Wall clock time and date at job start Sat Apr 11 2020 06:20:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86799 * 120.00054 * 2 1 4 4 H 1.48493 * 109.47176 * 274.99853 * 3 2 1 5 5 H 1.48499 * 109.46989 * 34.99715 * 3 2 1 6 6 H 1.48499 * 109.46982 * 154.99469 * 3 2 1 7 7 C 1.38810 * 119.99732 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99751 * 174.88393 * 7 2 1 9 9 N 1.36930 * 120.00269 * 354.88554 * 7 2 1 10 10 C 1.46889 * 125.58155 * 5.13974 * 9 7 2 11 11 C 1.54060 * 107.70672 * 177.04354 * 10 9 7 12 12 C 1.54561 * 103.67273 * 342.84960 * 11 10 9 13 13 H 1.09003 * 108.79173 * 273.78934 * 12 11 10 14 14 C 1.47663 * 125.58470 * 185.16338 * 9 7 2 15 15 H 1.08996 * 110.56377 * 322.57164 * 14 9 7 16 16 C 1.52929 * 107.98731 * 83.59189 * 14 9 7 17 17 C 1.52941 * 109.78895 * 171.84315 * 16 14 9 18 18 C 1.53050 * 108.49410 * 294.00832 * 17 16 14 19 19 N 1.44197 * 111.47867 * 153.28255 * 12 11 10 20 20 C 1.34771 * 117.75947 * 93.66315 * 19 12 11 21 21 O 1.21569 * 120.00134 * 5.87408 * 20 19 12 22 22 C 1.47769 * 119.99882 * 185.59506 * 20 19 12 23 23 C 1.39632 * 121.07056 * 53.28929 * 22 20 19 24 24 C 1.38338 * 119.37970 * 180.02562 * 23 22 20 25 25 N 1.31732 * 121.54199 * 359.97438 * 24 23 22 26 26 C 1.32110 * 121.94663 * 359.97438 * 25 24 23 27 27 N 1.37946 * 133.80859 * 180.02562 * 26 25 24 28 28 H 0.97000 * 126.35827 * 359.92901 * 27 26 25 29 29 C 1.35994 * 107.28821 * 179.31107 * 27 26 25 30 30 N 1.30293 * 110.04993 * 0.56393 * 29 27 26 31 31 C 1.34643 * 109.66839 * 359.49683 * 30 29 27 32 32 H 0.97004 * 119.99741 * 0.02562 * 1 2 3 33 33 H 1.08991 * 109.81370 * 296.59634 * 10 9 7 34 34 H 1.09000 * 109.81007 * 57.43458 * 10 9 7 35 35 H 1.09003 * 110.56607 * 101.43584 * 11 10 9 36 36 H 1.08998 * 110.57177 * 224.15610 * 11 10 9 37 37 H 1.08998 * 109.41735 * 51.74237 * 16 14 9 38 38 H 1.09000 * 109.41929 * 291.94116 * 16 14 9 39 39 H 1.08995 * 109.62969 * 174.30788 * 17 16 14 40 40 H 1.09000 * 109.79907 * 53.80722 * 17 16 14 41 41 H 1.08997 * 109.45993 * 293.77283 * 18 17 16 42 42 H 1.09005 * 109.43941 * 173.81715 * 18 17 16 43 43 H 1.08007 * 120.31786 * 359.97438 * 23 22 20 44 44 H 1.07994 * 119.23499 * 179.97438 * 24 23 22 45 45 H 1.07995 * 124.97516 * 180.02562 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3921 2.1074 -1.3947 5 1 1.5044 2.6198 0.8030 6 1 3.5965 1.4119 0.5918 7 6 2.0102 -1.2022 0.0005 8 1 3.0870 -1.2041 -0.0829 9 7 1.3296 -2.3856 0.1068 10 6 -0.1318 -2.5330 0.1193 11 6 -0.4504 -4.0391 0.1788 12 6 0.8760 -4.7101 -0.2448 13 1 0.9045 -4.7762 -1.3324 14 6 1.9446 -3.7226 0.2280 15 1 2.8414 -3.7888 -0.3879 16 6 2.2876 -3.9528 1.7005 17 6 2.7393 -5.3994 1.9068 18 6 1.5501 -6.3231 1.6330 19 7 1.0006 -6.0333 0.3147 20 6 0.5854 -7.0734 -0.4350 21 8 0.2248 -6.8907 -1.5815 22 6 0.5745 -8.4369 0.1346 23 6 -0.0773 -8.7095 1.3390 24 6 -0.0650 -9.9986 1.8407 25 7 0.5476 -10.9784 1.2082 26 6 1.1807 -10.7845 0.0650 27 7 1.8860 -11.6081 -0.7876 28 1 2.0454 -12.5575 -0.6691 29 6 2.3048 -10.8448 -1.8323 30 7 1.9144 -9.6124 -1.6699 31 6 1.2149 -9.5059 -0.5243 32 1 -0.4850 0.8401 -0.0004 33 1 -0.5461 -2.0329 0.9946 34 1 -0.5544 -2.1006 -0.7877 35 1 -0.7229 -4.3331 1.1924 36 1 -1.2492 -4.2895 -0.5193 37 1 1.4071 -3.7573 2.3125 38 1 3.0902 -3.2770 1.9956 39 1 3.0787 -5.5340 2.9338 40 1 3.5515 -5.6343 1.2189 41 1 0.7826 -6.1611 2.3898 42 1 1.8813 -7.3610 1.6680 43 1 -0.5855 -7.9211 1.8745 44 1 -0.5695 -10.2067 2.7726 45 1 2.8842 -11.2053 -2.6694 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049501162.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:03 Heat of formation + Delta-G solvation = 70.606604 kcal Electronic energy + Delta-G solvation = -30217.580039 eV Core-core repulsion = 26236.022178 eV Total energy + Delta-G solvation = -3981.557861 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.45677 -41.81826 -39.69274 -39.00019 -36.92235 -34.88806 -34.13997 -33.95050 -32.46187 -30.86616 -30.71489 -29.90874 -26.91087 -26.16355 -25.22753 -24.23536 -23.45789 -23.03068 -22.10304 -21.65507 -19.93516 -19.23887 -18.79427 -18.74949 -18.20717 -17.35734 -16.80098 -16.71342 -16.41472 -16.29085 -16.00551 -15.61324 -15.28380 -15.04015 -14.94356 -14.78021 -14.47897 -14.11723 -13.88129 -13.74415 -13.61418 -13.43025 -13.14169 -12.87753 -12.64018 -12.39946 -12.35350 -12.20761 -12.03729 -11.97837 -11.90190 -11.67888 -11.56466 -11.22174 -11.18116 -10.68997 -10.26212 -9.92274 -9.68691 -9.58027 -8.90593 -7.84405 -5.20493 -0.56782 0.12088 1.43471 1.46637 1.47990 1.57277 1.62710 1.77986 1.88342 2.50079 2.70404 3.04363 3.26484 3.33358 3.51142 3.58680 3.73334 3.83122 3.85672 3.96906 4.04401 4.10071 4.13373 4.23011 4.33495 4.38834 4.56971 4.59413 4.63748 4.68049 4.76633 4.82642 4.87609 4.96284 5.02635 5.04170 5.18168 5.33361 5.42315 5.51132 5.54332 5.63532 5.64364 5.73739 6.19132 6.20529 6.25923 6.72054 6.81982 7.01252 7.09662 7.75653 8.40434 9.25930 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.024523 B = 0.002783 C = 0.002746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.522428 B =10058.381974 C =10194.298335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.064 4.064 3 Si 0.978 3.022 4 H -0.291 1.291 5 H -0.293 1.293 6 H -0.266 1.266 7 C -0.237 4.237 8 H 0.082 0.918 9 N -0.615 5.615 10 C 0.192 3.808 11 C -0.133 4.133 12 C 0.152 3.848 13 H 0.059 0.941 14 C 0.158 3.842 15 H 0.041 0.959 16 C -0.117 4.117 17 C -0.121 4.121 18 C 0.105 3.895 19 N -0.576 5.576 20 C 0.554 3.446 21 O -0.568 6.568 22 C -0.051 4.051 23 C -0.135 4.135 24 C 0.144 3.856 25 N -0.477 5.477 26 C 0.224 3.776 27 N -0.572 5.572 28 H 0.448 0.552 29 C 0.303 3.697 30 N -0.544 5.544 31 C 0.015 3.985 32 H 0.247 0.753 33 H 0.018 0.982 34 H 0.006 0.994 35 H 0.084 0.916 36 H 0.061 0.939 37 H 0.057 0.943 38 H 0.053 0.947 39 H 0.109 0.891 40 H 0.059 0.941 41 H 0.095 0.905 42 H 0.097 0.903 43 H 0.176 0.824 44 H 0.218 0.782 45 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.940 -27.962 7.273 29.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.257 4.257 3 Si 0.806 3.194 4 H -0.218 1.218 5 H -0.219 1.219 6 H -0.191 1.191 7 C -0.366 4.366 8 H 0.099 0.901 9 N -0.340 5.340 10 C 0.067 3.933 11 C -0.172 4.172 12 C 0.047 3.953 13 H 0.077 0.923 14 C 0.051 3.949 15 H 0.059 0.941 16 C -0.157 4.157 17 C -0.160 4.160 18 C -0.016 4.016 19 N -0.306 5.306 20 C 0.342 3.658 21 O -0.446 6.446 22 C -0.064 4.064 23 C -0.157 4.157 24 C -0.022 4.022 25 N -0.190 5.190 26 C -0.013 4.013 27 N -0.188 5.188 28 H 0.292 0.708 29 C 0.016 3.984 30 N -0.264 5.264 31 C -0.108 4.108 32 H 0.056 0.944 33 H 0.036 0.964 34 H 0.024 0.976 35 H 0.102 0.898 36 H 0.080 0.920 37 H 0.076 0.924 38 H 0.072 0.928 39 H 0.128 0.872 40 H 0.078 0.922 41 H 0.113 0.887 42 H 0.115 0.885 43 H 0.193 0.807 44 H 0.235 0.765 45 H 0.291 0.709 Dipole moment (debyes) X Y Z Total from point charges 3.918 -27.745 6.442 28.751 hybrid contribution 0.078 1.353 -0.555 1.464 sum 3.996 -26.392 5.888 27.334 Atomic orbital electron populations 1.70198 1.06319 1.25273 1.58072 1.25640 0.96564 1.00928 1.02529 0.85070 0.77920 0.79268 0.77118 1.21818 1.21905 1.19073 1.19372 0.91229 0.83390 1.42607 0.90064 1.44752 1.01936 1.01207 1.86079 1.20728 0.84121 0.90498 0.97973 1.22898 0.96661 0.95909 1.01759 1.20676 0.95806 0.81550 0.97301 0.92318 1.21001 0.93484 0.84376 0.96069 0.94091 1.21885 1.00974 0.96570 0.96312 1.21809 0.97101 0.93379 1.03702 1.21920 0.96802 1.00391 0.82462 1.46974 1.60919 1.04577 1.18146 1.18697 0.77145 0.85093 0.84841 1.90779 1.49223 1.85573 1.19040 1.19492 0.99975 0.91060 0.95902 1.22520 0.99176 1.00797 0.93186 1.23248 0.93747 0.85924 0.99321 1.66365 1.09374 1.37169 1.06125 1.19131 0.99528 0.89375 0.93284 1.42916 1.44611 1.13107 1.18206 0.70787 1.26594 0.95317 0.84534 0.91976 1.70223 1.17327 1.20803 1.17997 1.19489 1.02477 0.93858 0.94969 0.94386 0.96379 0.97604 0.89757 0.92011 0.92380 0.92844 0.87241 0.92242 0.88741 0.88513 0.80703 0.76543 0.70895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.12 10.32 21.65 0.22 -57.90 16 2 C -0.06 -3.67 5.48 84.86 0.47 -3.20 16 3 Si 0.98 46.45 29.56 68.60 2.03 48.47 16 4 H -0.29 -13.78 7.11 99.48 0.71 -13.08 16 5 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 6 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 7 C -0.24 -13.47 10.26 84.03 0.86 -12.61 16 8 H 0.08 4.43 7.83 -2.91 -0.02 4.41 16 9 N -0.61 -32.26 2.94 -672.40 -1.97 -34.23 16 10 C 0.19 9.94 5.39 86.66 0.47 10.40 16 11 C -0.13 -5.41 6.46 31.48 0.20 -5.21 16 12 C 0.15 6.09 2.81 45.95 0.13 6.21 16 13 H 0.06 2.76 7.00 -2.39 -0.02 2.75 16 14 C 0.16 6.69 3.27 44.74 0.15 6.83 16 15 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 16 C -0.12 -4.00 5.31 30.55 0.16 -3.84 16 17 C -0.12 -2.89 6.10 30.59 0.19 -2.71 16 18 C 0.11 2.33 5.03 86.54 0.44 2.77 16 19 N -0.58 -18.26 2.79 -805.43 -2.25 -20.51 16 20 C 0.55 19.20 7.14 86.76 0.62 19.82 16 21 O -0.57 -25.35 16.33 -3.93 -0.06 -25.42 16 22 C -0.05 -1.37 4.40 -19.75 -0.09 -1.46 16 23 C -0.13 -2.27 8.05 22.63 0.18 -2.09 16 24 C 0.14 1.89 11.14 84.73 0.94 2.83 16 25 N -0.48 -8.56 10.35 -192.83 -2.00 -10.55 16 26 C 0.22 4.58 8.46 133.93 1.13 5.71 16 27 N -0.57 -7.03 6.23 -195.70 -1.22 -8.25 16 28 H 0.45 1.85 8.96 -92.71 -0.83 1.02 16 29 C 0.30 4.24 12.97 180.02 2.34 6.58 16 30 N -0.54 -14.79 11.23 -191.50 -2.15 -16.94 16 31 C 0.01 0.40 6.99 40.02 0.28 0.68 16 32 H 0.25 14.68 8.31 -92.71 -0.77 13.91 16 33 H 0.02 1.01 7.47 -2.39 -0.02 1.00 16 34 H 0.01 0.34 7.41 -2.39 -0.02 0.32 16 35 H 0.08 2.97 8.14 -2.39 -0.02 2.95 16 36 H 0.06 2.52 8.14 -2.39 -0.02 2.50 16 37 H 0.06 2.05 8.02 -2.39 -0.02 2.03 16 38 H 0.05 1.92 8.14 -2.39 -0.02 1.91 16 39 H 0.11 1.89 8.14 -2.39 -0.02 1.87 16 40 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 41 H 0.09 1.63 7.89 -2.39 -0.02 1.61 16 42 H 0.10 1.81 5.86 -2.38 -0.01 1.80 16 43 H 0.18 2.04 7.50 -2.91 -0.02 2.02 16 44 H 0.22 0.81 8.06 -2.91 -0.02 0.79 16 45 H 0.28 0.52 8.06 -2.91 -0.02 0.50 16 Total: -1.00 -88.65 361.56 1.27 -87.38 By element: Atomic # 1 Polarization: 7.02 SS G_CDS: 0.21 Total: 7.23 kcal Atomic # 6 Polarization: 22.26 SS G_CDS: 8.47 Total: 30.72 kcal Atomic # 7 Polarization: -139.02 SS G_CDS: -9.36 Total: -148.39 kcal Atomic # 8 Polarization: -25.35 SS G_CDS: -0.06 Total: -25.42 kcal Atomic # 14 Polarization: 46.45 SS G_CDS: 2.03 Total: 48.47 kcal Total: -88.65 1.27 -87.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049501162.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.982 kcal (2) G-P(sol) polarization free energy of solvation -88.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.375 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds