Wall clock time and date at job start Sat Apr 11 2020 06:20:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86803 * 120.00132 * 2 1 4 4 H 1.48501 * 109.47069 * 180.02562 * 3 2 1 5 5 H 1.48492 * 109.47297 * 300.00396 * 3 2 1 6 6 H 1.48496 * 109.47147 * 60.00443 * 3 2 1 7 7 C 1.38821 * 119.99972 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99449 * 179.97438 * 7 2 1 9 9 N 1.36929 * 119.99641 * 359.97438 * 7 2 1 10 10 C 1.48385 * 126.56541 * 359.97438 * 9 7 2 11 11 C 1.55472 * 106.97479 * 185.52396 * 10 9 7 12 12 C 1.53430 * 101.67432 * 22.59770 * 11 10 9 13 13 H 1.09005 * 111.75515 * 78.23901 * 12 11 10 14 14 C 1.45029 * 126.56086 * 179.97438 * 9 7 2 15 15 H 1.08995 * 108.25861 * 263.91427 * 14 9 7 16 16 C 1.51088 * 119.18593 * 28.78579 * 14 9 7 17 17 C 1.53872 * 107.33663 * 183.89723 * 16 14 9 18 18 C 1.52709 * 111.52553 * 303.07601 * 17 16 14 19 19 N 1.45724 * 116.37249 * 207.27999 * 12 11 10 20 20 C 1.34784 * 122.22742 * 350.12912 * 19 12 11 21 21 O 1.21585 * 119.99617 * 355.08616 * 20 19 12 22 22 C 1.47500 * 119.99548 * 175.09153 * 20 19 12 23 23 C 1.36887 * 120.60707 * 233.92198 * 22 20 19 24 24 C 1.40130 * 119.26076 * 179.97438 * 23 22 20 25 25 N 1.31143 * 120.46281 * 0.02562 * 24 23 22 26 26 C 1.33708 * 121.18414 * 359.97438 * 25 24 23 27 27 C 1.39062 * 132.55461 * 180.02562 * 26 25 24 28 28 C 1.38512 * 107.66703 * 179.97438 * 27 26 25 29 29 N 1.31527 * 109.03510 * 0.02562 * 28 27 26 30 30 N 1.37296 * 120.63382 * 359.73901 * 26 25 24 31 31 H 0.97003 * 120.00088 * 359.97438 * 1 2 3 32 32 H 1.08999 * 109.95902 * 66.14538 * 10 9 7 33 33 H 1.09001 * 109.95858 * 304.90727 * 10 9 7 34 34 H 1.09004 * 110.98510 * 264.49932 * 11 10 9 35 35 H 1.09004 * 110.98534 * 140.69676 * 11 10 9 36 36 H 1.09005 * 109.88243 * 303.35516 * 16 14 9 37 37 H 1.09003 * 109.88419 * 64.36676 * 16 14 9 38 38 H 1.09003 * 109.06559 * 63.60098 * 17 16 14 39 39 H 1.09004 * 109.06855 * 182.61466 * 17 16 14 40 40 H 1.09006 * 109.16046 * 168.93240 * 18 17 16 41 41 H 1.09000 * 109.16169 * 288.16875 * 18 17 16 42 42 H 1.08006 * 120.37081 * 359.95835 * 23 22 20 43 43 H 1.08000 * 119.77242 * 180.02562 * 24 23 22 44 44 H 1.08002 * 126.17199 * 0.02562 * 27 26 25 45 45 H 1.07997 * 125.48046 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8916 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3255 -2.3880 -0.0005 10 6 -0.1486 -2.5576 0.0005 11 6 -0.4303 -4.0799 0.1432 12 6 0.8717 -4.5778 0.7842 13 1 0.9050 -4.3610 1.8520 14 6 1.9023 -3.7187 -0.0016 15 1 1.9367 -4.0752 -1.0310 16 6 3.2565 -3.9352 0.6325 17 6 3.6455 -5.4045 0.3927 18 6 2.5928 -6.3607 0.9489 19 7 1.2347 -5.9641 0.5196 20 6 0.3889 -6.8271 -0.0774 21 8 -0.7490 -6.4839 -0.3337 22 6 0.8438 -8.1879 -0.4196 23 6 0.7184 -8.6640 -1.6969 24 6 1.1605 -9.9609 -1.9908 25 7 1.6882 -10.7118 -1.0541 26 6 1.8194 -10.2650 0.1994 27 6 2.3330 -10.8434 1.3550 28 6 2.2170 -9.9155 2.3768 29 7 1.6654 -8.8203 1.9011 30 7 1.4073 -8.9999 0.5378 31 1 -0.4850 0.8401 0.0004 32 1 -0.5663 -2.1881 -0.9360 33 1 -0.5846 -2.0180 0.8413 34 1 -0.5866 -4.5411 -0.8320 35 1 -1.2821 -4.2595 0.7993 36 1 3.9919 -3.2768 0.1700 37 1 3.2011 -3.7351 1.7025 38 1 3.7505 -5.5747 -0.6789 39 1 4.5998 -5.6044 0.8800 40 1 2.8008 -7.3692 0.5913 41 1 2.6400 -6.3506 2.0378 42 1 0.2834 -8.0472 -2.4694 43 1 1.0660 -10.3448 -2.9959 44 1 2.7484 -11.8367 1.4403 45 1 2.5285 -10.0672 3.3997 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049519819.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:12 Heat of formation + Delta-G solvation = 143.578848 kcal Electronic energy + Delta-G solvation = -30713.773593 eV Core-core repulsion = 26735.380046 eV Total energy + Delta-G solvation = -3978.393547 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.68676 -40.43635 -38.51910 -37.78528 -35.61981 -34.26998 -32.78800 -32.14287 -31.35330 -29.47925 -29.06298 -28.31649 -26.27509 -24.57867 -24.32315 -23.66901 -22.37312 -21.61157 -20.85500 -19.93191 -19.33813 -18.43148 -17.55488 -17.07311 -16.62157 -16.51797 -15.76181 -15.36890 -15.12557 -14.77412 -14.62446 -14.35551 -14.16892 -13.92142 -13.66828 -13.48227 -13.24332 -13.03089 -12.91061 -12.57953 -12.35757 -11.97128 -11.68555 -11.50206 -11.47748 -11.17868 -10.92141 -10.81817 -10.66619 -10.55727 -10.29308 -10.14144 -10.10074 -9.93522 -9.83824 -9.67329 -9.38282 -8.64886 -8.42555 -8.24348 -6.88424 -5.74186 -3.08827 -0.04617 0.53345 1.51945 2.24089 2.56703 2.72811 3.10593 3.37844 3.43042 3.45766 3.51155 3.76537 3.98877 4.45563 4.54378 4.66495 4.72856 4.82932 5.00594 5.08341 5.16322 5.23409 5.27152 5.39556 5.47762 5.49370 5.61605 5.65357 5.71013 5.75971 5.92237 5.98244 6.01661 6.13398 6.19260 6.20345 6.29952 6.43746 6.62121 6.64799 6.77465 7.02786 7.09388 7.23534 7.35472 7.54293 7.59755 7.79015 7.93776 8.20018 9.14894 9.78590 10.45825 11.37909 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.022659 B = 0.003115 C = 0.002968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.393506 B = 8987.075704 C = 9432.422206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.006 4.006 3 Si 0.911 3.089 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.290 1.290 7 C -0.228 4.228 8 H 0.080 0.920 9 N -0.592 5.592 10 C 0.173 3.827 11 C -0.129 4.129 12 C 0.115 3.885 13 H 0.087 0.913 14 C 0.161 3.839 15 H 0.018 0.982 16 C -0.115 4.115 17 C -0.131 4.131 18 C 0.117 3.883 19 N -0.571 5.571 20 C 0.563 3.437 21 O -0.504 6.504 22 C 0.164 3.836 23 C -0.176 4.176 24 C 0.183 3.817 25 N -0.456 5.456 26 C 0.253 3.747 27 C -0.258 4.258 28 C 0.086 3.914 29 N -0.299 5.299 30 N -0.303 5.303 31 H 0.253 0.747 32 H 0.041 0.959 33 H 0.058 0.942 34 H 0.077 0.923 35 H 0.064 0.936 36 H 0.069 0.931 37 H 0.066 0.934 38 H 0.061 0.939 39 H 0.074 0.926 40 H 0.069 0.931 41 H 0.078 0.922 42 H 0.175 0.825 43 H 0.188 0.812 44 H 0.164 0.836 45 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.552 -21.558 -0.070 22.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.203 4.203 3 Si 0.741 3.259 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.217 1.217 7 C -0.356 4.356 8 H 0.098 0.902 9 N -0.316 5.316 10 C 0.048 3.952 11 C -0.168 4.168 12 C 0.011 3.989 13 H 0.105 0.895 14 C 0.051 3.949 15 H 0.035 0.965 16 C -0.154 4.154 17 C -0.170 4.170 18 C -0.005 4.005 19 N -0.302 5.302 20 C 0.346 3.654 21 O -0.379 6.379 22 C 0.045 3.955 23 C -0.201 4.201 24 C -0.002 4.002 25 N -0.167 5.167 26 C 0.026 3.974 27 C -0.289 4.289 28 C -0.091 4.091 29 N -0.124 5.124 30 N -0.077 5.077 31 H 0.063 0.937 32 H 0.060 0.940 33 H 0.077 0.923 34 H 0.095 0.905 35 H 0.083 0.917 36 H 0.088 0.912 37 H 0.085 0.915 38 H 0.080 0.920 39 H 0.093 0.907 40 H 0.087 0.913 41 H 0.097 0.903 42 H 0.192 0.808 43 H 0.205 0.795 44 H 0.181 0.819 45 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges 4.866 -20.786 0.227 21.349 hybrid contribution 0.500 0.736 -0.014 0.890 sum 5.366 -20.050 0.212 20.757 Atomic orbital electron populations 1.69948 1.04898 1.25043 1.56693 1.24813 0.95683 0.97665 1.02118 0.86066 0.78695 0.83849 0.77261 1.20519 1.21753 1.21739 1.19030 0.90376 0.82106 1.44071 0.90245 1.44100 1.01761 0.99259 1.86519 1.21751 0.83663 0.88414 1.01334 1.22955 0.94614 0.98196 1.01018 1.22608 0.99120 0.77243 0.99910 0.89466 1.20755 0.91293 0.87281 0.95570 0.96502 1.21435 0.98515 0.93931 1.01503 1.21953 0.97787 0.95849 1.01373 1.21855 0.80676 0.97626 1.00386 1.47936 1.14524 1.11446 1.56278 1.17453 0.85602 0.82695 0.79611 1.90907 1.17391 1.75872 1.53719 1.20891 0.93966 0.92748 0.87870 1.22072 1.04274 0.98898 0.94827 1.23407 0.88743 0.89004 0.98999 1.67977 1.16073 1.34550 0.98126 1.20813 0.99541 0.83907 0.93171 1.21009 1.15464 1.03288 0.89106 1.23920 0.94818 0.89901 1.00506 1.78140 1.26136 1.23398 0.84684 1.47480 1.39448 1.11929 1.08843 0.93704 0.94036 0.92339 0.90453 0.91679 0.91199 0.91531 0.92009 0.90726 0.91314 0.90339 0.80754 0.79517 0.81896 0.78350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.78 10.46 55.49 0.58 -26.20 16 2 C -0.01 -0.17 5.49 -17.43 -0.10 -0.27 16 3 Si 0.91 21.81 29.55 -169.99 -5.02 16.79 16 4 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 7 C -0.23 -6.17 9.94 -15.06 -0.15 -6.31 16 8 H 0.08 2.07 7.31 -52.49 -0.38 1.68 16 9 N -0.59 -14.82 3.35 -163.28 -0.55 -15.37 16 10 C 0.17 4.26 5.47 -1.69 -0.01 4.25 16 11 C -0.13 -2.67 4.94 -25.20 -0.12 -2.79 16 12 C 0.11 2.16 3.32 -66.80 -0.22 1.94 16 13 H 0.09 1.68 8.14 -51.93 -0.42 1.26 16 14 C 0.16 3.26 2.57 -68.36 -0.18 3.09 16 15 H 0.02 0.38 8.05 -51.93 -0.42 -0.04 16 16 C -0.12 -1.95 5.45 -27.24 -0.15 -2.10 16 17 C -0.13 -1.74 5.93 -26.43 -0.16 -1.90 16 18 C 0.12 1.60 4.89 -3.45 -0.02 1.58 16 19 N -0.57 -9.23 2.91 -165.23 -0.48 -9.71 16 20 C 0.56 9.13 7.20 -12.48 -0.09 9.04 16 21 O -0.50 -9.46 14.05 5.29 0.07 -9.38 16 22 C 0.16 2.18 5.59 -81.99 -0.46 1.72 16 23 C -0.18 -1.74 9.77 -39.36 -0.38 -2.12 16 24 C 0.18 1.49 11.26 -17.14 -0.19 1.30 16 25 N -0.46 -4.94 10.44 -12.23 -0.13 -5.07 16 26 C 0.25 3.04 7.93 -155.56 -1.23 1.81 16 27 C -0.26 -2.56 10.91 -39.17 -0.43 -2.99 16 28 C 0.09 0.82 11.94 -17.58 -0.21 0.61 16 29 N -0.30 -3.84 10.26 30.46 0.31 -3.52 16 30 N -0.30 -3.97 2.81 -8.87 -0.02 -4.00 16 31 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 32 H 0.04 1.12 7.81 -51.93 -0.41 0.71 16 33 H 0.06 1.58 7.19 -51.93 -0.37 1.20 16 34 H 0.08 1.62 6.37 -51.93 -0.33 1.29 16 35 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 36 H 0.07 1.23 7.70 -51.93 -0.40 0.83 16 37 H 0.07 1.14 8.12 -51.93 -0.42 0.71 16 38 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 40 H 0.07 0.91 4.89 -51.93 -0.25 0.65 16 41 H 0.08 1.05 8.09 -51.93 -0.42 0.63 16 42 H 0.18 1.37 8.06 -52.48 -0.42 0.95 16 43 H 0.19 0.68 8.06 -52.49 -0.42 0.25 16 44 H 0.16 1.23 8.06 -52.49 -0.42 0.80 16 45 H 0.20 1.08 8.06 -52.49 -0.42 0.65 16 LS Contribution 356.39 15.07 5.37 5.37 Total: -1.00 -33.56 356.39 -9.89 -43.45 By element: Atomic # 1 Polarization: 6.71 SS G_CDS: -5.92 Total: 0.79 kcal Atomic # 6 Polarization: 10.95 SS G_CDS: -4.10 Total: 6.86 kcal Atomic # 7 Polarization: -63.58 SS G_CDS: -0.29 Total: -63.87 kcal Atomic # 8 Polarization: -9.46 SS G_CDS: 0.07 Total: -9.38 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -33.56 -9.89 -43.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049519819.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 187.029 kcal (2) G-P(sol) polarization free energy of solvation -33.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 153.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.450 kcal (6) G-S(sol) free energy of system = (1) + (5) 143.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds