Wall clock time and date at job start Sat Apr 11 2020 06:20:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86797 * 119.99644 * 2 1 4 4 H 1.48494 * 109.47309 * 269.99506 * 3 2 1 5 5 H 1.48497 * 109.47146 * 30.00295 * 3 2 1 6 6 H 1.48506 * 109.46727 * 150.00094 * 3 2 1 7 7 C 1.38811 * 119.99755 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99686 * 179.97438 * 7 2 1 9 9 N 1.36935 * 120.00140 * 0.02562 * 7 2 1 10 10 C 1.46884 * 125.58422 * 359.96835 * 9 7 2 11 11 C 1.54055 * 107.70945 * 177.05121 * 10 9 7 12 12 C 1.54575 * 103.67005 * 342.84860 * 11 10 9 13 13 H 1.08998 * 108.78497 * 273.79741 * 12 11 10 14 14 C 1.47653 * 125.57997 * 180.02562 * 9 7 2 15 15 H 1.08999 * 110.56924 * 322.56133 * 14 9 7 16 16 C 1.52926 * 107.99546 * 83.58400 * 14 9 7 17 17 C 1.52938 * 109.79625 * 171.83969 * 16 14 9 18 18 C 1.53056 * 108.49635 * 294.01415 * 17 16 14 19 19 N 1.44189 * 111.47764 * 153.28484 * 12 11 10 20 20 C 1.34777 * 117.76151 * 93.66226 * 19 12 11 21 21 O 1.21589 * 120.00015 * 6.79719 * 20 19 12 22 22 C 1.47497 * 119.99829 * 186.79075 * 20 19 12 23 23 C 1.36880 * 120.61461 * 27.16887 * 22 20 19 24 24 C 1.40130 * 119.26358 * 179.97438 * 23 22 20 25 25 N 1.31148 * 120.46062 * 0.02562 * 24 23 22 26 26 C 1.33699 * 121.18437 * 359.69510 * 25 24 23 27 27 C 1.39069 * 132.55237 * 179.55212 * 26 25 24 28 28 C 1.38501 * 107.66875 * 180.52250 * 27 26 25 29 29 N 1.31534 * 109.03907 * 0.26598 * 28 27 26 30 30 N 1.37292 * 120.63586 * 0.60312 * 26 25 24 31 31 H 0.97004 * 119.99916 * 0.02562 * 1 2 3 32 32 H 1.09000 * 109.81235 * 296.60042 * 10 9 7 33 33 H 1.09000 * 109.80596 * 57.43514 * 10 9 7 34 34 H 1.09002 * 110.56973 * 101.43050 * 11 10 9 35 35 H 1.08992 * 110.57444 * 224.15773 * 11 10 9 36 36 H 1.09007 * 109.41257 * 51.74302 * 16 14 9 37 37 H 1.08999 * 109.41770 * 291.94159 * 16 14 9 38 38 H 1.08996 * 109.63727 * 174.30772 * 17 16 14 39 39 H 1.09004 * 109.79478 * 53.80980 * 17 16 14 40 40 H 1.08997 * 109.45586 * 293.77003 * 18 17 16 41 41 H 1.08997 * 109.44053 * 173.81617 * 18 17 16 42 42 H 1.08003 * 120.36946 * 359.95839 * 23 22 20 43 43 H 1.07999 * 119.77409 * 179.97438 * 24 23 22 44 44 H 1.08004 * 126.16441 * 0.79254 * 27 26 25 45 45 H 1.07994 * 125.48222 * 180.27923 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4476 2.6526 0.7001 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 -0.1363 -2.5310 0.0007 11 6 -0.4601 -4.0352 -0.0749 12 6 0.8639 -4.6701 -0.5577 13 1 0.8917 -4.6383 -1.6469 14 6 1.9360 -3.7325 0.0016 15 1 2.8326 -3.7465 -0.6181 16 6 2.2782 -4.0948 1.4474 17 6 2.7248 -5.5556 1.5234 18 6 1.5325 -6.4471 1.1683 19 7 0.9840 -6.0384 -0.1193 20 6 0.5650 -7.0058 -0.9590 21 8 0.2205 -6.7219 -2.0900 22 6 0.5245 -8.4089 -0.5060 23 6 0.3600 -8.7091 0.8193 24 6 0.3251 -10.0519 1.2183 25 7 0.4490 -11.0119 0.3334 26 6 0.6050 -10.7395 -0.9662 27 6 0.7635 -11.5506 -2.0847 28 6 0.8943 -10.7240 -3.1883 29 7 0.8293 -9.4703 -2.7955 30 7 0.6519 -9.4404 -1.4081 31 1 -0.4850 0.8401 -0.0004 32 1 -0.5486 -2.1100 0.9177 33 1 -0.5577 -2.0175 -0.8636 34 1 -0.7332 -4.4180 0.9085 35 1 -1.2599 -4.2193 -0.7920 36 1 1.3982 -3.9518 2.0747 37 1 3.0831 -3.4508 1.8016 38 1 3.0638 -5.7828 2.5341 39 1 3.5363 -5.7307 0.8170 40 1 0.7656 -6.3508 1.9368 41 1 1.8601 -7.4850 1.1103 42 1 0.2584 -7.9197 1.5494 43 1 0.1960 -10.2981 2.2619 44 1 0.7773 -12.6305 -2.0921 45 1 1.0280 -11.0553 -4.2074 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049519821.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:14 Heat of formation + Delta-G solvation = 124.361570 kcal Electronic energy + Delta-G solvation = -30323.359195 eV Core-core repulsion = 26344.132325 eV Total energy + Delta-G solvation = -3979.226871 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.50254 -41.94476 -39.64238 -39.04225 -37.13309 -35.25622 -34.16737 -34.04410 -32.27394 -31.01024 -30.34987 -29.70178 -27.48255 -26.34275 -25.55400 -24.56156 -23.56201 -23.19937 -22.10728 -21.48013 -19.78804 -19.25154 -19.12212 -18.91027 -17.86608 -17.43896 -17.16734 -16.81598 -16.53640 -16.13376 -16.05587 -15.40486 -15.26700 -15.04899 -15.00184 -14.81541 -14.25338 -14.18493 -13.94507 -13.83380 -13.74605 -13.57740 -13.15506 -12.86485 -12.67720 -12.46021 -12.41212 -12.32941 -12.09830 -12.04991 -11.92910 -11.76624 -11.58981 -11.46199 -11.24784 -10.80807 -10.71561 -10.52564 -9.84156 -9.05167 -8.92899 -7.85781 -5.22274 -0.97365 -0.20281 0.74603 1.30148 1.45069 1.47307 1.54822 1.58307 1.71814 2.35217 2.47766 2.72093 2.91007 3.18463 3.32206 3.50191 3.71455 3.74442 3.79948 3.91153 3.93549 4.02977 4.06781 4.16144 4.29834 4.36683 4.41795 4.50544 4.53236 4.60266 4.71229 4.76846 4.82007 4.92234 4.97869 5.02212 5.17419 5.31221 5.31803 5.38882 5.45346 5.48663 5.56535 5.62370 5.72826 6.03188 6.17406 6.34732 6.50430 6.74594 7.07888 7.74119 8.37375 9.23935 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.024799 B = 0.002822 C = 0.002704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.789077 B = 9920.133445 C =10354.224519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.064 4.064 3 Si 0.977 3.023 4 H -0.291 1.291 5 H -0.294 1.294 6 H -0.266 1.266 7 C -0.235 4.235 8 H 0.083 0.917 9 N -0.615 5.615 10 C 0.191 3.809 11 C -0.133 4.133 12 C 0.153 3.847 13 H 0.060 0.940 14 C 0.157 3.843 15 H 0.042 0.958 16 C -0.121 4.121 17 C -0.123 4.123 18 C 0.078 3.922 19 N -0.563 5.563 20 C 0.543 3.457 21 O -0.549 6.549 22 C 0.117 3.883 23 C -0.161 4.161 24 C 0.191 3.809 25 N -0.462 5.462 26 C 0.229 3.771 27 C -0.259 4.259 28 C 0.078 3.922 29 N -0.340 5.340 30 N -0.308 5.308 31 H 0.246 0.754 32 H 0.017 0.983 33 H 0.008 0.992 34 H 0.090 0.910 35 H 0.059 0.941 36 H 0.062 0.938 37 H 0.053 0.947 38 H 0.119 0.881 39 H 0.060 0.940 40 H 0.115 0.885 41 H 0.118 0.882 42 H 0.222 0.778 43 H 0.247 0.753 44 H 0.189 0.811 45 H 0.231 0.769 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.493 -24.827 8.513 26.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.257 4.257 3 Si 0.805 3.195 4 H -0.219 1.219 5 H -0.220 1.220 6 H -0.190 1.190 7 C -0.364 4.364 8 H 0.101 0.899 9 N -0.340 5.340 10 C 0.066 3.934 11 C -0.172 4.172 12 C 0.047 3.953 13 H 0.078 0.922 14 C 0.050 3.950 15 H 0.060 0.940 16 C -0.161 4.161 17 C -0.161 4.161 18 C -0.042 4.042 19 N -0.294 5.294 20 C 0.329 3.671 21 O -0.426 6.426 22 C -0.001 4.001 23 C -0.185 4.185 24 C 0.007 3.993 25 N -0.173 5.173 26 C 0.002 3.998 27 C -0.290 4.290 28 C -0.099 4.099 29 N -0.165 5.165 30 N -0.082 5.082 31 H 0.056 0.944 32 H 0.035 0.965 33 H 0.026 0.974 34 H 0.108 0.892 35 H 0.078 0.922 36 H 0.080 0.920 37 H 0.072 0.928 38 H 0.137 0.863 39 H 0.078 0.922 40 H 0.133 0.867 41 H 0.135 0.865 42 H 0.239 0.761 43 H 0.263 0.737 44 H 0.206 0.794 45 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 2.355 -24.137 7.458 25.372 hybrid contribution 0.073 1.716 -0.902 1.940 sum 2.427 -22.420 6.556 23.485 Atomic orbital electron populations 1.70182 1.06267 1.25250 1.58233 1.25619 0.96557 1.00907 1.02629 0.85104 0.77835 0.79305 0.77239 1.21877 1.22048 1.19037 1.19365 0.90914 0.83277 1.42863 0.89919 1.44734 1.01931 1.00506 1.86803 1.20736 0.84105 0.90496 0.98111 1.22913 0.96393 0.96135 1.01788 1.20748 0.96189 0.79885 0.98448 0.92218 1.21028 0.93327 0.84257 0.96366 0.94014 1.21924 1.01253 0.96643 0.96237 1.21861 0.96900 0.93089 1.04242 1.22824 0.97448 1.00645 0.83234 1.46892 1.59919 1.04267 1.18330 1.18123 0.79252 0.84739 0.84997 1.90881 1.48608 1.82945 1.20139 1.20396 1.02421 0.87670 0.89628 1.23422 1.00122 1.02571 0.92355 1.24459 0.86991 0.85991 1.01867 1.68073 1.14516 1.36701 0.98026 1.21288 1.02492 0.82831 0.93171 1.21442 1.18187 1.01451 0.87886 1.24579 0.94484 0.88652 1.02179 1.78245 1.29993 1.22629 0.85641 1.47237 1.47108 1.06369 1.07450 0.94425 0.96497 0.97376 0.89165 0.92178 0.91960 0.92823 0.86279 0.92154 0.86693 0.86464 0.76134 0.73693 0.79362 0.75327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.91 10.29 21.65 0.22 -56.69 16 2 C -0.06 -3.61 5.49 84.86 0.47 -3.15 16 3 Si 0.98 45.51 29.55 68.60 2.03 47.54 16 4 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 5 H -0.29 -13.76 7.11 99.48 0.71 -13.06 16 6 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 7 C -0.24 -12.90 10.27 84.03 0.86 -12.04 16 8 H 0.08 4.33 7.83 -2.91 -0.02 4.31 16 9 N -0.61 -30.69 2.94 -672.40 -1.97 -32.66 16 10 C 0.19 9.41 5.39 86.66 0.47 9.87 16 11 C -0.13 -5.00 6.46 31.49 0.20 -4.80 16 12 C 0.15 5.55 2.82 45.96 0.13 5.68 16 13 H 0.06 2.63 6.99 -2.39 -0.02 2.61 16 14 C 0.16 6.13 3.27 44.75 0.15 6.27 16 15 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 16 C -0.12 -3.57 5.31 30.55 0.16 -3.41 16 17 C -0.12 -2.21 6.10 30.59 0.19 -2.03 16 18 C 0.08 1.19 4.48 86.53 0.39 1.58 16 19 N -0.56 -15.22 2.79 -805.54 -2.25 -17.47 16 20 C 0.54 17.02 7.43 86.68 0.64 17.67 16 21 O -0.55 -23.24 15.69 -4.00 -0.06 -23.30 16 22 C 0.12 2.83 6.25 40.36 0.25 3.09 16 23 C -0.16 -1.88 7.45 22.41 0.17 -1.72 16 24 C 0.19 1.68 11.26 85.25 0.96 2.64 16 25 N -0.46 -8.14 10.44 -192.62 -2.01 -10.15 16 26 C 0.23 5.42 7.93 133.23 1.06 6.47 16 27 C -0.26 -5.36 10.91 22.53 0.25 -5.11 16 28 C 0.08 1.76 11.94 84.80 1.01 2.77 16 29 N -0.34 -10.91 11.99 -57.55 -0.69 -11.60 16 30 N -0.31 -8.78 3.93 -181.99 -0.72 -9.49 16 31 H 0.25 14.42 8.31 -92.71 -0.77 13.65 16 32 H 0.02 0.90 7.60 -2.39 -0.02 0.89 16 33 H 0.01 0.46 7.24 -2.39 -0.02 0.44 16 34 H 0.09 2.81 8.14 -2.39 -0.02 2.79 16 35 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 36 H 0.06 1.89 8.02 -2.38 -0.02 1.88 16 37 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 38 H 0.12 1.29 8.14 -2.39 -0.02 1.27 16 39 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 40 H 0.12 0.98 7.10 -2.39 -0.02 0.96 16 41 H 0.12 1.17 4.93 -2.39 -0.01 1.16 16 42 H 0.22 0.85 4.74 -2.91 -0.01 0.84 16 43 H 0.25 -0.80 8.06 -2.91 -0.02 -0.82 16 44 H 0.19 2.68 8.06 -2.91 -0.02 2.65 16 45 H 0.23 3.09 8.06 -2.91 -0.02 3.06 16 Total: -1.00 -87.21 357.48 2.92 -84.29 By element: Atomic # 1 Polarization: 4.71 SS G_CDS: 1.03 Total: 5.74 kcal Atomic # 6 Polarization: 16.45 SS G_CDS: 7.35 Total: 23.80 kcal Atomic # 7 Polarization: -130.65 SS G_CDS: -7.42 Total: -138.06 kcal Atomic # 8 Polarization: -23.24 SS G_CDS: -0.06 Total: -23.30 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.54 kcal Total: -87.21 2.92 -84.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049519821.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 208.652 kcal (2) G-P(sol) polarization free energy of solvation -87.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.290 kcal (6) G-S(sol) free energy of system = (1) + (5) 124.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds