Wall clock time and date at job start Sat Apr 11 2020 06:19:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 120.00062 * 2 1 4 4 H 1.48503 * 109.46972 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47381 * 300.00081 * 3 2 1 6 6 H 1.48504 * 109.47170 * 60.00012 * 3 2 1 7 7 C 1.38814 * 120.00001 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99921 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99559 * 0.02562 * 7 2 1 10 10 C 1.48382 * 126.56538 * 359.97275 * 9 7 2 11 11 C 1.57549 * 107.17492 * 174.40203 * 10 9 7 12 12 C 1.53428 * 100.72995 * 337.63096 * 11 10 9 13 13 H 1.08997 * 111.14908 * 281.50369 * 12 11 10 14 14 C 1.45030 * 126.55577 * 180.02562 * 9 7 2 15 15 H 1.08999 * 108.25700 * 96.07716 * 14 9 7 16 16 C 1.51076 * 118.60942 * 330.84639 * 14 9 7 17 17 C 1.53875 * 107.34207 * 176.49814 * 16 14 9 18 18 C 1.52722 * 111.52278 * 56.93191 * 17 16 14 19 19 N 1.45726 * 116.37180 * 153.04607 * 12 11 10 20 20 C 1.34775 * 122.22918 * 9.04621 * 19 12 11 21 21 O 1.21562 * 119.99646 * 354.62806 * 20 19 12 22 22 C 1.47758 * 119.99911 * 174.62771 * 20 19 12 23 23 C 1.39640 * 121.07567 * 315.51691 * 22 20 19 24 24 C 1.38338 * 119.37379 * 179.69438 * 23 22 20 25 25 N 1.31729 * 121.54820 * 0.62100 * 24 23 22 26 26 C 1.32111 * 121.94882 * 359.67365 * 25 24 23 27 27 N 1.37945 * 133.81068 * 180.02562 * 26 25 24 28 28 H 0.96999 * 126.35944 * 359.95902 * 27 26 25 29 29 C 1.35988 * 107.28574 * 179.97438 * 27 26 25 30 30 N 1.30288 * 110.05733 * 359.97438 * 29 27 26 31 31 C 1.34656 * 109.66571 * 0.02562 * 30 29 27 32 32 H 0.97007 * 119.99613 * 0.02562 * 1 2 3 33 33 H 1.08992 * 109.96009 * 293.87903 * 10 9 7 34 34 H 1.09000 * 109.95747 * 55.08385 * 10 9 7 35 35 H 1.09001 * 111.86597 * 219.67310 * 11 10 9 36 36 H 1.08999 * 110.98469 * 95.22380 * 11 10 9 37 37 H 1.08992 * 109.88556 * 57.04016 * 16 14 9 38 38 H 1.09000 * 109.94134 * 295.98660 * 16 14 9 39 39 H 1.08998 * 109.07010 * 296.40228 * 17 16 14 40 40 H 1.09001 * 109.01525 * 177.41649 * 17 16 14 41 41 H 1.09003 * 109.15738 * 191.05805 * 18 17 16 42 42 H 1.08997 * 109.11876 * 71.83795 * 18 17 16 43 43 H 1.07997 * 120.31238 * 359.97438 * 23 22 20 44 44 H 1.07996 * 119.22904 * 180.29798 * 24 23 22 45 45 H 1.08002 * 124.97160 * 179.97438 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3463 0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8915 2.3965 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3255 -2.3880 -0.0016 10 6 -0.1486 -2.5576 -0.0017 11 6 -0.4396 -4.0988 -0.1499 12 6 0.8712 -4.5770 -0.7881 13 1 0.8952 -4.3502 -1.8540 14 6 1.9024 -3.7186 -0.0017 15 1 1.9369 -4.0760 1.0274 16 6 3.2534 -3.9213 -0.6469 17 6 3.6528 -5.3904 -0.4231 18 6 2.6020 -6.3479 -0.9810 19 7 1.2444 -5.9634 -0.5390 20 6 0.4080 -6.8373 0.0553 21 8 -0.6606 -6.4554 0.4911 22 6 0.7901 -8.2594 0.1772 23 6 1.3562 -8.9483 -0.8974 24 6 1.7066 -10.2776 -0.7424 25 7 1.5077 -10.9148 0.3933 26 6 0.9710 -10.3203 1.4439 27 7 0.6586 -10.7373 2.7211 28 1 0.7978 -11.6250 3.0864 29 6 0.1187 -9.6729 3.3730 30 7 0.0809 -8.6374 2.5831 31 6 0.5897 -8.9661 1.3805 32 1 -0.4850 0.8401 -0.0004 33 1 -0.5656 -2.1889 0.9354 34 1 -0.5852 -2.0167 -0.8413 35 1 -1.2870 -4.2905 -0.8082 36 1 -0.5914 -4.5629 0.8246 37 1 3.9880 -3.2628 -0.1836 38 1 3.1903 -3.7130 -1.7149 39 1 3.7662 -5.5697 0.6461 40 1 4.6052 -5.5789 -0.9186 41 1 2.8186 -7.3583 -0.6340 42 1 2.6425 -6.3273 -2.0700 43 1 1.5233 -8.4468 -1.8391 44 1 2.1487 -10.8068 -1.5735 45 1 -0.2280 -9.6843 4.3958 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049501158.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:58 Heat of formation + Delta-G solvation = 106.664145 kcal Electronic energy + Delta-G solvation = -30360.705261 eV Core-core repulsion = 26380.710972 eV Total energy + Delta-G solvation = -3979.994289 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.66359 -40.33431 -38.58267 -37.55180 -35.38806 -33.90877 -32.58603 -32.30461 -31.35343 -30.02142 -28.83174 -28.11066 -25.63089 -24.44804 -23.91999 -23.44804 -22.18461 -21.42658 -20.93591 -19.94790 -19.42081 -18.12041 -17.88962 -16.94651 -16.38655 -16.03185 -15.65286 -15.45639 -15.17581 -14.91214 -14.46414 -14.31668 -14.19121 -13.98753 -13.59532 -13.30412 -13.07698 -12.93693 -12.62125 -12.36036 -12.20452 -11.82124 -11.59130 -11.36299 -11.16241 -11.05755 -10.83236 -10.66862 -10.52645 -10.41912 -10.04180 -9.95848 -9.77081 -9.63677 -9.56053 -9.15108 -8.89674 -8.77175 -8.52671 -8.19557 -6.77125 -5.65144 -2.99199 0.25867 0.87793 2.22128 2.52215 2.85913 3.08924 3.43163 3.48098 3.50923 3.60124 3.80861 4.11050 4.31686 4.50283 4.53644 4.70510 4.84069 4.89019 5.06448 5.12810 5.31334 5.41528 5.42578 5.48390 5.56753 5.65296 5.67273 5.77930 5.81784 5.89837 6.04364 6.12901 6.23076 6.27323 6.34016 6.45362 6.60460 6.76566 6.77701 6.82318 6.97870 7.26446 7.47299 7.52615 7.63650 7.67812 7.74604 7.89986 8.30222 8.41048 9.24508 9.88266 10.57130 11.46848 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.021157 B = 0.003009 C = 0.002854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.106988 B = 9301.908009 C = 9806.740030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.008 4.008 3 Si 0.910 3.090 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.224 4.224 8 H 0.079 0.921 9 N -0.594 5.594 10 C 0.174 3.826 11 C -0.137 4.137 12 C 0.118 3.882 13 H 0.081 0.919 14 C 0.159 3.841 15 H 0.019 0.981 16 C -0.115 4.115 17 C -0.130 4.130 18 C 0.104 3.896 19 N -0.593 5.593 20 C 0.561 3.439 21 O -0.501 6.501 22 C -0.019 4.019 23 C -0.156 4.156 24 C 0.134 3.866 25 N -0.474 5.474 26 C 0.234 3.766 27 N -0.590 5.590 28 H 0.429 0.571 29 C 0.278 3.722 30 N -0.469 5.469 31 C 0.047 3.953 32 H 0.251 0.749 33 H 0.039 0.961 34 H 0.056 0.944 35 H 0.061 0.939 36 H 0.088 0.912 37 H 0.067 0.933 38 H 0.065 0.935 39 H 0.062 0.938 40 H 0.073 0.927 41 H 0.080 0.920 42 H 0.070 0.930 43 H 0.152 0.848 44 H 0.173 0.827 45 H 0.228 0.772 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.160 -24.584 0.192 25.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.205 4.205 3 Si 0.741 3.259 4 H -0.206 1.206 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.352 4.352 8 H 0.097 0.903 9 N -0.318 5.318 10 C 0.050 3.950 11 C -0.175 4.175 12 C 0.014 3.986 13 H 0.099 0.901 14 C 0.050 3.950 15 H 0.037 0.963 16 C -0.154 4.154 17 C -0.168 4.168 18 C -0.018 4.018 19 N -0.326 5.326 20 C 0.347 3.653 21 O -0.375 6.375 22 C -0.033 4.033 23 C -0.179 4.179 24 C -0.032 4.032 25 N -0.187 5.187 26 C -0.003 4.003 27 N -0.205 5.205 28 H 0.269 0.731 29 C -0.010 4.010 30 N -0.187 5.187 31 C -0.076 4.076 32 H 0.062 0.938 33 H 0.057 0.943 34 H 0.074 0.926 35 H 0.079 0.921 36 H 0.107 0.893 37 H 0.085 0.915 38 H 0.083 0.917 39 H 0.081 0.919 40 H 0.091 0.909 41 H 0.099 0.901 42 H 0.088 0.912 43 H 0.170 0.830 44 H 0.190 0.810 45 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges 4.406 -24.128 0.761 24.539 hybrid contribution 0.656 0.444 -0.019 0.792 sum 5.062 -23.684 0.743 24.230 Atomic orbital electron populations 1.69963 1.04857 1.24874 1.56964 1.24807 0.95672 0.97594 1.02396 0.86077 0.78668 0.84004 0.77200 1.20568 1.21823 1.21829 1.19032 0.90337 0.82189 1.43670 0.90311 1.44088 1.01848 0.99353 1.86558 1.22087 0.83512 0.88423 1.01007 1.23418 0.94158 0.98084 1.01850 1.22484 0.98855 0.77964 0.99320 0.90086 1.20786 0.91350 0.87163 0.95742 0.96319 1.21429 0.98541 0.94101 1.01283 1.21907 0.97598 0.95779 1.01565 1.21928 0.81690 0.98871 0.99349 1.47906 1.14348 1.11253 1.59097 1.17890 0.84646 0.84197 0.78558 1.90825 1.23169 1.77502 1.46046 1.19775 0.96939 0.95000 0.91537 1.22240 1.00065 0.96151 0.99427 1.22494 0.96177 0.91304 0.93226 1.66197 1.14566 1.39429 0.98547 1.18946 1.01770 0.91737 0.87837 1.42911 1.53259 1.14836 1.09475 0.73074 1.25712 0.95017 0.80692 0.99533 1.70311 1.20036 1.27322 1.01045 1.19228 1.02409 0.92118 0.93842 0.93806 0.94252 0.92601 0.92075 0.89324 0.91460 0.91668 0.91941 0.90852 0.90136 0.91225 0.83040 0.81050 0.75620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.54 10.46 55.49 0.58 -26.96 16 2 C -0.01 -0.24 5.49 -17.43 -0.10 -0.33 16 3 Si 0.91 22.31 29.55 -169.99 -5.02 17.28 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 6 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 7 C -0.22 -6.25 9.92 -15.06 -0.15 -6.40 16 8 H 0.08 2.10 7.26 -52.49 -0.38 1.72 16 9 N -0.59 -15.47 3.35 -161.93 -0.54 -16.01 16 10 C 0.17 4.50 5.53 -0.52 0.00 4.50 16 11 C -0.14 -3.00 5.26 -24.03 -0.13 -3.12 16 12 C 0.12 2.28 3.27 -66.79 -0.22 2.06 16 13 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 14 C 0.16 3.39 2.59 -68.35 -0.18 3.22 16 15 H 0.02 0.46 8.08 -51.93 -0.42 0.04 16 16 C -0.11 -1.99 5.41 -27.24 -0.15 -2.13 16 17 C -0.13 -1.69 5.94 -26.42 -0.16 -1.85 16 18 C 0.10 1.25 5.14 -3.44 -0.02 1.24 16 19 N -0.59 -9.60 2.91 -165.11 -0.48 -10.08 16 20 C 0.56 9.77 7.35 -12.37 -0.09 9.68 16 21 O -0.50 -10.62 13.73 5.31 0.07 -10.54 16 22 C -0.02 -0.28 5.07 -104.45 -0.53 -0.81 16 23 C -0.16 -1.55 7.62 -39.02 -0.30 -1.85 16 24 C 0.13 1.16 11.14 -17.56 -0.20 0.97 16 25 N -0.47 -5.14 10.35 -12.30 -0.13 -5.27 16 26 C 0.23 2.75 8.46 -155.64 -1.32 1.43 16 27 N -0.59 -4.70 6.23 -13.21 -0.08 -4.78 16 28 H 0.43 1.78 8.96 -40.82 -0.37 1.41 16 29 C 0.28 2.43 12.97 -89.68 -1.16 1.27 16 30 N -0.47 -6.84 11.23 -11.88 -0.13 -6.97 16 31 C 0.05 0.68 6.93 -84.61 -0.59 0.10 16 32 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 33 H 0.04 1.12 7.81 -51.93 -0.41 0.72 16 34 H 0.06 1.56 7.19 -51.93 -0.37 1.18 16 35 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 36 H 0.09 2.09 6.03 -51.93 -0.31 1.78 16 37 H 0.07 1.22 7.66 -51.93 -0.40 0.82 16 38 H 0.06 1.11 8.12 -51.93 -0.42 0.69 16 39 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 40 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.08 0.82 5.16 -51.93 -0.27 0.55 16 42 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.15 1.14 7.10 -52.49 -0.37 0.77 16 44 H 0.17 0.80 8.06 -52.49 -0.42 0.37 16 45 H 0.23 0.78 8.06 -52.49 -0.42 0.35 16 LS Contribution 355.72 15.07 5.36 5.36 Total: -1.00 -37.98 355.72 -11.46 -49.44 By element: Atomic # 1 Polarization: 6.39 SS G_CDS: -5.81 Total: 0.58 kcal Atomic # 6 Polarization: 13.24 SS G_CDS: -5.27 Total: 7.96 kcal Atomic # 7 Polarization: -69.29 SS G_CDS: -0.79 Total: -70.08 kcal Atomic # 8 Polarization: -10.62 SS G_CDS: 0.07 Total: -10.54 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -37.98 -11.46 -49.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049501158.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.101 kcal (2) G-P(sol) polarization free energy of solvation -37.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.437 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds