Wall clock time and date at job start Sat Apr 11 2020 06:20:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86807 * 119.99827 * 2 1 4 4 H 1.48491 * 109.47072 * 270.00010 * 3 2 1 5 5 H 1.48496 * 109.47133 * 30.00491 * 3 2 1 6 6 H 1.48504 * 109.46740 * 150.00106 * 3 2 1 7 7 C 1.38813 * 120.00333 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00012 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99385 * 0.02562 * 7 2 1 10 10 C 1.47118 * 125.77307 * 359.97438 * 9 7 2 11 11 C 1.54566 * 107.25587 * 182.59794 * 10 9 7 12 12 C 1.54416 * 102.44752 * 21.66743 * 11 10 9 13 13 H 1.09002 * 110.00388 * 80.25954 * 12 11 10 14 14 C 1.48220 * 125.76192 * 179.97438 * 9 7 2 15 15 H 1.09002 * 111.52674 * 32.97557 * 14 9 7 16 16 C 1.53011 * 107.11094 * 270.86287 * 14 9 7 17 17 C 1.52739 * 110.80245 * 191.93952 * 16 14 9 18 18 C 1.53463 * 108.61506 * 63.65826 * 17 16 14 19 19 N 1.45126 * 111.60176 * 203.42546 * 12 11 10 20 20 C 1.34780 * 119.57754 * 248.63518 * 19 12 11 21 21 O 1.21587 * 120.00023 * 354.30159 * 20 19 12 22 22 C 1.47506 * 119.99710 * 174.30218 * 20 19 12 23 23 C 1.36879 * 120.60687 * 129.83207 * 22 20 19 24 24 C 1.40144 * 119.25811 * 179.97438 * 23 22 20 25 25 N 1.31132 * 120.46044 * 0.02562 * 24 23 22 26 26 C 1.33703 * 121.18848 * 359.97438 * 25 24 23 27 27 C 1.39063 * 132.55863 * 179.97438 * 26 25 24 28 28 C 1.38508 * 107.66815 * 180.02562 * 27 26 25 29 29 N 1.31524 * 109.03875 * 359.97438 * 28 27 26 30 30 N 1.37293 * 120.63583 * 359.73906 * 26 25 24 31 31 H 0.97001 * 119.99828 * 359.97438 * 1 2 3 32 32 H 1.08997 * 109.88105 * 302.01265 * 10 9 7 33 33 H 1.08999 * 109.88498 * 63.18485 * 10 9 7 34 34 H 1.08997 * 110.80685 * 139.90659 * 11 10 9 35 35 H 1.08999 * 110.81119 * 263.22874 * 11 10 9 36 36 H 1.08992 * 109.21128 * 71.59833 * 16 14 9 37 37 H 1.08997 * 109.17584 * 312.25386 * 16 14 9 38 38 H 1.08996 * 109.63782 * 183.45021 * 17 16 14 39 39 H 1.09002 * 109.63946 * 303.87149 * 17 16 14 40 40 H 1.08996 * 109.83454 * 61.55412 * 18 17 16 41 41 H 1.09007 * 109.82951 * 182.50331 * 18 17 16 42 42 H 1.08003 * 120.37226 * 359.94536 * 23 22 20 43 43 H 1.07997 * 119.76318 * 179.97438 * 24 23 22 44 44 H 1.07998 * 126.16638 * 359.97438 * 27 26 25 45 45 H 1.08003 * 125.47865 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4477 2.6527 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 -0.1381 -2.5359 0.0005 11 6 -0.4461 -4.0491 0.0674 12 6 0.8583 -4.6284 0.6569 13 1 0.8714 -4.4925 1.7383 14 6 1.9340 -3.7396 0.0005 15 1 2.8738 -3.7551 0.5524 16 6 2.1389 -4.1410 -1.4617 17 6 2.4846 -5.6246 -1.5735 18 6 1.2912 -6.4453 -1.0662 19 7 1.0225 -6.0295 0.3160 20 6 0.9305 -6.9645 1.2824 21 8 0.8149 -6.6278 2.4450 22 6 0.9701 -8.3962 0.9295 23 6 1.8180 -9.2512 1.5804 24 6 1.8320 -10.6061 1.2227 25 7 1.0428 -11.0517 0.2750 26 6 0.2076 -10.2327 -0.3726 27 6 -0.7129 -10.4431 -1.3935 28 6 -1.3078 -9.2257 -1.6806 29 7 -0.7988 -8.3032 -0.8934 30 7 0.1512 -8.8979 -0.0561 31 1 -0.4850 0.8401 0.0004 32 1 -0.5616 -2.0325 0.8697 33 1 -0.5535 -2.1131 -0.9142 34 1 -1.2900 -4.2436 0.7292 35 1 -0.6363 -4.4500 -0.9281 36 1 2.9512 -3.5506 -1.8853 37 1 1.2233 -3.9432 -2.0189 38 1 2.6862 -5.8762 -2.6147 39 1 3.3636 -5.8427 -0.9670 40 1 0.4163 -6.2475 -1.6855 41 1 1.5337 -7.5076 -1.0958 42 1 2.4693 -8.8856 2.3606 43 1 2.4981 -11.2879 1.7307 44 1 -0.9250 -11.3857 -1.8761 45 1 -2.0680 -9.0607 -2.4299 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049519815.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:06 Heat of formation + Delta-G solvation = 116.339893 kcal Electronic energy + Delta-G solvation = -30696.559209 eV Core-core repulsion = 26716.984492 eV Total energy + Delta-G solvation = -3979.574717 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.49521 -41.76034 -39.83053 -38.88167 -36.99189 -35.24229 -34.08969 -33.89540 -32.10707 -30.98772 -30.18323 -29.95961 -27.44124 -26.19970 -25.68786 -24.44857 -23.63099 -23.22098 -22.01693 -21.45463 -19.98487 -19.48776 -18.84065 -18.53896 -18.13315 -17.61590 -17.03316 -16.78581 -16.31537 -16.24776 -16.02950 -15.49636 -15.25657 -15.12994 -15.03992 -14.50482 -14.42898 -14.19603 -13.91969 -13.86034 -13.71316 -13.62708 -13.18546 -12.84714 -12.69685 -12.53905 -12.44111 -12.35980 -12.18416 -12.07775 -11.99168 -11.86270 -11.60036 -11.50937 -11.30627 -10.87314 -10.73352 -10.60902 -9.85314 -9.03325 -8.93919 -7.85528 -5.22156 -0.88934 -0.18807 0.65567 1.32089 1.44250 1.47069 1.50010 1.56233 1.69018 2.34576 2.47879 2.67504 2.91433 3.22934 3.32272 3.44979 3.71814 3.77861 3.87422 3.88600 3.91315 3.96995 4.00215 4.12691 4.24556 4.43532 4.43812 4.44796 4.49719 4.57126 4.61663 4.72035 4.86424 4.87118 4.95009 4.99325 5.05721 5.21222 5.28714 5.33518 5.41577 5.50062 5.51662 5.57907 5.69334 6.02035 6.14933 6.35511 6.51223 6.62525 7.06382 7.72139 8.37486 9.24622 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.023541 B = 0.003047 C = 0.002960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.118095 B = 9188.401808 C = 9456.149990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.065 4.065 3 Si 0.978 3.022 4 H -0.285 1.285 5 H -0.297 1.297 6 H -0.269 1.269 7 C -0.236 4.236 8 H 0.085 0.915 9 N -0.616 5.616 10 C 0.195 3.805 11 C -0.131 4.131 12 C 0.145 3.855 13 H 0.081 0.919 14 C 0.155 3.845 15 H 0.060 0.940 16 C -0.118 4.118 17 C -0.122 4.122 18 C 0.124 3.876 19 N -0.563 5.563 20 C 0.558 3.442 21 O -0.552 6.552 22 C 0.126 3.874 23 C -0.148 4.148 24 C 0.194 3.806 25 N -0.465 5.465 26 C 0.231 3.769 27 C -0.255 4.255 28 C 0.089 3.911 29 N -0.335 5.335 30 N -0.313 5.313 31 H 0.246 0.754 32 H 0.013 0.987 33 H 0.012 0.988 34 H 0.064 0.936 35 H 0.076 0.924 36 H 0.057 0.943 37 H 0.049 0.951 38 H 0.099 0.901 39 H 0.073 0.927 40 H 0.078 0.922 41 H 0.080 0.920 42 H 0.197 0.803 43 H 0.238 0.762 44 H 0.185 0.815 45 H 0.232 0.768 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.080 -25.557 -3.293 26.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.258 4.258 3 Si 0.807 3.193 4 H -0.212 1.212 5 H -0.224 1.224 6 H -0.193 1.193 7 C -0.365 4.365 8 H 0.103 0.897 9 N -0.341 5.341 10 C 0.069 3.931 11 C -0.170 4.170 12 C 0.040 3.960 13 H 0.099 0.901 14 C 0.048 3.952 15 H 0.078 0.922 16 C -0.158 4.158 17 C -0.161 4.161 18 C 0.003 3.997 19 N -0.291 5.291 20 C 0.344 3.656 21 O -0.430 6.430 22 C 0.009 3.991 23 C -0.173 4.173 24 C 0.010 3.990 25 N -0.177 5.177 26 C 0.004 3.996 27 C -0.286 4.286 28 C -0.087 4.087 29 N -0.160 5.160 30 N -0.088 5.088 31 H 0.056 0.944 32 H 0.032 0.968 33 H 0.031 0.969 34 H 0.083 0.917 35 H 0.095 0.905 36 H 0.075 0.925 37 H 0.068 0.932 38 H 0.117 0.883 39 H 0.092 0.908 40 H 0.096 0.904 41 H 0.098 0.902 42 H 0.214 0.786 43 H 0.254 0.746 44 H 0.202 0.798 45 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 3.696 -24.660 -2.849 25.098 hybrid contribution -0.157 1.582 0.147 1.597 sum 3.539 -23.078 -2.702 23.504 Atomic orbital electron populations 1.70174 1.06333 1.25264 1.58272 1.25637 0.96554 1.00960 1.02640 0.85079 0.77634 0.79160 0.77452 1.21202 1.22384 1.19334 1.19410 0.90985 0.83255 1.42852 0.89732 1.44947 1.01850 1.00541 1.86785 1.20830 0.84168 0.90071 0.98027 1.22895 0.96632 0.96435 1.01048 1.21425 0.96066 0.78747 0.99729 0.90062 1.21524 0.94266 0.84278 0.95159 0.92216 1.21902 1.01229 0.95666 0.97001 1.21914 0.97291 0.93985 1.02902 1.21951 0.98896 0.98418 0.80462 1.47456 1.67238 1.05470 1.08975 1.18026 0.77468 0.84819 0.85281 1.90855 1.51106 1.81522 1.19512 1.20472 0.93920 0.94434 0.90298 1.22566 0.99218 0.94297 1.01238 1.24224 0.92462 0.93074 0.89270 1.68054 1.05835 1.34662 1.09110 1.21245 0.99207 0.80093 0.99012 1.21400 1.02740 1.01462 1.02957 1.24509 0.97829 0.89657 0.96736 1.78121 1.07458 1.21446 1.08948 1.47455 1.27400 1.09351 1.24582 0.94435 0.96826 0.96941 0.91747 0.90507 0.92471 0.93213 0.88282 0.90787 0.90400 0.90170 0.78569 0.74555 0.79771 0.75225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.71 10.33 21.65 0.22 -57.48 16 2 C -0.06 -3.70 5.49 84.86 0.47 -3.24 16 3 Si 0.98 45.93 29.55 68.60 2.03 47.95 16 4 H -0.29 -13.10 7.11 99.48 0.71 -12.40 16 5 H -0.30 -14.16 7.11 99.48 0.71 -13.45 16 6 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 7 C -0.24 -13.12 10.29 84.03 0.86 -12.25 16 8 H 0.08 4.46 7.83 -2.91 -0.02 4.44 16 9 N -0.62 -31.49 2.91 -667.05 -1.94 -33.43 16 10 C 0.19 9.89 5.19 86.79 0.45 10.34 16 11 C -0.13 -5.29 6.07 31.61 0.19 -5.10 16 12 C 0.15 5.56 3.10 46.14 0.14 5.71 16 13 H 0.08 3.53 6.97 -2.39 -0.02 3.51 16 14 C 0.15 6.27 3.60 45.07 0.16 6.43 16 15 H 0.06 2.43 8.14 -2.39 -0.02 2.42 16 16 C -0.12 -4.02 5.11 30.51 0.16 -3.86 16 17 C -0.12 -3.02 6.10 30.66 0.19 -2.83 16 18 C 0.12 3.22 4.45 86.47 0.38 3.60 16 19 N -0.56 -17.62 2.73 -798.10 -2.18 -19.81 16 20 C 0.56 17.47 7.23 86.69 0.63 18.09 16 21 O -0.55 -20.84 16.38 -3.99 -0.07 -20.91 16 22 C 0.13 3.05 5.26 40.36 0.21 3.26 16 23 C -0.15 -2.29 9.74 22.41 0.22 -2.07 16 24 C 0.19 2.17 11.26 85.26 0.96 3.13 16 25 N -0.47 -8.29 10.44 -192.63 -2.01 -10.30 16 26 C 0.23 4.95 7.93 133.23 1.06 6.01 16 27 C -0.26 -4.50 10.91 22.53 0.25 -4.25 16 28 C 0.09 1.59 11.94 84.80 1.01 2.60 16 29 N -0.33 -8.38 10.31 -57.54 -0.59 -8.97 16 30 N -0.31 -7.65 2.87 -181.99 -0.52 -8.17 16 31 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 32 H 0.01 0.78 7.30 -2.39 -0.02 0.76 16 33 H 0.01 0.70 7.60 -2.39 -0.02 0.68 16 34 H 0.06 2.56 8.14 -2.39 -0.02 2.54 16 35 H 0.08 2.88 6.85 -2.39 -0.02 2.86 16 36 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 37 H 0.05 1.85 7.12 -2.39 -0.02 1.83 16 38 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 39 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 40 H 0.08 2.13 7.10 -2.39 -0.02 2.12 16 41 H 0.08 1.90 5.43 -2.38 -0.01 1.88 16 42 H 0.20 2.04 8.06 -2.91 -0.02 2.01 16 43 H 0.24 0.07 8.06 -2.91 -0.02 0.05 16 44 H 0.19 2.27 8.06 -2.91 -0.02 2.24 16 45 H 0.23 2.18 8.06 -2.91 -0.02 2.15 16 Total: -1.00 -76.92 357.96 3.29 -73.63 By element: Atomic # 1 Polarization: 10.87 SS G_CDS: 1.02 Total: 11.89 kcal Atomic # 6 Polarization: 18.25 SS G_CDS: 7.34 Total: 25.59 kcal Atomic # 7 Polarization: -131.13 SS G_CDS: -7.03 Total: -138.16 kcal Atomic # 8 Polarization: -20.84 SS G_CDS: -0.07 Total: -20.91 kcal Atomic # 14 Polarization: 45.93 SS G_CDS: 2.03 Total: 47.95 kcal Total: -76.92 3.29 -73.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049519815.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 189.973 kcal (2) G-P(sol) polarization free energy of solvation -76.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.633 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds