 22 26 26 N 1.36680 * 119.14244 * 0.02562 * 25 24 23 27 27 N 1.32369 * 125.69586 * 352.53379 * 19 17 16 28 28 C 1.47803 * 120.49435 * 312.53206 * 16 15 14 29 29 C 1.45506 * 126.39883 * 180.02562 * 9 7 2 30 30 H 1.08994 * 109.57227 * 93.36780 * 29 9 7 31 31 H 0.96998 * 120.00412 * 359.97438 * 1 2 3 32 32 H 1.08997 * 109.91567 * 55.64779 * 10 9 7 33 33 H 1.09002 * 110.08368 * 294.44489 * 10 9 7 34 34 H 1.08999 * 110.96093 * 219.42364 * 11 10 9 35 35 H 1.09011 * 110.99057 * 95.70060 * 11 10 9 36 36 H 1.08997 * 109.89261 * 65.10681 * 14 12 11 37 37 H 1.09007 * 109.95203 * 304.03308 * 14 12 11 38 38 H 1.09000 * 109.22563 * 291.48830 * 15 14 12 39 39 H 1.08997 * 109.19762 * 172.09705 * 15 14 12 40 40 H 1.07999 * 126.19986 * 0.02687 * 20 19 17 41 41 H 1.08006 * 119.84763 * 180.02562 * 23 22 21 42 42 H 1.07999 * 120.26432 * 180.02562 * 24 23 22 43 43 H 1.08001 * 120.43042 * 180.02562 * 25 24 23 44 44 H 1.09003 * 110.06111 * 170.19963 * 28 16 15 45 45 H 1.09000 * 110.06862 * 291.76297 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3465 -0.0006 5 1 1.8912 2.3965 -1.2125 6 1 1.8914 2.3965 1.2124 7 6 2.0103 -1.2021 -0.0005 8 1 3.0904 -1.2020 -0.0001 9 7 1.3257 -2.3880 -0.0005 10 6 -0.1466 -2.5532 -0.0006 11 6 -0.4340 -4.0738 -0.1300 12 6 0.8686 -4.5875 -0.7639 13 1 0.8861 -4.3941 -1.8364 14 6 1.1979 -6.0412 -0.4668 15 6 2.5778 -6.3325 -1.0825 16 7 3.5606 -5.3356 -0.6473 17 6 4.7638 -5.7370 -0.1916 18 8 5.0498 -6.9184 -0.1903 19 6 5.7359 -4.7403 0.3066 20 6 6.9531 -5.0295 0.9330 21 6 7.5609 -3.8236 1.2442 22 7 8.7241 -3.5260 1.8417 23 6 9.0856 -2.2791 2.0258 24 6 8.2564 -1.2309 1.5976 25 6 7.0793 -1.5175 0.9918 26 7 6.7246 -2.8251 0.8113 27 7 5.6024 -3.4256 0.2295 28 6 3.2397 -3.8937 -0.6989 29 6 1.9084 -3.7213 -0.0005 30 1 1.9993 -4.0801 1.0247 31 1 -0.4850 0.8400 0.0004 32 1 -0.5801 -2.0200 -0.8467 33 1 -0.5659 -2.1739 0.9314 34 1 -1.2851 -4.2553 -0.7864 35 1 -0.5958 -4.5254 0.8489 36 1 0.4468 -6.6909 -0.9159 37 1 1.2310 -6.2024 0.6108 38 1 2.4985 -6.3077 -2.1693 39 1 2.9083 -7.3227 -0.7691 40 1 7.3474 -6.0140 1.1368 41 1 10.0262 -2.0577 2.5084 42 1 8.5549 -0.2041 1.7491 43 1 6.4294 -0.7231 0.6558 44 1 4.0092 -3.3206 -0.1815 45 1 3.1604 -3.5651 -1.7351 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042284097.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:48 Heat of formation + Delta-G solvation = 140.725732 kcal Electronic energy + Delta-G solvation = -30429.073301 eV Core-core repulsion = 26450.556034 eV Total energy + Delta-G solvation = -3978.517268 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.43919 -40.20244 -38.48155 -37.75607 -35.26421 -34.16846 -33.16370 -31.78018 -30.92399 -29.33770 -29.25850 -28.47103 -25.81009 -24.60945 -24.30362 -23.35109 -22.64590 -21.51084 -20.13518 -19.81396 -19.14397 -18.18991 -17.91372 -16.73566 -16.64951 -16.24734 -15.76325 -15.40924 -15.06164 -14.82273 -14.67359 -14.31564 -13.99922 -13.79668 -13.57998 -13.30154 -13.18093 -13.12662 -12.73521 -12.56433 -12.09358 -11.94488 -11.68388 -11.38621 -11.33177 -11.18310 -10.95414 -10.82061 -10.70742 -10.30353 -10.17751 -10.10469 -9.90641 -9.79581 -9.69792 -9.65502 -9.15867 -8.67803 -8.48537 -8.08544 -6.88935 -5.76303 -3.09538 0.32621 0.59595 1.77775 1.80182 2.98871 3.18603 3.32022 3.33209 3.39966 3.40164 3.68309 3.89204 4.24350 4.41608 4.56186 4.70701 4.97311 5.02496 5.14349 5.19819 5.21140 5.33935 5.39675 5.50849 5.59729 5.67732 5.76358 5.79888 5.82669 5.91397 6.03876 6.12353 6.14541 6.15434 6.18820 6.24003 6.43451 6.56240 6.61219 6.64801 6.88605 7.04450 7.17665 7.41007 7.48099 7.55127 7.58333 7.77591 8.15272 8.20109 9.14452 9.77536 10.45875 11.36298 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.008572 B = 0.005274 C = 0.003351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3265.638140 B = 5307.702674 C = 8352.599861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.008 4.008 3 Si 0.909 3.091 4 H -0.282 1.282 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.222 4.222 8 H 0.079 0.921 9 N -0.591 5.591 10 C 0.178 3.822 11 C -0.138 4.138 12 C -0.113 4.113 13 H 0.077 0.923 14 C -0.119 4.119 15 C 0.113 3.887 16 N -0.587 5.587 17 C 0.595 3.405 18 O -0.533 6.533 19 C 0.077 3.923 20 C -0.204 4.204 21 C 0.250 3.750 22 N -0.462 5.462 23 C 0.180 3.820 24 C -0.227 4.227 25 C 0.169 3.831 26 N -0.308 5.308 27 N -0.260 5.260 28 C 0.079 3.921 29 C 0.158 3.842 30 H 0.022 0.978 31 H 0.251 0.749 32 H 0.055 0.945 33 H 0.037 0.963 34 H 0.059 0.941 35 H 0.056 0.944 36 H 0.075 0.925 37 H 0.067 0.933 38 H 0.067 0.933 39 H 0.090 0.910 40 H 0.171 0.829 41 H 0.180 0.820 42 H 0.169 0.831 43 H 0.184 0.816 44 H 0.137 0.863 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.407 -5.469 1.236 13.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.205 4.205 3 Si 0.740 3.260 4 H -0.207 1.207 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.351 4.351 8 H 0.097 0.903 9 N -0.316 5.316 10 C 0.053 3.947 11 C -0.177 4.177 12 C -0.133 4.133 13 H 0.096 0.904 14 C -0.158 4.158 15 C -0.009 4.009 16 N -0.318 5.318 17 C 0.379 3.621 18 O -0.409 6.409 19 C -0.082 4.082 20 C -0.235 4.235 21 C 0.024 3.976 22 N -0.173 5.173 23 C -0.006 4.006 24 C -0.251 4.251 25 C 0.035 3.965 26 N -0.079 5.079 27 N -0.088 5.088 28 C -0.044 4.044 29 C 0.049 3.951 30 H 0.039 0.961 31 H 0.062 0.938 32 H 0.074 0.926 33 H 0.055 0.945 34 H 0.078 0.922 35 H 0.074 0.926 36 H 0.093 0.907 37 H 0.086 0.914 38 H 0.085 0.915 39 H 0.108 0.892 40 H 0.188 0.812 41 H 0.197 0.803 42 H 0.186 0.814 43 H 0.202 0.798 44 H 0.153 0.847 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 12.045 -5.868 0.986 13.435 hybrid contribution 0.299 1.334 0.046 1.368 sum 12.344 -4.534 1.032 13.191 Atomic orbital electron populations 1.69951 1.04834 1.24863 1.57124 1.24787 0.95669 0.97528 1.02478 0.86101 0.78493 0.84139 0.77287 1.20727 1.21771 1.21832 1.19048 0.90343 0.82220 1.43452 0.90312 1.44163 1.01671 0.99148 1.86619 1.21531 0.83618 0.88546 1.00963 1.22732 0.96041 0.99584 0.99306 1.22288 0.97337 0.93554 1.00149 0.90428 1.21817 0.95309 0.97318 1.01328 1.21657 0.88194 0.92156 0.98900 1.48188 1.13306 1.08916 1.61417 1.17042 0.81013 0.86233 0.77778 1.90769 1.77305 1.16169 1.56627 1.22143 0.95759 0.91470 0.98782 1.20860 0.95244 0.96900 1.10510 1.20560 0.88804 0.89783 0.98502 1.68237 1.12382 1.21948 1.14724 1.23419 0.98713 0.86810 0.91638 1.21860 0.95124 1.03031 1.05134 1.22281 0.96292 0.84262 0.93659 1.47641 1.15777 1.06256 1.38234 1.78228 1.01435 1.06808 1.22343 1.22822 1.01074 0.77973 1.02551 1.20850 0.91017 0.87637 0.95557 0.96088 0.93809 0.92631 0.94459 0.92203 0.92566 0.90673 0.91422 0.91498 0.89192 0.81170 0.80279 0.81400 0.79849 0.84688 0.90956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.27 10.44 55.49 0.58 -25.69 16 2 C -0.01 -0.23 5.49 -17.43 -0.10 -0.32 16 3 Si 0.91 21.08 29.55 -169.99 -5.02 16.05 16 4 H -0.28 -6.10 7.11 56.52 0.40 -5.69 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 7 C -0.22 -5.88 9.87 -15.06 -0.15 -6.03 16 8 H 0.08 2.01 7.41 -52.48 -0.39 1.62 16 9 N -0.59 -14.54 3.35 -163.17 -0.55 -15.08 16 10 C 0.18 4.21 5.45 -1.91 -0.01 4.20 16 11 C -0.14 -2.54 6.54 -25.15 -0.16 -2.70 16 12 C -0.11 -1.97 2.61 -89.52 -0.23 -2.21 16 13 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 14 C -0.12 -1.69 5.72 -26.79 -0.15 -1.84 16 15 C 0.11 1.64 6.32 -3.53 -0.02 1.61 16 16 N -0.59 -9.94 3.02 -174.10 -0.53 -10.46 16 17 C 0.59 10.51 7.68 -12.32 -0.09 10.41 16 18 O -0.53 -10.03 16.24 5.32 0.09 -9.95 16 19 C 0.08 1.32 6.82 -83.06 -0.57 0.76 16 20 C -0.20 -3.20 10.66 -38.83 -0.41 -3.61 16 21 C 0.25 3.70 7.90 -155.42 -1.23 2.47 16 22 N -0.46 -5.76 10.48 -12.22 -0.13 -5.89 16 23 C 0.18 1.48 11.27 -17.06 -0.19 1.29 16 24 C -0.23 -1.72 10.05 -39.79 -0.40 -2.12 16 25 C 0.17 1.87 11.30 -16.39 -0.19 1.69 16 26 N -0.31 -4.58 3.90 -12.20 -0.05 -4.63 16 27 N -0.26 -4.49 8.89 33.23 0.30 -4.19 16 28 C 0.08 1.49 5.46 -4.17 -0.02 1.47 16 29 C 0.16 3.25 2.74 -68.05 -0.19 3.06 16 30 H 0.02 0.48 7.93 -51.93 -0.41 0.07 16 31 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 32 H 0.06 1.45 7.21 -51.93 -0.37 1.08 16 33 H 0.04 0.97 7.77 -51.93 -0.40 0.57 16 34 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 35 H 0.06 0.98 8.12 -51.92 -0.42 0.56 16 36 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 37 H 0.07 1.00 7.99 -51.92 -0.41 0.58 16 38 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.09 1.27 6.98 -51.93 -0.36 0.91 16 40 H 0.17 2.43 8.06 -52.49 -0.42 2.01 16 41 H 0.18 0.69 8.06 -52.48 -0.42 0.27 16 42 H 0.17 0.62 8.06 -52.49 -0.42 0.19 16 43 H 0.18 1.78 8.06 -52.49 -0.42 1.35 16 44 H 0.14 2.68 3.46 -127.69 -0.44 2.23 16 45 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 LS Contribution 361.20 15.07 5.44 5.44 Total: -1.00 -33.22 361.20 -10.14 -43.36 By element: Atomic # 1 Polarization: 9.08 SS G_CDS: -6.16 Total: 2.92 kcal Atomic # 6 Polarization: 12.23 SS G_CDS: -4.12 Total: 8.11 kcal Atomic # 7 Polarization: -65.57 SS G_CDS: -0.37 Total: -65.94 kcal Atomic # 8 Polarization: -10.03 SS G_CDS: 0.09 Total: -9.95 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -33.22 -10.14 -43.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042284097.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 184.087 kcal (2) G-P(sol) polarization free energy of solvation -33.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 150.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.361 kcal (6) G-S(sol) free energy of system = (1) + (5) 140.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds