Wall clock time and date at job start Sat Apr 11 2020 06:19:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86802 * 120.00244 * 2 1 4 4 H 1.48499 * 109.46672 * 274.98766 * 3 2 1 5 5 H 1.48500 * 109.47084 * 34.98294 * 3 2 1 6 6 H 1.48494 * 109.46918 * 154.98886 * 3 2 1 7 7 C 1.38813 * 119.99681 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99920 * 186.39397 * 7 2 1 9 9 N 1.36933 * 120.00276 * 6.39370 * 7 2 1 10 10 C 1.47128 * 125.76509 * 353.31505 * 9 7 2 11 11 C 1.54561 * 107.25369 * 182.59997 * 10 9 7 12 12 C 1.54422 * 102.45303 * 21.66508 * 11 10 9 13 13 H 1.09006 * 109.99877 * 80.25913 * 12 11 10 14 14 C 1.48212 * 125.76906 * 173.31635 * 9 7 2 15 15 H 1.09004 * 111.52425 * 32.97732 * 14 9 7 16 16 C 1.53010 * 107.11267 * 270.86003 * 14 9 7 17 17 C 1.52733 * 110.80362 * 191.93543 * 16 14 9 18 18 C 1.53467 * 108.61754 * 63.66279 * 17 16 14 19 19 N 1.45120 * 111.60847 * 203.42762 * 12 11 10 20 20 C 1.34775 * 119.57804 * 248.63423 * 19 12 11 21 21 O 1.21557 * 120.00302 * 174.36314 * 20 19 12 22 22 C 1.47767 * 119.99898 * 354.36539 * 20 19 12 23 23 C 1.39639 * 121.07567 * 34.93570 * 22 20 19 24 24 C 1.38334 * 119.37981 * 179.77305 * 23 22 20 25 25 N 1.31730 * 121.54323 * 0.52127 * 24 23 22 26 26 C 1.32112 * 121.94935 * 359.73398 * 25 24 23 27 27 N 1.37946 * 133.81371 * 180.02562 * 26 25 24 28 28 H 0.97005 * 126.34914 * 359.97438 * 27 26 25 29 29 C 1.35985 * 107.28853 * 179.97438 * 27 26 25 30 30 N 1.30280 * 110.05712 * 0.02562 * 29 27 26 31 31 C 1.34658 * 109.66770 * 359.97438 * 30 29 27 32 32 H 0.96998 * 119.99770 * 0.02562 * 1 2 3 33 33 H 1.09002 * 109.88294 * 302.00877 * 10 9 7 34 34 H 1.08998 * 109.88325 * 63.18799 * 10 9 7 35 35 H 1.08994 * 110.81160 * 139.90556 * 11 10 9 36 36 H 1.09004 * 110.81235 * 263.23365 * 11 10 9 37 37 H 1.09007 * 109.20901 * 71.59538 * 16 14 9 38 38 H 1.09001 * 109.17743 * 312.25396 * 16 14 9 39 39 H 1.09000 * 109.64250 * 183.45069 * 17 16 14 40 40 H 1.09000 * 109.64218 * 303.86817 * 17 16 14 41 41 H 1.09003 * 109.83193 * 61.54763 * 18 17 16 42 42 H 1.08999 * 109.83030 * 182.49874 * 18 17 16 43 43 H 1.08005 * 120.30857 * 0.02562 * 23 22 20 44 44 H 1.07997 * 119.23351 * 180.23235 * 24 23 22 45 45 H 1.08000 * 124.96796 * 180.02562 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.3923 2.1072 -1.3948 5 1 1.5044 2.6200 0.8027 6 1 3.5965 1.4119 0.5919 7 6 2.0102 -1.2022 0.0005 8 1 3.0851 -1.2051 0.1047 9 7 1.3319 -2.3844 -0.1310 10 6 -0.1311 -2.5399 -0.1418 11 6 -0.4306 -4.0526 -0.2454 12 6 0.8796 -4.6875 0.2693 13 1 0.8970 -4.6749 1.3591 14 6 1.9474 -3.7237 -0.2865 15 1 2.8899 -3.7962 0.2563 16 6 2.1475 -3.9559 -1.7856 17 6 2.5006 -5.4151 -2.0661 18 6 1.3140 -6.2950 -1.6502 19 7 1.0497 -6.0400 -0.2287 20 6 0.9672 -7.0788 0.6259 21 8 1.0059 -8.2180 0.2035 22 6 0.8298 -6.8331 2.0765 23 6 0.0975 -5.7456 2.5571 24 6 -0.0123 -5.5514 3.9224 25 7 0.5669 -6.3636 4.7827 26 6 1.2769 -7.4065 4.3907 27 7 1.9720 -8.3939 5.0577 28 1 2.0577 -8.4871 6.0194 29 6 2.5145 -9.2121 4.1168 30 7 2.1994 -8.7925 2.9243 31 6 1.4387 -7.6854 3.0198 32 1 -0.4850 0.8400 -0.0004 33 1 -0.5531 -2.1407 0.7806 34 1 -0.5529 -2.0187 -1.0011 35 1 -1.2704 -4.3258 0.3936 36 1 -0.6234 -4.3394 -1.2792 37 1 2.9548 -3.3165 -2.1430 38 1 1.2282 -3.7016 -2.3132 39 1 2.6987 -5.5462 -3.1299 40 1 3.3837 -5.6954 -1.4918 41 1 0.4352 -6.0334 -2.2395 42 1 1.5620 -7.3457 -1.8009 43 1 -0.3821 -5.0647 1.8694 44 1 -0.5824 -4.7117 4.2915 45 1 3.1182 -10.0825 4.3273 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049501156.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:55 Heat of formation + Delta-G solvation = 116.116680 kcal Electronic energy + Delta-G solvation = -30769.559956 eV Core-core repulsion = 26789.975560 eV Total energy + Delta-G solvation = -3979.584396 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.56786 -40.55205 -38.36661 -37.96815 -34.98327 -34.05775 -32.95340 -32.10996 -31.15944 -29.90627 -29.07523 -28.22862 -25.63044 -24.53703 -23.90009 -23.34296 -22.41221 -21.61362 -20.66964 -20.05896 -19.04431 -18.14529 -17.78889 -17.10522 -16.72716 -15.96659 -15.77554 -15.54186 -15.09598 -14.77536 -14.55679 -14.39216 -14.06868 -13.70863 -13.65508 -13.34536 -12.94447 -12.81268 -12.61593 -12.44656 -11.99707 -11.91947 -11.43630 -11.23340 -11.05763 -11.01058 -10.92592 -10.76818 -10.67257 -10.48910 -10.18139 -10.10395 -9.92714 -9.77632 -9.65391 -9.21181 -8.80816 -8.67716 -8.64824 -8.27281 -6.91072 -5.78367 -3.11178 0.35647 1.03603 2.34053 2.59796 2.89556 3.11487 3.37103 3.43366 3.44491 3.75057 3.90958 4.21426 4.41262 4.49835 4.63021 4.83984 5.00729 5.07855 5.19436 5.21927 5.31374 5.39942 5.45529 5.50699 5.56533 5.62595 5.67556 5.76845 5.85058 5.90276 6.09147 6.13159 6.18917 6.21784 6.32287 6.37729 6.43730 6.50070 6.75533 6.86632 6.88256 7.01691 7.45514 7.54131 7.55042 7.60757 7.69395 7.75534 8.16972 8.31136 9.14835 9.74309 10.40143 11.33450 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013416 B = 0.003833 C = 0.003316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2086.611900 B = 7303.105464 C = 8441.904521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.003 4.003 3 Si 0.908 3.092 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.228 4.228 8 H 0.077 0.923 9 N -0.597 5.597 10 C 0.180 3.820 11 C -0.158 4.158 12 C 0.091 3.909 13 H 0.119 0.881 14 C 0.156 3.844 15 H 0.060 0.940 16 C -0.130 4.130 17 C -0.133 4.133 18 C 0.115 3.885 19 N -0.583 5.583 20 C 0.558 3.442 21 O -0.521 6.521 22 C -0.030 4.030 23 C -0.160 4.160 24 C 0.139 3.861 25 N -0.471 5.471 26 C 0.232 3.768 27 N -0.590 5.590 28 H 0.429 0.571 29 C 0.273 3.727 30 N -0.471 5.471 31 C 0.049 3.951 32 H 0.253 0.747 33 H 0.049 0.951 34 H 0.047 0.953 35 H 0.064 0.936 36 H 0.067 0.933 37 H 0.060 0.940 38 H 0.063 0.937 39 H 0.069 0.931 40 H 0.062 0.938 41 H 0.068 0.932 42 H 0.090 0.910 43 H 0.172 0.828 44 H 0.177 0.823 45 H 0.226 0.774 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.374 -15.334 6.879 16.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.200 4.200 3 Si 0.739 3.261 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.356 4.356 8 H 0.095 0.905 9 N -0.322 5.322 10 C 0.055 3.945 11 C -0.197 4.197 12 C -0.013 4.013 13 H 0.136 0.864 14 C 0.048 3.952 15 H 0.078 0.922 16 C -0.170 4.170 17 C -0.172 4.172 18 C -0.006 4.006 19 N -0.314 5.314 20 C 0.345 3.655 21 O -0.397 6.397 22 C -0.043 4.043 23 C -0.182 4.182 24 C -0.027 4.027 25 N -0.184 5.184 26 C -0.005 4.005 27 N -0.205 5.205 28 H 0.269 0.731 29 C -0.014 4.014 30 N -0.189 5.189 31 C -0.074 4.074 32 H 0.063 0.937 33 H 0.067 0.933 34 H 0.066 0.934 35 H 0.082 0.918 36 H 0.085 0.915 37 H 0.079 0.921 38 H 0.082 0.918 39 H 0.087 0.913 40 H 0.081 0.919 41 H 0.086 0.914 42 H 0.109 0.891 43 H 0.189 0.811 44 H 0.194 0.806 45 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 1.515 -15.929 6.724 17.357 hybrid contribution 0.403 1.225 0.354 1.337 sum 1.918 -14.704 7.078 16.432 Atomic orbital electron populations 1.69943 1.04853 1.25130 1.56654 1.24780 0.95663 0.97514 1.02011 0.86156 0.78742 0.83715 0.77505 1.21656 1.21770 1.20670 1.19022 0.91027 0.82275 1.43280 0.90472 1.44701 1.01315 1.00480 1.85726 1.21199 0.84537 0.87361 1.01439 1.23230 0.95699 0.99850 1.00914 1.22763 0.97545 0.80178 1.00803 0.86402 1.21354 0.94363 0.86009 0.93479 0.92230 1.22111 1.02000 0.93715 0.99144 1.21932 0.97670 0.96696 1.00891 1.21700 0.98081 1.00882 0.79977 1.47486 1.69564 1.06071 1.08312 1.17990 0.77354 0.85002 0.85123 1.90777 1.49474 1.21380 1.78098 1.19566 0.97583 0.93862 0.93282 1.22895 1.00277 0.96865 0.98170 1.22633 0.95218 0.96330 0.88512 1.66225 1.08814 1.02691 1.40662 1.18958 0.98850 0.92838 0.89818 1.42866 1.43959 1.22982 1.10663 0.73119 1.25637 0.97055 0.96255 0.82458 1.70262 1.15352 1.10877 1.22454 1.19142 1.00842 0.95742 0.91674 0.93702 0.93305 0.93447 0.91777 0.91472 0.92091 0.91789 0.91272 0.91938 0.91355 0.89130 0.81076 0.80621 0.75796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.39 10.38 55.49 0.58 -24.82 16 2 C 0.00 -0.08 5.48 -17.43 -0.10 -0.18 16 3 Si 0.91 21.29 29.56 -169.99 -5.02 16.26 16 4 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.23 -5.94 10.28 -15.06 -0.15 -6.10 16 8 H 0.08 1.98 7.84 -52.49 -0.41 1.57 16 9 N -0.60 -13.84 2.91 -162.19 -0.47 -14.31 16 10 C 0.18 3.92 5.19 -2.88 -0.01 3.90 16 11 C -0.16 -2.65 5.69 -25.17 -0.14 -2.79 16 12 C 0.09 1.52 2.22 -67.29 -0.15 1.37 16 13 H 0.12 1.94 3.61 -52.64 -0.19 1.75 16 14 C 0.16 3.00 3.60 -66.35 -0.24 2.76 16 15 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 16 C -0.13 -2.26 5.11 -26.86 -0.14 -2.39 16 17 C -0.13 -1.91 6.10 -26.63 -0.16 -2.08 16 18 C 0.12 1.69 6.15 -3.63 -0.02 1.67 16 19 N -0.58 -9.37 2.73 -166.13 -0.45 -9.82 16 20 C 0.56 9.73 7.42 -12.37 -0.09 9.64 16 21 O -0.52 -10.38 16.16 5.32 0.09 -10.30 16 22 C -0.03 -0.48 5.52 -104.45 -0.58 -1.06 16 23 C -0.16 -2.20 7.51 -39.02 -0.29 -2.50 16 24 C 0.14 1.74 11.14 -17.56 -0.20 1.55 16 25 N -0.47 -6.40 10.35 -12.30 -0.13 -6.53 16 26 C 0.23 3.15 8.46 -155.64 -1.32 1.83 16 27 N -0.59 -5.40 6.23 -13.21 -0.08 -5.48 16 28 H 0.43 2.30 8.96 -40.82 -0.37 1.93 16 29 C 0.27 2.52 12.97 -89.69 -1.16 1.36 16 30 N -0.47 -6.99 11.12 -11.88 -0.13 -7.12 16 31 C 0.05 0.77 6.87 -84.62 -0.58 0.19 16 32 H 0.25 6.86 8.31 -40.82 -0.34 6.52 16 33 H 0.05 1.16 7.51 -51.93 -0.39 0.77 16 34 H 0.05 1.17 7.43 -51.93 -0.39 0.79 16 35 H 0.06 0.94 6.99 -51.93 -0.36 0.57 16 36 H 0.07 1.11 6.85 -51.93 -0.36 0.75 16 37 H 0.06 1.12 8.14 -51.92 -0.42 0.69 16 38 H 0.06 1.18 7.12 -51.93 -0.37 0.81 16 39 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.07 0.94 7.55 -51.93 -0.39 0.55 16 42 H 0.09 1.35 6.99 -51.93 -0.36 0.98 16 43 H 0.17 2.28 3.91 -52.48 -0.21 2.07 16 44 H 0.18 1.66 8.06 -52.49 -0.42 1.24 16 45 H 0.23 0.79 8.06 -52.49 -0.42 0.37 16 LS Contribution 352.20 15.07 5.31 5.31 Total: -1.00 -34.43 352.20 -11.12 -45.56 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: -5.46 Total: 4.06 kcal Atomic # 6 Polarization: 12.52 SS G_CDS: -5.34 Total: 7.18 kcal Atomic # 7 Polarization: -67.39 SS G_CDS: -0.69 Total: -68.08 kcal Atomic # 8 Polarization: -10.38 SS G_CDS: 0.09 Total: -10.30 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -34.43 -11.12 -45.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049501156.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.672 kcal (2) G-P(sol) polarization free energy of solvation -34.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.555 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds