Wall clock time and date at job start Sat Apr 11 2020 06:20:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86797 * 119.99644 * 2 1 4 4 H 1.48494 * 109.47309 * 269.99506 * 3 2 1 5 5 H 1.48497 * 109.47146 * 30.00295 * 3 2 1 6 6 H 1.48506 * 109.46727 * 150.00094 * 3 2 1 7 7 C 1.38811 * 119.99755 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99686 * 179.97438 * 7 2 1 9 9 N 1.36935 * 120.00140 * 0.02562 * 7 2 1 10 10 C 1.46884 * 125.58422 * 359.96835 * 9 7 2 11 11 C 1.54055 * 107.70945 * 177.05121 * 10 9 7 12 12 C 1.54575 * 103.67005 * 342.84860 * 11 10 9 13 13 H 1.08998 * 108.78497 * 273.79741 * 12 11 10 14 14 C 1.47653 * 125.57997 * 180.02562 * 9 7 2 15 15 H 1.08999 * 110.56924 * 322.56133 * 14 9 7 16 16 C 1.52926 * 107.99546 * 83.58400 * 14 9 7 17 17 C 1.52938 * 109.79625 * 171.83969 * 16 14 9 18 18 C 1.53056 * 108.49635 * 294.01415 * 17 16 14 19 19 N 1.44189 * 111.47764 * 153.28484 * 12 11 10 20 20 C 1.34777 * 117.76151 * 93.66226 * 19 12 11 21 21 O 1.21589 * 120.00015 * 6.79719 * 20 19 12 22 22 C 1.47497 * 119.99829 * 186.79075 * 20 19 12 23 23 C 1.36880 * 120.61461 * 27.16887 * 22 20 19 24 24 C 1.40130 * 119.26358 * 179.97438 * 23 22 20 25 25 N 1.31148 * 120.46062 * 0.02562 * 24 23 22 26 26 C 1.33699 * 121.18437 * 359.69510 * 25 24 23 27 27 C 1.39069 * 132.55237 * 179.55212 * 26 25 24 28 28 C 1.38501 * 107.66875 * 180.52250 * 27 26 25 29 29 N 1.31534 * 109.03907 * 0.26598 * 28 27 26 30 30 N 1.37292 * 120.63586 * 0.60312 * 26 25 24 31 31 H 0.97004 * 119.99916 * 0.02562 * 1 2 3 32 32 H 1.09000 * 109.81235 * 296.60042 * 10 9 7 33 33 H 1.09000 * 109.80596 * 57.43514 * 10 9 7 34 34 H 1.09002 * 110.56973 * 101.43050 * 11 10 9 35 35 H 1.08992 * 110.57444 * 224.15773 * 11 10 9 36 36 H 1.09007 * 109.41257 * 51.74302 * 16 14 9 37 37 H 1.08999 * 109.41770 * 291.94159 * 16 14 9 38 38 H 1.08996 * 109.63727 * 174.30772 * 17 16 14 39 39 H 1.09004 * 109.79478 * 53.80980 * 17 16 14 40 40 H 1.08997 * 109.45586 * 293.77003 * 18 17 16 41 41 H 1.08997 * 109.44053 * 173.81617 * 18 17 16 42 42 H 1.08003 * 120.36946 * 359.95839 * 23 22 20 43 43 H 1.07999 * 119.77409 * 179.97438 * 24 23 22 44 44 H 1.08004 * 126.16441 * 0.79254 * 27 26 25 45 45 H 1.07994 * 125.48222 * 180.27923 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4476 2.6526 0.7001 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 -0.1363 -2.5310 0.0007 11 6 -0.4601 -4.0352 -0.0749 12 6 0.8639 -4.6701 -0.5577 13 1 0.8917 -4.6383 -1.6469 14 6 1.9360 -3.7325 0.0016 15 1 2.8326 -3.7465 -0.6181 16 6 2.2782 -4.0948 1.4474 17 6 2.7248 -5.5556 1.5234 18 6 1.5325 -6.4471 1.1683 19 7 0.9840 -6.0384 -0.1193 20 6 0.5650 -7.0058 -0.9590 21 8 0.2205 -6.7219 -2.0900 22 6 0.5245 -8.4089 -0.5060 23 6 0.3600 -8.7091 0.8193 24 6 0.3251 -10.0519 1.2183 25 7 0.4490 -11.0119 0.3334 26 6 0.6050 -10.7395 -0.9662 27 6 0.7635 -11.5506 -2.0847 28 6 0.8943 -10.7240 -3.1883 29 7 0.8293 -9.4703 -2.7955 30 7 0.6519 -9.4404 -1.4081 31 1 -0.4850 0.8401 -0.0004 32 1 -0.5486 -2.1100 0.9177 33 1 -0.5577 -2.0175 -0.8636 34 1 -0.7332 -4.4180 0.9085 35 1 -1.2599 -4.2193 -0.7920 36 1 1.3982 -3.9518 2.0747 37 1 3.0831 -3.4508 1.8016 38 1 3.0638 -5.7828 2.5341 39 1 3.5363 -5.7307 0.8170 40 1 0.7656 -6.3508 1.9368 41 1 1.8601 -7.4850 1.1103 42 1 0.2584 -7.9197 1.5494 43 1 0.1960 -10.2981 2.2619 44 1 0.7773 -12.6305 -2.0921 45 1 1.0280 -11.0553 -4.2074 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049519821.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:15 Heat of formation + Delta-G solvation = 148.027255 kcal Electronic energy + Delta-G solvation = -30322.332974 eV Core-core repulsion = 26344.132325 eV Total energy + Delta-G solvation = -3978.200650 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.65745 -40.74148 -38.40632 -38.02479 -35.76587 -34.26226 -32.81962 -32.42317 -31.32423 -29.60358 -29.05469 -28.37709 -26.38537 -24.63292 -24.39765 -23.67683 -22.51910 -22.06315 -20.61534 -20.07200 -18.54956 -18.37224 -18.18029 -17.04111 -16.90103 -16.45792 -16.18236 -15.56367 -15.07523 -14.80705 -14.48037 -14.40875 -14.09952 -13.98316 -13.91469 -13.51622 -13.30665 -12.97556 -12.89440 -12.65861 -12.24056 -12.09587 -11.57887 -11.45642 -11.44536 -11.09208 -11.04192 -10.83869 -10.75148 -10.63663 -10.57815 -10.17783 -10.12805 -9.84684 -9.73615 -9.71762 -9.62096 -8.67240 -8.58039 -8.20240 -6.94218 -5.77497 -3.12714 -0.15521 0.52745 1.59407 2.24215 2.65335 2.69812 3.13347 3.36629 3.41663 3.43444 3.51368 3.75562 3.90637 4.36588 4.42989 4.65038 4.70117 4.78288 4.88649 5.01978 5.10852 5.17855 5.24993 5.28405 5.39073 5.46672 5.49871 5.53462 5.65968 5.74683 5.82453 5.93488 6.02775 6.07801 6.18628 6.21504 6.24079 6.40212 6.45141 6.60569 6.79148 6.94200 7.15444 7.18210 7.24602 7.49534 7.54994 7.76557 7.89730 8.18321 9.14272 9.73856 10.37657 11.33325 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.024799 B = 0.002822 C = 0.002704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.789077 B = 9920.133445 C =10354.224519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.005 4.005 3 Si 0.913 3.087 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.229 4.229 8 H 0.079 0.921 9 N -0.594 5.594 10 C 0.179 3.821 11 C -0.151 4.151 12 C 0.134 3.866 13 H 0.098 0.902 14 C 0.163 3.837 15 H 0.056 0.944 16 C -0.132 4.132 17 C -0.133 4.133 18 C 0.089 3.911 19 N -0.568 5.568 20 C 0.543 3.457 21 O -0.490 6.490 22 C 0.161 3.839 23 C -0.202 4.202 24 C 0.175 3.825 25 N -0.450 5.450 26 C 0.245 3.755 27 C -0.255 4.255 28 C 0.078 3.922 29 N -0.276 5.276 30 N -0.291 5.291 31 H 0.253 0.747 32 H 0.042 0.958 33 H 0.054 0.946 34 H 0.058 0.942 35 H 0.063 0.937 36 H 0.064 0.936 37 H 0.066 0.934 38 H 0.076 0.924 39 H 0.066 0.934 40 H 0.076 0.924 41 H 0.087 0.913 42 H 0.186 0.814 43 H 0.188 0.812 44 H 0.164 0.836 45 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.560 -21.728 4.866 22.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.202 4.202 3 Si 0.743 3.257 4 H -0.215 1.215 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.357 4.357 8 H 0.097 0.903 9 N -0.319 5.319 10 C 0.054 3.946 11 C -0.190 4.190 12 C 0.031 3.969 13 H 0.116 0.884 14 C 0.054 3.946 15 H 0.074 0.926 16 C -0.172 4.172 17 C -0.172 4.172 18 C -0.033 4.033 19 N -0.301 5.301 20 C 0.327 3.673 21 O -0.363 6.363 22 C 0.041 3.959 23 C -0.226 4.226 24 C -0.010 4.010 25 N -0.161 5.161 26 C 0.019 3.981 27 C -0.285 4.285 28 C -0.101 4.101 29 N -0.099 5.099 30 N -0.064 5.064 31 H 0.064 0.936 32 H 0.061 0.939 33 H 0.072 0.928 34 H 0.076 0.924 35 H 0.082 0.918 36 H 0.083 0.917 37 H 0.085 0.915 38 H 0.094 0.906 39 H 0.085 0.915 40 H 0.094 0.906 41 H 0.105 0.895 42 H 0.203 0.797 43 H 0.205 0.795 44 H 0.182 0.818 45 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 1.374 -20.984 3.770 21.364 hybrid contribution 0.337 0.830 0.173 0.912 sum 1.711 -20.154 3.943 20.608 Atomic orbital electron populations 1.69964 1.04891 1.25178 1.56624 1.24809 0.95719 0.97697 1.01948 0.86110 0.78548 0.83390 0.77629 1.21544 1.21662 1.20677 1.19005 0.90434 0.82035 1.44275 0.90348 1.44495 1.01462 0.99165 1.86742 1.21074 0.84317 0.87719 1.01494 1.23125 0.96149 0.99618 1.00135 1.21327 0.97252 0.77763 1.00598 0.88411 1.20823 0.93864 0.86095 0.93824 0.92565 1.22152 1.01754 0.93288 1.00021 1.21883 0.96717 0.96771 1.01780 1.22298 0.96786 0.99443 0.84797 1.46934 1.60077 1.06223 1.16822 1.17667 0.80549 0.83330 0.85780 1.90914 1.46021 1.81826 1.17547 1.20483 0.97895 0.89484 0.88006 1.22842 1.04854 1.00808 0.94139 1.23423 0.90191 0.87338 1.00085 1.67943 1.13793 1.35651 0.98677 1.20797 1.02254 0.83227 0.91869 1.21031 1.18748 1.00373 0.88393 1.24016 0.95846 0.89672 1.00541 1.78356 1.27280 1.20205 0.84083 1.47161 1.46009 1.05566 1.07700 0.93649 0.93942 0.92801 0.92352 0.91799 0.91723 0.91519 0.90580 0.91523 0.90638 0.89471 0.79722 0.79512 0.81801 0.78347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.29 10.29 55.49 0.57 -25.72 16 2 C -0.01 -0.14 5.49 -17.43 -0.10 -0.24 16 3 Si 0.91 21.60 29.55 -169.99 -5.02 16.58 16 4 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.23 -6.10 10.27 -15.06 -0.15 -6.26 16 8 H 0.08 2.02 7.83 -52.49 -0.41 1.61 16 9 N -0.59 -14.29 2.94 -163.88 -0.48 -14.77 16 10 C 0.18 4.19 5.39 -3.28 -0.02 4.17 16 11 C -0.15 -2.80 6.46 -25.35 -0.16 -2.96 16 12 C 0.13 2.40 2.82 -68.33 -0.19 2.20 16 13 H 0.10 2.00 6.99 -51.93 -0.36 1.63 16 14 C 0.16 3.12 3.27 -67.33 -0.22 2.90 16 15 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 16 C -0.13 -2.08 5.31 -26.80 -0.14 -2.22 16 17 C -0.13 -1.49 6.10 -26.73 -0.16 -1.65 16 18 C 0.09 0.90 4.48 -4.40 -0.02 0.88 16 19 N -0.57 -8.14 2.79 -168.59 -0.47 -8.61 16 20 C 0.54 8.60 7.43 -12.49 -0.09 8.50 16 21 O -0.49 -9.81 15.69 5.29 0.08 -9.73 16 22 C 0.16 2.12 6.25 -81.99 -0.51 1.60 16 23 C -0.20 -1.72 7.45 -39.36 -0.29 -2.01 16 24 C 0.17 1.30 11.26 -17.13 -0.19 1.10 16 25 N -0.45 -4.85 10.44 -12.24 -0.13 -4.98 16 26 C 0.25 3.13 7.93 -155.56 -1.23 1.90 16 27 C -0.25 -2.79 10.91 -39.18 -0.43 -3.22 16 28 C 0.08 0.87 11.94 -17.58 -0.21 0.66 16 29 N -0.28 -4.28 11.99 30.46 0.37 -3.92 16 30 N -0.29 -4.25 3.93 -8.88 -0.03 -4.28 16 31 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 32 H 0.04 1.09 7.60 -51.93 -0.39 0.69 16 33 H 0.05 1.43 7.24 -51.93 -0.38 1.06 16 34 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 36 H 0.06 1.07 8.02 -51.92 -0.42 0.66 16 37 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 38 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.08 0.61 7.10 -51.93 -0.37 0.24 16 41 H 0.09 0.71 4.93 -51.93 -0.26 0.45 16 42 H 0.19 1.06 4.74 -52.48 -0.25 0.81 16 43 H 0.19 0.50 8.06 -52.49 -0.42 0.08 16 44 H 0.16 1.34 8.06 -52.48 -0.42 0.91 16 45 H 0.20 1.38 8.06 -52.49 -0.42 0.96 16 LS Contribution 357.48 15.07 5.39 5.39 Total: -1.00 -34.99 357.48 -9.64 -44.63 By element: Atomic # 1 Polarization: 5.82 SS G_CDS: -5.77 Total: 0.04 kcal Atomic # 6 Polarization: 9.50 SS G_CDS: -4.13 Total: 5.36 kcal Atomic # 7 Polarization: -62.10 SS G_CDS: -0.18 Total: -62.28 kcal Atomic # 8 Polarization: -9.81 SS G_CDS: 0.08 Total: -9.73 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -34.99 -9.64 -44.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049519821.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 192.655 kcal (2) G-P(sol) polarization free energy of solvation -34.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 157.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.628 kcal (6) G-S(sol) free energy of system = (1) + (5) 148.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds