Wall clock time and date at job start Sat Apr 11 2020 06:20:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86799 * 120.00054 * 2 1 4 4 H 1.48493 * 109.47176 * 274.99853 * 3 2 1 5 5 H 1.48499 * 109.46989 * 34.99715 * 3 2 1 6 6 H 1.48499 * 109.46982 * 154.99469 * 3 2 1 7 7 C 1.38810 * 119.99732 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99751 * 174.88393 * 7 2 1 9 9 N 1.36930 * 120.00269 * 354.88554 * 7 2 1 10 10 C 1.46889 * 125.58155 * 5.13974 * 9 7 2 11 11 C 1.54060 * 107.70672 * 177.04354 * 10 9 7 12 12 C 1.54561 * 103.67273 * 342.84960 * 11 10 9 13 13 H 1.09003 * 108.79173 * 273.78934 * 12 11 10 14 14 C 1.47663 * 125.58470 * 185.16338 * 9 7 2 15 15 H 1.08996 * 110.56377 * 322.57164 * 14 9 7 16 16 C 1.52929 * 107.98731 * 83.59189 * 14 9 7 17 17 C 1.52941 * 109.78895 * 171.84315 * 16 14 9 18 18 C 1.53050 * 108.49410 * 294.00832 * 17 16 14 19 19 N 1.44197 * 111.47867 * 153.28255 * 12 11 10 20 20 C 1.34771 * 117.75947 * 93.66315 * 19 12 11 21 21 O 1.21569 * 120.00134 * 5.87408 * 20 19 12 22 22 C 1.47769 * 119.99882 * 185.59506 * 20 19 12 23 23 C 1.39632 * 121.07056 * 53.28929 * 22 20 19 24 24 C 1.38338 * 119.37970 * 180.02562 * 23 22 20 25 25 N 1.31732 * 121.54199 * 359.97438 * 24 23 22 26 26 C 1.32110 * 121.94663 * 359.97438 * 25 24 23 27 27 N 1.37946 * 133.80859 * 180.02562 * 26 25 24 28 28 H 0.97000 * 126.35827 * 359.92901 * 27 26 25 29 29 C 1.35994 * 107.28821 * 179.31107 * 27 26 25 30 30 N 1.30293 * 110.04993 * 0.56393 * 29 27 26 31 31 C 1.34643 * 109.66839 * 359.49683 * 30 29 27 32 32 H 0.97004 * 119.99741 * 0.02562 * 1 2 3 33 33 H 1.08991 * 109.81370 * 296.59634 * 10 9 7 34 34 H 1.09000 * 109.81007 * 57.43458 * 10 9 7 35 35 H 1.09003 * 110.56607 * 101.43584 * 11 10 9 36 36 H 1.08998 * 110.57177 * 224.15610 * 11 10 9 37 37 H 1.08998 * 109.41735 * 51.74237 * 16 14 9 38 38 H 1.09000 * 109.41929 * 291.94116 * 16 14 9 39 39 H 1.08995 * 109.62969 * 174.30788 * 17 16 14 40 40 H 1.09000 * 109.79907 * 53.80722 * 17 16 14 41 41 H 1.08997 * 109.45993 * 293.77283 * 18 17 16 42 42 H 1.09005 * 109.43941 * 173.81715 * 18 17 16 43 43 H 1.08007 * 120.31786 * 359.97438 * 23 22 20 44 44 H 1.07994 * 119.23499 * 179.97438 * 24 23 22 45 45 H 1.07995 * 124.97516 * 180.02562 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3921 2.1074 -1.3947 5 1 1.5044 2.6198 0.8030 6 1 3.5965 1.4119 0.5918 7 6 2.0102 -1.2022 0.0005 8 1 3.0870 -1.2041 -0.0829 9 7 1.3296 -2.3856 0.1068 10 6 -0.1318 -2.5330 0.1193 11 6 -0.4504 -4.0391 0.1788 12 6 0.8760 -4.7101 -0.2448 13 1 0.9045 -4.7762 -1.3324 14 6 1.9446 -3.7226 0.2280 15 1 2.8414 -3.7888 -0.3879 16 6 2.2876 -3.9528 1.7005 17 6 2.7393 -5.3994 1.9068 18 6 1.5501 -6.3231 1.6330 19 7 1.0006 -6.0333 0.3147 20 6 0.5854 -7.0734 -0.4350 21 8 0.2248 -6.8907 -1.5815 22 6 0.5745 -8.4369 0.1346 23 6 -0.0773 -8.7095 1.3390 24 6 -0.0650 -9.9986 1.8407 25 7 0.5476 -10.9784 1.2082 26 6 1.1807 -10.7845 0.0650 27 7 1.8860 -11.6081 -0.7876 28 1 2.0454 -12.5575 -0.6691 29 6 2.3048 -10.8448 -1.8323 30 7 1.9144 -9.6124 -1.6699 31 6 1.2149 -9.5059 -0.5243 32 1 -0.4850 0.8401 -0.0004 33 1 -0.5461 -2.0329 0.9946 34 1 -0.5544 -2.1006 -0.7877 35 1 -0.7229 -4.3331 1.1924 36 1 -1.2492 -4.2895 -0.5193 37 1 1.4071 -3.7573 2.3125 38 1 3.0902 -3.2770 1.9956 39 1 3.0787 -5.5340 2.9338 40 1 3.5515 -5.6343 1.2189 41 1 0.7826 -6.1611 2.3898 42 1 1.8813 -7.3610 1.6680 43 1 -0.5855 -7.9211 1.8745 44 1 -0.5695 -10.2067 2.7726 45 1 2.8842 -11.2053 -2.6694 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049501162.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:04 Heat of formation + Delta-G solvation = 95.553460 kcal Electronic energy + Delta-G solvation = -30216.498262 eV Core-core repulsion = 26236.022178 eV Total energy + Delta-G solvation = -3980.476084 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.71086 -40.47887 -38.61891 -37.73830 -35.38405 -33.96705 -32.58704 -32.36643 -31.44991 -30.04755 -28.97047 -28.31940 -25.62467 -24.37583 -24.08250 -23.47127 -22.34107 -21.86667 -20.80586 -20.01997 -18.75605 -17.98659 -17.98130 -17.21588 -16.87381 -16.24242 -15.84599 -15.45419 -15.25280 -14.77375 -14.55369 -14.27899 -14.22746 -13.84417 -13.66709 -13.47454 -13.17440 -12.96081 -12.72017 -12.37003 -12.05433 -11.91835 -11.48745 -11.37217 -11.22726 -11.03596 -10.92489 -10.72500 -10.65229 -10.46569 -10.18297 -10.07216 -9.86647 -9.61823 -9.55232 -9.36014 -9.11357 -8.82922 -8.56834 -8.28443 -6.83532 -5.69834 -3.03665 0.24354 0.86583 2.18300 2.46884 2.75515 3.07903 3.41764 3.47113 3.48965 3.52948 3.76504 4.07866 4.29638 4.47653 4.50516 4.69290 4.81713 4.96376 5.07491 5.14355 5.29791 5.40422 5.43463 5.48218 5.54805 5.61430 5.64710 5.72158 5.76735 5.92016 6.02538 6.11830 6.20885 6.26003 6.34045 6.40288 6.58795 6.61539 6.72808 6.78601 7.00561 7.11766 7.41428 7.49946 7.51956 7.60455 7.66498 7.85545 8.25867 8.31449 9.23152 9.83000 10.48415 11.41435 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.024523 B = 0.002783 C = 0.002746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.522428 B =10058.381974 C =10194.298335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.006 4.006 3 Si 0.911 3.089 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.227 4.227 8 H 0.078 0.922 9 N -0.595 5.595 10 C 0.179 3.821 11 C -0.151 4.151 12 C 0.136 3.864 13 H 0.095 0.905 14 C 0.162 3.838 15 H 0.054 0.946 16 C -0.130 4.130 17 C -0.132 4.132 18 C 0.109 3.891 19 N -0.579 5.579 20 C 0.553 3.447 21 O -0.512 6.512 22 C -0.017 4.017 23 C -0.152 4.152 24 C 0.137 3.863 25 N -0.475 5.475 26 C 0.236 3.764 27 N -0.589 5.589 28 H 0.430 0.570 29 C 0.278 3.722 30 N -0.474 5.474 31 C 0.043 3.957 32 H 0.252 0.748 33 H 0.044 0.956 34 H 0.049 0.951 35 H 0.056 0.944 36 H 0.062 0.938 37 H 0.063 0.937 38 H 0.064 0.936 39 H 0.071 0.929 40 H 0.064 0.936 41 H 0.066 0.934 42 H 0.074 0.926 43 H 0.153 0.847 44 H 0.174 0.826 45 H 0.228 0.772 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.875 -24.819 4.730 25.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.202 4.202 3 Si 0.741 3.259 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.355 4.355 8 H 0.096 0.904 9 N -0.320 5.320 10 C 0.054 3.946 11 C -0.190 4.190 12 C 0.031 3.969 13 H 0.113 0.887 14 C 0.054 3.946 15 H 0.072 0.928 16 C -0.170 4.170 17 C -0.170 4.170 18 C -0.014 4.014 19 N -0.310 5.310 20 C 0.339 3.661 21 O -0.387 6.387 22 C -0.030 4.030 23 C -0.175 4.175 24 C -0.029 4.029 25 N -0.188 5.188 26 C -0.001 4.001 27 N -0.204 5.204 28 H 0.270 0.730 29 C -0.009 4.009 30 N -0.192 5.192 31 C -0.080 4.080 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.067 0.933 35 H 0.075 0.925 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.082 0.918 39 H 0.089 0.911 40 H 0.082 0.918 41 H 0.084 0.916 42 H 0.092 0.908 43 H 0.170 0.830 44 H 0.191 0.809 45 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges 2.804 -24.513 3.854 24.972 hybrid contribution 0.369 0.487 0.300 0.681 sum 3.173 -24.025 4.154 24.587 Atomic orbital electron populations 1.69983 1.04884 1.25020 1.56731 1.24804 0.95686 0.97610 1.02132 0.86120 0.78641 0.83645 0.77476 1.21686 1.21702 1.20656 1.19014 0.90794 0.82204 1.43491 0.90426 1.44507 1.01478 1.00004 1.85975 1.21052 0.84341 0.87852 1.01314 1.23100 0.96395 0.99328 1.00188 1.21193 0.96722 0.79831 0.99117 0.88720 1.20826 0.93952 0.86086 0.93760 0.92760 1.22115 1.01543 0.93574 0.99748 1.21844 0.96996 0.96698 1.01494 1.21587 0.96393 0.99341 0.84046 1.46968 1.60962 1.06273 1.16820 1.18111 0.78667 0.83735 0.85581 1.90821 1.46822 1.84566 1.16497 1.19624 0.96567 0.93153 0.93677 1.22211 1.01006 0.99395 0.94919 1.22509 0.94833 0.87059 0.98488 1.66210 1.09481 1.36586 1.06509 1.18938 0.98815 0.89592 0.92783 1.42901 1.45887 1.12411 1.19238 0.73031 1.25670 0.97562 0.85951 0.91716 1.70266 1.14636 1.17665 1.16667 1.19201 1.01718 0.92718 0.94321 0.93757 0.93809 0.93318 0.92487 0.91934 0.91863 0.91760 0.91065 0.91750 0.91608 0.90775 0.82975 0.80949 0.75627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.93 10.32 55.49 0.57 -26.36 16 2 C -0.01 -0.17 5.48 -17.43 -0.10 -0.26 16 3 Si 0.91 22.09 29.56 -169.99 -5.02 17.06 16 4 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.23 -6.24 10.26 -15.06 -0.15 -6.40 16 8 H 0.08 2.07 7.83 -52.48 -0.41 1.66 16 9 N -0.60 -14.99 2.94 -163.88 -0.48 -15.47 16 10 C 0.18 4.39 5.39 -3.28 -0.02 4.38 16 11 C -0.15 -2.99 6.46 -25.36 -0.16 -3.15 16 12 C 0.14 2.62 2.81 -68.34 -0.19 2.43 16 13 H 0.09 2.07 7.00 -51.93 -0.36 1.71 16 14 C 0.16 3.35 3.27 -67.34 -0.22 3.13 16 15 H 0.05 1.16 8.14 -51.93 -0.42 0.73 16 16 C -0.13 -2.27 5.31 -26.80 -0.14 -2.41 16 17 C -0.13 -1.76 6.10 -26.74 -0.16 -1.92 16 18 C 0.11 1.38 5.03 -4.43 -0.02 1.36 16 19 N -0.58 -9.34 2.79 -168.55 -0.47 -9.81 16 20 C 0.55 9.50 7.14 -12.37 -0.09 9.41 16 21 O -0.51 -10.85 16.33 5.31 0.09 -10.76 16 22 C -0.02 -0.24 4.40 -104.45 -0.46 -0.70 16 23 C -0.15 -1.54 8.05 -39.02 -0.31 -1.85 16 24 C 0.14 1.19 11.14 -17.56 -0.20 0.99 16 25 N -0.47 -5.05 10.35 -12.30 -0.13 -5.18 16 26 C 0.24 2.67 8.46 -155.64 -1.32 1.35 16 27 N -0.59 -4.40 6.23 -13.21 -0.08 -4.48 16 28 H 0.43 1.58 8.96 -40.82 -0.37 1.21 16 29 C 0.28 2.24 12.97 -89.67 -1.16 1.08 16 30 N -0.47 -6.53 11.23 -11.88 -0.13 -6.66 16 31 C 0.04 0.60 6.99 -84.62 -0.59 0.01 16 32 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 33 H 0.04 1.17 7.47 -51.93 -0.39 0.78 16 34 H 0.05 1.34 7.41 -51.93 -0.38 0.95 16 35 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 37 H 0.06 1.17 8.02 -51.93 -0.42 0.75 16 38 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 39 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 40 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.07 0.73 7.89 -51.93 -0.41 0.32 16 42 H 0.07 0.83 5.86 -51.93 -0.30 0.53 16 43 H 0.15 1.23 7.50 -52.48 -0.39 0.83 16 44 H 0.17 0.83 8.06 -52.49 -0.42 0.41 16 45 H 0.23 0.60 8.06 -52.49 -0.42 0.17 16 LS Contribution 361.56 15.07 5.45 5.45 Total: -1.00 -36.99 361.56 -11.47 -48.45 By element: Atomic # 1 Polarization: 6.27 SS G_CDS: -5.95 Total: 0.32 kcal Atomic # 6 Polarization: 12.75 SS G_CDS: -5.30 Total: 7.45 kcal Atomic # 7 Polarization: -67.24 SS G_CDS: -0.72 Total: -67.96 kcal Atomic # 8 Polarization: -10.85 SS G_CDS: 0.09 Total: -10.76 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -36.99 -11.47 -48.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049501162.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.005 kcal (2) G-P(sol) polarization free energy of solvation -36.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.451 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds