Wall clock time and date at job start Sat Apr 11 2020 06:20:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86798 * 120.00348 * 2 1 4 4 H 1.48501 * 109.47123 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47178 * 300.00472 * 3 2 1 6 6 H 1.48505 * 109.46594 * 60.00227 * 3 2 1 7 7 C 1.38817 * 119.99501 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99552 * 180.02562 * 7 2 1 9 9 N 1.36934 * 119.99970 * 359.97438 * 7 2 1 10 10 C 1.48380 * 126.56511 * 359.97438 * 9 7 2 11 11 C 1.55465 * 106.97716 * 185.54366 * 10 9 7 12 12 C 1.53437 * 101.66948 * 22.60712 * 11 10 9 13 13 H 1.08988 * 111.75017 * 78.22255 * 12 11 10 14 14 C 1.45029 * 126.55929 * 180.02562 * 9 7 2 15 15 H 1.08994 * 108.26581 * 263.89396 * 14 9 7 16 16 C 1.51086 * 119.18486 * 28.77355 * 14 9 7 17 17 C 1.53869 * 107.34482 * 183.87189 * 16 14 9 18 18 C 1.53141 * 111.46993 * 302.93198 * 17 16 14 19 19 N 1.45732 * 116.37842 * 207.26410 * 12 11 10 20 20 C 1.34780 * 122.22546 * 350.08738 * 19 12 11 21 21 O 1.21560 * 120.00244 * 5.36952 * 20 19 12 22 22 C 1.47761 * 119.99484 * 185.36888 * 20 19 12 23 23 C 1.39643 * 121.07365 * 44.80101 * 22 20 19 24 24 C 1.38336 * 119.37597 * 180.02562 * 23 22 20 25 25 N 1.31731 * 121.54520 * 0.03680 * 24 23 22 26 26 C 1.32112 * 121.94941 * 359.97438 * 25 24 23 27 27 N 1.37939 * 133.80637 * 179.97438 * 26 25 24 28 28 H 0.96999 * 126.36003 * 359.97438 * 27 26 25 29 29 C 1.35988 * 107.28436 * 180.02562 * 27 26 25 30 30 N 1.30286 * 110.05562 * 359.79090 * 29 27 26 31 31 C 1.34648 * 109.66725 * 0.34691 * 30 29 27 32 32 H 0.97001 * 119.99476 * 359.97438 * 1 2 3 33 33 H 1.09002 * 109.96184 * 304.92784 * 10 9 7 34 34 H 1.08999 * 109.95687 * 66.12977 * 10 9 7 35 35 H 1.08998 * 110.99155 * 264.50884 * 11 10 9 36 36 H 1.09005 * 110.98898 * 140.69710 * 11 10 9 37 37 H 1.09002 * 109.88176 * 303.33731 * 16 14 9 38 38 H 1.09007 * 109.87990 * 64.34236 * 16 14 9 39 39 H 1.09001 * 109.06756 * 63.60525 * 17 16 14 40 40 H 1.08999 * 109.06836 * 182.61495 * 17 16 14 41 41 H 1.08998 * 109.32455 * 288.41339 * 18 17 16 42 42 H 1.08997 * 109.23835 * 169.08333 * 18 17 16 43 43 H 1.07998 * 120.31589 * 0.07438 * 23 22 20 44 44 H 1.08003 * 119.22929 * 180.02562 * 24 23 22 45 45 H 1.08005 * 124.96958 * 179.97438 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3462 0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8916 2.3963 1.2126 7 6 2.0102 -1.2023 -0.0005 8 1 3.0902 -1.2023 -0.0001 9 7 1.3254 -2.3881 -0.0005 10 6 -0.1486 -2.5576 0.0005 11 6 -0.4304 -4.0798 0.1437 12 6 0.8715 -4.5774 0.7852 13 1 0.9047 -4.3599 1.8527 14 6 1.9022 -3.7187 -0.0005 15 1 1.9371 -4.0759 -1.0297 16 6 3.2561 -3.9349 0.6344 17 6 3.6451 -5.4044 0.3963 18 6 2.5899 -6.3616 0.9581 19 7 1.2345 -5.9640 0.5216 20 6 0.3885 -6.8276 -0.0742 21 8 -0.6809 -6.4355 -0.4989 22 6 0.7609 -8.2509 -0.2111 23 6 1.3246 -8.9542 0.8555 24 6 1.6606 -10.2857 0.6885 25 7 1.4620 -10.9083 -0.4553 26 6 0.9331 -10.2980 -1.5008 27 7 0.6229 -10.6981 -2.7840 28 1 0.7589 -11.5821 -3.1594 29 6 0.0923 -9.6228 -3.4253 30 7 0.0534 -8.5978 -2.6220 31 6 0.5598 -8.9424 -1.4229 32 1 -0.4849 0.8401 0.0004 33 1 -0.5847 -2.0177 0.8411 34 1 -0.5663 -2.1878 -0.9359 35 1 -0.5866 -4.5414 -0.8313 36 1 -1.2823 -4.2591 0.7998 37 1 3.9918 -3.2769 0.1718 38 1 3.2001 -3.7338 1.7043 39 1 3.7507 -5.5757 -0.6750 40 1 4.5991 -5.6038 0.8843 41 1 2.6340 -6.3481 2.0471 42 1 2.7972 -7.3718 0.6051 43 1 1.4960 -8.4635 1.8022 44 1 2.0960 -10.8275 1.5151 45 1 -0.2499 -9.6198 -4.4498 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049501160.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:01 Heat of formation + Delta-G solvation = 106.536202 kcal Electronic energy + Delta-G solvation = -30368.444705 eV Core-core repulsion = 26388.444868 eV Total energy + Delta-G solvation = -3979.999837 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.66486 -40.34619 -38.59192 -37.56466 -35.41752 -33.90993 -32.59246 -32.31034 -31.35635 -30.02200 -28.84814 -28.14962 -25.64767 -24.43650 -23.92581 -23.44880 -22.18187 -21.45374 -20.92058 -19.92265 -19.42059 -18.12184 -17.89031 -16.95240 -16.38766 -16.03209 -15.66122 -15.45568 -15.17837 -14.91135 -14.46938 -14.31808 -14.18611 -13.98898 -13.59899 -13.31489 -13.07621 -12.93491 -12.61947 -12.40711 -12.19435 -11.80447 -11.57594 -11.36488 -11.16371 -11.05993 -10.83260 -10.67201 -10.53360 -10.42878 -10.03549 -9.94577 -9.79242 -9.64081 -9.55920 -9.15308 -8.90558 -8.77425 -8.51798 -8.19531 -6.76703 -5.64827 -2.98818 0.25975 0.87800 2.22163 2.52219 2.86002 3.08705 3.43351 3.48260 3.51096 3.59821 3.80831 4.11051 4.31579 4.50189 4.53960 4.70536 4.83996 4.88783 5.06418 5.12006 5.31230 5.40712 5.42344 5.47738 5.56725 5.64953 5.67395 5.77868 5.81925 5.91410 6.03695 6.13744 6.23167 6.30588 6.34487 6.45018 6.61392 6.76600 6.77862 6.83497 6.97266 7.25947 7.47305 7.52616 7.64001 7.67872 7.74997 7.90329 8.30618 8.40999 9.24784 9.88636 10.57434 11.47228 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.021078 B = 0.003015 C = 0.002860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.068138 B = 9284.839287 C = 9787.367385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.008 4.008 3 Si 0.909 3.091 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.224 4.224 8 H 0.079 0.921 9 N -0.593 5.593 10 C 0.173 3.827 11 C -0.134 4.134 12 C 0.118 3.882 13 H 0.082 0.918 14 C 0.159 3.841 15 H 0.018 0.982 16 C -0.115 4.115 17 C -0.129 4.129 18 C 0.104 3.896 19 N -0.593 5.593 20 C 0.561 3.439 21 O -0.501 6.501 22 C -0.019 4.019 23 C -0.156 4.156 24 C 0.134 3.866 25 N -0.474 5.474 26 C 0.234 3.766 27 N -0.590 5.590 28 H 0.429 0.571 29 C 0.278 3.722 30 N -0.469 5.469 31 C 0.047 3.953 32 H 0.251 0.749 33 H 0.056 0.944 34 H 0.039 0.961 35 H 0.088 0.912 36 H 0.059 0.941 37 H 0.067 0.933 38 H 0.064 0.936 39 H 0.062 0.938 40 H 0.073 0.927 41 H 0.070 0.930 42 H 0.080 0.920 43 H 0.152 0.848 44 H 0.173 0.827 45 H 0.228 0.772 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.105 -24.612 -0.332 25.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.205 4.205 3 Si 0.740 3.260 4 H -0.206 1.206 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.353 4.353 8 H 0.097 0.903 9 N -0.318 5.318 10 C 0.049 3.951 11 C -0.173 4.173 12 C 0.014 3.986 13 H 0.100 0.900 14 C 0.049 3.951 15 H 0.036 0.964 16 C -0.154 4.154 17 C -0.168 4.168 18 C -0.019 4.019 19 N -0.326 5.326 20 C 0.347 3.653 21 O -0.375 6.375 22 C -0.032 4.032 23 C -0.179 4.179 24 C -0.032 4.032 25 N -0.187 5.187 26 C -0.003 4.003 27 N -0.205 5.205 28 H 0.269 0.731 29 C -0.009 4.009 30 N -0.187 5.187 31 C -0.076 4.076 32 H 0.062 0.938 33 H 0.074 0.926 34 H 0.058 0.942 35 H 0.107 0.893 36 H 0.078 0.922 37 H 0.085 0.915 38 H 0.083 0.917 39 H 0.081 0.919 40 H 0.091 0.909 41 H 0.088 0.912 42 H 0.099 0.901 43 H 0.170 0.830 44 H 0.190 0.810 45 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges 4.344 -24.148 -0.898 24.552 hybrid contribution 0.654 0.452 0.015 0.795 sum 4.998 -23.697 -0.883 24.234 Atomic orbital electron populations 1.69968 1.04856 1.24859 1.56957 1.24807 0.95669 0.97585 1.02396 0.86080 0.78670 0.84018 0.77198 1.20570 1.21823 1.21832 1.19033 0.90338 0.82230 1.43669 0.90339 1.44100 1.01840 0.99318 1.86524 1.21731 0.83567 0.88750 1.01077 1.23050 0.94346 0.98019 1.01865 1.22453 0.98982 0.77993 0.99187 0.89991 1.20766 0.91344 0.87184 0.95789 0.96428 1.21433 0.98582 0.94110 1.01271 1.21971 0.97557 0.95711 1.01524 1.22017 0.81680 0.98773 0.99389 1.47896 1.14274 1.11395 1.59025 1.17889 0.84616 0.84229 0.78549 1.90827 1.23204 1.77024 1.46479 1.19773 0.96908 0.95049 0.91494 1.22238 1.00123 0.96009 0.99537 1.22494 0.96157 0.91472 0.93066 1.66198 1.14515 1.39461 0.98573 1.18945 1.01831 0.91753 0.87751 1.42910 1.53566 1.14775 1.09226 0.73073 1.25711 0.95067 0.80553 0.99617 1.70306 1.19944 1.27686 1.00787 1.19224 1.02467 0.92080 0.93838 0.93819 0.92614 0.94243 0.89332 0.92194 0.91475 0.91701 0.91905 0.90889 0.91183 0.90130 0.83046 0.81048 0.75618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.56 10.46 55.49 0.58 -26.98 16 2 C -0.01 -0.23 5.49 -17.43 -0.10 -0.33 16 3 Si 0.91 22.33 29.55 -169.99 -5.02 17.30 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 6 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 7 C -0.22 -6.27 9.94 -15.06 -0.15 -6.42 16 8 H 0.08 2.10 7.31 -52.49 -0.38 1.72 16 9 N -0.59 -15.48 3.35 -163.30 -0.55 -16.02 16 10 C 0.17 4.48 5.47 -1.70 -0.01 4.47 16 11 C -0.13 -2.96 5.11 -25.20 -0.13 -3.08 16 12 C 0.12 2.28 3.32 -66.81 -0.22 2.06 16 13 H 0.08 1.56 8.13 -51.94 -0.42 1.14 16 14 C 0.16 3.39 2.57 -68.37 -0.18 3.21 16 15 H 0.02 0.43 8.06 -51.93 -0.42 0.01 16 16 C -0.12 -1.99 5.45 -27.24 -0.15 -2.14 16 17 C -0.13 -1.68 5.94 -26.21 -0.16 -1.83 16 18 C 0.10 1.25 5.18 -3.23 -0.02 1.23 16 19 N -0.59 -9.59 2.91 -164.89 -0.48 -10.07 16 20 C 0.56 9.77 7.34 -12.37 -0.09 9.68 16 21 O -0.50 -10.62 13.75 5.31 0.07 -10.55 16 22 C -0.02 -0.27 5.07 -104.45 -0.53 -0.80 16 23 C -0.16 -1.55 7.62 -39.02 -0.30 -1.85 16 24 C 0.13 1.16 11.14 -17.56 -0.20 0.97 16 25 N -0.47 -5.14 10.35 -12.30 -0.13 -5.27 16 26 C 0.23 2.75 8.46 -155.65 -1.32 1.43 16 27 N -0.59 -4.70 6.23 -13.21 -0.08 -4.78 16 28 H 0.43 1.78 8.96 -40.82 -0.37 1.41 16 29 C 0.28 2.44 12.97 -89.68 -1.16 1.27 16 30 N -0.47 -6.84 11.23 -11.88 -0.13 -6.97 16 31 C 0.05 0.68 6.94 -84.62 -0.59 0.09 16 32 H 0.25 7.31 8.31 -40.82 -0.34 6.98 16 33 H 0.06 1.56 7.19 -51.93 -0.37 1.18 16 34 H 0.04 1.12 7.81 -51.93 -0.41 0.72 16 35 H 0.09 2.09 6.03 -51.93 -0.31 1.78 16 36 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 37 H 0.07 1.22 7.70 -51.93 -0.40 0.82 16 38 H 0.06 1.10 8.12 -51.93 -0.42 0.68 16 39 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.08 0.82 5.15 -51.93 -0.27 0.55 16 43 H 0.15 1.13 7.11 -52.49 -0.37 0.76 16 44 H 0.17 0.80 8.06 -52.48 -0.42 0.37 16 45 H 0.23 0.78 8.06 -52.48 -0.42 0.36 16 LS Contribution 355.73 15.07 5.36 5.36 Total: -1.00 -38.05 355.73 -11.48 -49.52 By element: Atomic # 1 Polarization: 6.32 SS G_CDS: -5.82 Total: 0.51 kcal Atomic # 6 Polarization: 13.24 SS G_CDS: -5.28 Total: 7.96 kcal Atomic # 7 Polarization: -69.31 SS G_CDS: -0.79 Total: -70.10 kcal Atomic # 8 Polarization: -10.62 SS G_CDS: 0.07 Total: -10.55 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -38.05 -11.48 -49.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049501160.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.060 kcal (2) G-P(sol) polarization free energy of solvation -38.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.524 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds