Wall clock time and date at job start Sat Apr 11 2020 06:20:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86793 * 119.99923 * 2 1 4 4 H 1.48503 * 109.47335 * 270.00041 * 3 2 1 5 5 H 1.48501 * 109.47426 * 30.00266 * 3 2 1 6 6 H 1.48508 * 109.47126 * 150.00289 * 3 2 1 7 7 C 1.38812 * 119.99885 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00033 * 179.97438 * 7 2 1 9 9 N 1.36943 * 120.00086 * 0.02562 * 7 2 1 10 10 C 1.48380 * 126.55985 * 359.97438 * 9 7 2 11 11 C 1.57552 * 107.17634 * 174.40236 * 10 9 7 12 12 C 1.53436 * 100.72881 * 337.62645 * 11 10 9 13 13 H 1.09001 * 111.14411 * 281.50921 * 12 11 10 14 14 C 1.45021 * 126.56221 * 179.97438 * 9 7 2 15 15 H 1.08997 * 108.25991 * 96.07297 * 14 9 7 16 16 C 1.51081 * 118.61241 * 330.84781 * 14 9 7 17 17 C 1.53866 * 107.34736 * 176.49544 * 16 14 9 18 18 C 1.52715 * 111.52293 * 56.93060 * 17 16 14 19 19 N 1.45720 * 116.37399 * 153.04187 * 12 11 10 20 20 C 1.34777 * 122.22721 * 9.05299 * 19 12 11 21 21 O 1.21597 * 119.99864 * 355.96965 * 20 19 12 22 22 C 1.47499 * 119.99827 * 175.96941 * 20 19 12 23 23 C 1.36887 * 120.60875 * 134.88249 * 22 20 19 24 24 C 1.40137 * 119.26011 * 179.78097 * 23 22 20 25 25 N 1.31145 * 120.46085 * 0.49842 * 24 23 22 26 26 C 1.33707 * 121.18167 * 359.75071 * 25 24 23 27 27 C 1.39071 * 132.55182 * 180.02562 * 26 25 24 28 28 C 1.38498 * 107.66655 * 179.97438 * 27 26 25 29 29 N 1.31526 * 109.04112 * 359.97438 * 28 27 26 30 30 N 1.37288 * 120.64228 * 359.97438 * 26 25 24 31 31 H 0.96996 * 120.00247 * 359.97438 * 1 2 3 32 32 H 1.09000 * 109.95892 * 293.87800 * 10 9 7 33 33 H 1.09001 * 109.96578 * 55.08258 * 10 9 7 34 34 H 1.09001 * 111.86679 * 219.66928 * 11 10 9 35 35 H 1.08995 * 110.98573 * 95.21144 * 11 10 9 36 36 H 1.09008 * 109.88230 * 57.03028 * 16 14 9 37 37 H 1.09005 * 109.94421 * 295.99314 * 16 14 9 38 38 H 1.09004 * 109.06792 * 296.40071 * 17 16 14 39 39 H 1.09003 * 109.01430 * 177.42250 * 17 16 14 40 40 H 1.09008 * 109.15845 * 191.05840 * 18 17 16 41 41 H 1.08998 * 109.12264 * 71.84108 * 18 17 16 42 42 H 1.08004 * 120.36918 * 359.97438 * 23 22 20 43 43 H 1.07995 * 119.76956 * 180.24772 * 24 23 22 44 44 H 1.08002 * 126.16130 * 359.97261 * 27 26 25 45 45 H 1.08002 * 125.47787 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4476 2.6526 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0016 10 6 -0.1486 -2.5576 -0.0017 11 6 -0.4397 -4.0989 -0.1500 12 6 0.8711 -4.5771 -0.7883 13 1 0.8951 -4.3502 -1.8541 14 6 1.9023 -3.7187 -0.0028 15 1 1.9377 -4.0765 1.0262 16 6 3.2528 -3.9212 -0.6491 17 6 3.6524 -5.3902 -0.4262 18 6 2.6012 -6.3476 -0.9836 19 7 1.2444 -5.9634 -0.5391 20 6 0.4080 -6.8373 0.0552 21 8 -0.6713 -6.4603 0.4693 22 6 0.8020 -8.2510 0.2034 23 6 0.6089 -8.9077 1.3888 24 6 0.9895 -10.2521 1.4969 25 7 1.5338 -10.8730 0.4781 26 6 1.7354 -10.2476 -0.6864 27 6 2.2803 -10.6647 -1.8960 28 6 2.2399 -9.5896 -2.7682 29 7 1.7041 -8.5579 -2.1531 30 7 1.3752 -8.9324 -0.8458 31 1 -0.4850 0.8400 0.0004 32 1 -0.5656 -2.1890 0.9354 33 1 -0.5854 -2.0168 -0.8413 34 1 -1.2871 -4.2906 -0.8082 35 1 -0.5914 -4.5630 0.8245 36 1 3.9878 -3.2627 -0.1861 37 1 3.1890 -3.7123 -1.7170 38 1 3.7666 -5.5700 0.6428 39 1 4.6045 -5.5785 -0.9224 40 1 2.8181 -7.3581 -0.6373 41 1 2.6408 -6.3265 -2.0727 42 1 0.1652 -8.3964 2.2304 43 1 0.8371 -10.7794 2.4270 44 1 2.6656 -11.6495 -2.1155 45 1 2.5911 -9.5975 -3.7895 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049519818.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:09 Heat of formation + Delta-G solvation = 147.813234 kcal Electronic energy + Delta-G solvation = -30739.542875 eV Core-core repulsion = 26761.332944 eV Total energy + Delta-G solvation = -3978.209931 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.69379 -40.40268 -38.52458 -37.74389 -35.57344 -34.26047 -32.75640 -32.11818 -31.34259 -29.47703 -29.04904 -28.22881 -26.24144 -24.57056 -24.32592 -23.64456 -22.37634 -21.56976 -20.84996 -19.96421 -19.33791 -18.41107 -17.53601 -17.04979 -16.60820 -16.51165 -15.69677 -15.33027 -15.12574 -14.78971 -14.59207 -14.39597 -14.15951 -13.88031 -13.66324 -13.45060 -13.21558 -13.06818 -12.93399 -12.52184 -12.32765 -11.98650 -11.69160 -11.47874 -11.44535 -11.16708 -10.91586 -10.81389 -10.62890 -10.52624 -10.28780 -10.14158 -10.08593 -9.90228 -9.82710 -9.64837 -9.27862 -8.63034 -8.39966 -8.24212 -6.86931 -5.72883 -3.07547 -0.07925 0.53126 1.55154 2.22685 2.61863 2.73295 3.12063 3.38696 3.43561 3.45769 3.50914 3.77465 3.98594 4.46697 4.54208 4.67193 4.75008 4.83554 5.03438 5.08873 5.17726 5.25300 5.29971 5.42107 5.48174 5.51448 5.63369 5.65053 5.73338 5.77422 5.94311 6.00089 6.02306 6.12996 6.19470 6.22353 6.33404 6.43629 6.64476 6.65860 6.81751 7.07143 7.10001 7.23089 7.38566 7.55322 7.61627 7.80314 7.96176 8.21539 9.16281 9.79856 10.47460 11.39123 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.022861 B = 0.003130 C = 0.002956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.522966 B = 8944.637660 C = 9468.587561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.006 4.006 3 Si 0.911 3.089 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.282 1.282 7 C -0.227 4.227 8 H 0.079 0.921 9 N -0.592 5.592 10 C 0.175 3.825 11 C -0.136 4.136 12 C 0.115 3.885 13 H 0.086 0.914 14 C 0.161 3.839 15 H 0.019 0.981 16 C -0.115 4.115 17 C -0.132 4.132 18 C 0.120 3.880 19 N -0.570 5.570 20 C 0.561 3.439 21 O -0.505 6.505 22 C 0.160 3.840 23 C -0.172 4.172 24 C 0.181 3.819 25 N -0.455 5.455 26 C 0.252 3.748 27 C -0.257 4.257 28 C 0.085 3.915 29 N -0.297 5.297 30 N -0.303 5.303 31 H 0.253 0.747 32 H 0.041 0.959 33 H 0.057 0.943 34 H 0.063 0.937 35 H 0.085 0.915 36 H 0.069 0.931 37 H 0.066 0.934 38 H 0.061 0.939 39 H 0.074 0.926 40 H 0.066 0.934 41 H 0.081 0.919 42 H 0.176 0.824 43 H 0.188 0.812 44 H 0.163 0.837 45 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.212 -21.957 -0.888 22.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.203 4.203 3 Si 0.742 3.258 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.356 4.356 8 H 0.097 0.903 9 N -0.317 5.317 10 C 0.050 3.950 11 C -0.175 4.175 12 C 0.011 3.989 13 H 0.104 0.896 14 C 0.052 3.948 15 H 0.036 0.964 16 C -0.154 4.154 17 C -0.170 4.170 18 C -0.003 4.003 19 N -0.300 5.300 20 C 0.345 3.655 21 O -0.380 6.380 22 C 0.042 3.958 23 C -0.197 4.197 24 C -0.004 4.004 25 N -0.166 5.166 26 C 0.025 3.975 27 C -0.288 4.288 28 C -0.093 4.093 29 N -0.122 5.122 30 N -0.077 5.077 31 H 0.063 0.937 32 H 0.059 0.941 33 H 0.076 0.924 34 H 0.081 0.919 35 H 0.104 0.896 36 H 0.088 0.912 37 H 0.085 0.915 38 H 0.079 0.921 39 H 0.092 0.908 40 H 0.084 0.916 41 H 0.099 0.901 42 H 0.193 0.807 43 H 0.205 0.795 44 H 0.181 0.819 45 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges 4.581 -21.099 -1.042 21.616 hybrid contribution 0.509 0.714 -0.040 0.878 sum 5.090 -20.385 -1.082 21.039 Atomic orbital electron populations 1.69933 1.04893 1.25150 1.56663 1.24808 0.95685 0.97659 1.02141 0.86136 0.78587 0.83571 0.77549 1.21600 1.21668 1.20718 1.18983 0.90337 0.82099 1.44135 0.90296 1.44076 1.01779 0.99290 1.86561 1.22097 0.83586 0.88127 1.01202 1.23421 0.94200 0.98357 1.01506 1.22626 0.99058 0.77275 0.99932 0.89610 1.20760 0.91274 0.87235 0.95562 0.96360 1.21435 0.98500 0.93940 1.01477 1.21970 0.97798 0.95910 1.01358 1.21885 0.80582 0.97413 1.00393 1.47897 1.14672 1.11212 1.56232 1.17486 0.85001 0.83037 0.79956 1.90893 1.21760 1.76704 1.48684 1.20942 0.94185 0.94492 0.86227 1.22105 1.03877 0.96567 0.97113 1.23416 0.89032 0.90838 0.97072 1.67974 1.14929 1.35683 0.98019 1.20808 0.99899 0.81946 0.94895 1.21008 1.15135 1.02272 0.90378 1.23928 0.95235 0.89772 1.00339 1.78186 1.25102 1.22405 0.86460 1.47483 1.39454 1.10405 1.10360 0.93660 0.94063 0.92436 0.91860 0.89623 0.91232 0.91528 0.92061 0.90760 0.91571 0.90068 0.80675 0.79537 0.81923 0.78361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.92 10.46 55.49 0.58 -26.34 16 2 C -0.01 -0.18 5.49 -17.43 -0.10 -0.27 16 3 Si 0.91 21.90 29.55 -169.99 -5.02 16.88 16 4 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.23 -6.19 9.92 -15.06 -0.15 -6.34 16 8 H 0.08 2.06 7.26 -52.49 -0.38 1.68 16 9 N -0.59 -14.95 3.35 -161.95 -0.54 -15.49 16 10 C 0.17 4.33 5.53 -0.52 0.00 4.33 16 11 C -0.14 -2.83 5.24 -24.02 -0.13 -2.96 16 12 C 0.11 2.18 3.26 -66.81 -0.22 1.96 16 13 H 0.09 1.67 8.14 -51.93 -0.42 1.25 16 14 C 0.16 3.32 2.59 -68.37 -0.18 3.14 16 15 H 0.02 0.42 8.08 -51.93 -0.42 0.00 16 16 C -0.11 -1.97 5.41 -27.25 -0.15 -2.12 16 17 C -0.13 -1.77 5.94 -26.43 -0.16 -1.93 16 18 C 0.12 1.65 4.54 -3.45 -0.02 1.63 16 19 N -0.57 -9.25 2.91 -165.23 -0.48 -9.73 16 20 C 0.56 9.07 7.35 -12.49 -0.09 8.98 16 21 O -0.51 -9.37 13.72 5.28 0.07 -9.30 16 22 C 0.16 2.11 5.68 -81.98 -0.47 1.65 16 23 C -0.17 -1.67 9.70 -39.36 -0.38 -2.05 16 24 C 0.18 1.45 11.26 -17.13 -0.19 1.26 16 25 N -0.45 -4.88 10.44 -12.23 -0.13 -5.01 16 26 C 0.25 3.01 7.93 -155.56 -1.23 1.77 16 27 C -0.26 -2.54 10.91 -39.18 -0.43 -2.97 16 28 C 0.08 0.80 11.93 -17.59 -0.21 0.59 16 29 N -0.30 -3.77 9.43 30.46 0.29 -3.49 16 30 N -0.30 -3.94 2.85 -8.87 -0.03 -3.96 16 31 H 0.25 7.21 8.31 -40.82 -0.34 6.88 16 32 H 0.04 1.12 7.81 -51.93 -0.41 0.72 16 33 H 0.06 1.56 7.19 -51.93 -0.37 1.19 16 34 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 35 H 0.09 1.83 6.07 -51.93 -0.32 1.51 16 36 H 0.07 1.23 7.66 -51.92 -0.40 0.84 16 37 H 0.07 1.15 8.12 -51.93 -0.42 0.73 16 38 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.07 0.87 5.10 -51.92 -0.26 0.61 16 41 H 0.08 1.10 7.59 -51.93 -0.39 0.71 16 42 H 0.18 1.36 8.06 -52.48 -0.42 0.93 16 43 H 0.19 0.65 8.06 -52.49 -0.42 0.23 16 44 H 0.16 1.22 8.06 -52.49 -0.42 0.80 16 45 H 0.20 1.08 8.06 -52.49 -0.42 0.66 16 LS Contribution 354.70 15.07 5.35 5.35 Total: -1.00 -33.54 354.70 -9.90 -43.44 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: -5.89 Total: 1.00 kcal Atomic # 6 Polarization: 10.75 SS G_CDS: -4.09 Total: 6.66 kcal Atomic # 7 Polarization: -63.72 SS G_CDS: -0.31 Total: -64.03 kcal Atomic # 8 Polarization: -9.37 SS G_CDS: 0.07 Total: -9.30 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -33.54 -9.90 -43.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049519818.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 191.253 kcal (2) G-P(sol) polarization free energy of solvation -33.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 157.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.440 kcal (6) G-S(sol) free energy of system = (1) + (5) 147.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds