Wall clock time and date at job start Sat Apr 11 2020 06:20:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86797 * 119.99748 * 2 1 4 4 H 1.48499 * 109.47207 * 274.98348 * 3 2 1 5 5 H 1.48496 * 109.47167 * 34.98786 * 3 2 1 6 6 H 1.48501 * 109.46772 * 154.99035 * 3 2 1 7 7 C 1.38808 * 120.00047 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00242 * 174.32267 * 7 2 1 9 9 N 1.36941 * 120.00077 * 354.32157 * 7 2 1 10 10 C 1.48383 * 126.55979 * 7.00951 * 9 7 2 11 11 C 1.56627 * 107.26094 * 173.96761 * 10 9 7 12 12 C 1.53431 * 101.18969 * 338.30562 * 11 10 9 13 13 H 1.09000 * 111.14376 * 280.90092 * 12 11 10 14 14 C 1.45023 * 126.56237 * 187.01273 * 9 7 2 15 15 H 1.09001 * 108.26501 * 96.08065 * 14 9 7 16 16 C 1.51087 * 119.18758 * 331.20879 * 14 9 7 17 17 C 1.53870 * 107.40844 * 176.16101 * 16 14 9 18 18 C 1.52716 * 111.52571 * 56.88593 * 17 16 14 19 19 N 1.45720 * 116.37777 * 152.43608 * 12 11 10 20 20 C 1.34775 * 122.22875 * 9.04005 * 19 12 11 21 21 O 1.21684 * 119.99859 * 355.18288 * 20 19 12 22 22 C 1.46812 * 120.00112 * 175.18554 * 20 19 12 23 23 C 1.40416 * 126.53677 * 325.44483 * 22 20 19 24 24 N 1.30977 * 108.76208 * 180.02562 * 23 22 20 25 25 N 1.39714 * 109.48834 * 359.97438 * 24 23 22 26 26 C 1.36362 * 133.19223 * 180.02562 * 25 24 23 27 27 C 1.35295 * 119.80452 * 179.97438 * 26 25 24 28 28 N 1.33241 * 121.27564 * 0.02562 * 27 26 25 29 29 C 1.31414 * 121.08031 * 359.97438 * 28 27 26 30 30 C 1.36816 * 107.96933 * 359.73122 * 25 24 23 31 31 H 0.96995 * 120.00263 * 0.02562 * 1 2 3 32 32 H 1.08998 * 109.96116 * 293.85747 * 10 9 7 33 33 H 1.08994 * 109.95972 * 55.06712 * 10 9 7 34 34 H 1.08998 * 111.47141 * 220.25828 * 11 10 9 35 35 H 1.08996 * 110.95315 * 96.12399 * 11 10 9 36 36 H 1.09003 * 109.88181 * 56.66347 * 16 14 9 37 37 H 1.08996 * 109.88038 * 295.65869 * 16 14 9 38 38 H 1.09000 * 109.06933 * 177.41403 * 17 16 14 39 39 H 1.09004 * 109.06865 * 296.43014 * 17 16 14 40 40 H 1.08998 * 109.15882 * 71.87724 * 18 17 16 41 41 H 1.09003 * 109.16088 * 191.11645 * 18 17 16 42 42 H 1.07998 * 125.62401 * 0.02562 * 23 22 20 43 43 H 1.07993 * 120.09167 * 359.97438 * 26 25 24 44 44 H 1.08000 * 119.35845 * 180.02562 * 27 26 25 45 45 H 1.07995 * 120.18154 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3923 2.1073 -1.3948 5 1 1.5042 2.6199 0.8028 6 1 3.5964 1.4120 0.5919 7 6 2.0102 -1.2021 -0.0005 8 1 3.0863 -1.2044 -0.0931 9 7 1.3306 -2.3852 0.1163 10 6 -0.1425 -2.5631 0.1057 11 6 -0.4247 -4.1037 0.1120 12 6 0.9017 -4.6515 -0.4310 13 1 0.9540 -4.5514 -1.5151 14 6 1.9128 -3.7040 0.2740 15 1 1.9285 -3.9456 1.3368 16 6 3.2801 -3.9801 -0.3066 17 6 3.6714 -5.4122 0.0979 18 6 2.6338 -6.4301 -0.3706 19 7 1.2661 -5.9985 -0.0111 20 6 0.4132 -6.7978 0.6597 21 8 -0.6711 -6.3716 1.0111 22 6 0.7922 -8.1825 0.9666 23 6 1.5702 -9.0334 0.1652 24 7 1.6925 -10.1879 0.7715 25 7 1.0075 -10.1500 1.9887 26 6 0.8213 -11.0636 2.9837 27 6 0.0909 -10.7318 4.0732 28 7 -0.4557 -9.5231 4.1977 29 6 -0.3033 -8.6103 3.2647 30 6 0.4510 -8.9072 2.1212 31 1 -0.4850 0.8400 -0.0004 32 1 -0.5800 -2.0959 0.9880 33 1 -0.5642 -2.1211 -0.7969 34 1 -1.2528 -4.3603 -0.5486 35 1 -0.6096 -4.4619 1.1247 36 1 4.0036 -3.2706 0.0951 37 1 3.2448 -3.8983 -1.3929 38 1 4.6361 -5.6567 -0.3466 39 1 3.7559 -5.4651 1.1834 40 1 2.7020 -6.5381 -1.4531 41 1 2.8393 -7.3923 0.0985 42 1 1.9974 -8.7781 -0.7933 43 1 1.2555 -12.0490 2.9022 44 1 -0.0516 -11.4609 4.8572 45 1 -0.7525 -7.6351 3.3808 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049523403.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:21 Heat of formation + Delta-G solvation = 138.481191 kcal Electronic energy + Delta-G solvation = -30245.374318 eV Core-core repulsion = 26266.759720 eV Total energy + Delta-G solvation = -3978.614598 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.82861 -40.23081 -38.66269 -37.55438 -35.41802 -33.95967 -32.60378 -32.16756 -31.68764 -29.92441 -28.66423 -28.16065 -25.31245 -25.03971 -24.48357 -23.67995 -22.49802 -21.43454 -20.86391 -19.76090 -19.29457 -18.21635 -17.75402 -16.74197 -16.44690 -16.40212 -15.79591 -15.47724 -15.19881 -15.02788 -14.58511 -14.35629 -14.30425 -13.76182 -13.66156 -13.35179 -13.31918 -13.13336 -12.90011 -12.40953 -12.22821 -11.82766 -11.60950 -11.53094 -11.27974 -11.04098 -10.82101 -10.69018 -10.51813 -10.43625 -10.34048 -10.16487 -10.07807 -9.96342 -9.80615 -9.57690 -9.03049 -8.53362 -8.29757 -8.11442 -6.78049 -5.68569 -3.01786 0.05113 0.47998 1.55638 1.86453 2.87422 3.05176 3.37891 3.41781 3.47316 3.49444 3.70665 3.83258 3.90223 4.40240 4.51956 4.57199 4.67777 4.82134 4.88124 5.02903 5.08214 5.12764 5.30392 5.39856 5.45340 5.59573 5.64308 5.75547 5.78853 5.85197 5.88269 6.01438 6.07936 6.11539 6.26202 6.31768 6.42269 6.58433 6.75024 6.80433 6.90730 6.94409 7.22902 7.23789 7.61688 7.67813 7.73835 7.87247 8.28246 8.43258 9.22254 9.86226 10.55242 11.44161 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.021300 B = 0.002916 C = 0.002750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.253668 B = 9599.124357 C =10179.475790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.006 4.006 3 Si 0.908 3.092 4 H -0.290 1.290 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.227 4.227 8 H 0.078 0.922 9 N -0.593 5.593 10 C 0.174 3.826 11 C -0.135 4.135 12 C 0.118 3.882 13 H 0.079 0.921 14 C 0.159 3.841 15 H 0.019 0.981 16 C -0.116 4.116 17 C -0.129 4.129 18 C 0.103 3.897 19 N -0.592 5.592 20 C 0.596 3.404 21 O -0.530 6.530 22 C -0.259 4.259 23 C 0.108 3.892 24 N -0.304 5.304 25 N -0.250 5.250 26 C 0.062 3.938 27 C 0.027 3.973 28 N -0.446 5.446 29 C 0.172 3.828 30 C 0.087 3.913 31 H 0.252 0.748 32 H 0.044 0.956 33 H 0.048 0.952 34 H 0.060 0.940 35 H 0.089 0.911 36 H 0.067 0.933 37 H 0.063 0.937 38 H 0.072 0.928 39 H 0.062 0.938 40 H 0.068 0.932 41 H 0.081 0.919 42 H 0.206 0.794 43 H 0.181 0.819 44 H 0.186 0.814 45 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.387 -23.347 2.862 23.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.203 4.203 3 Si 0.739 3.261 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.355 4.355 8 H 0.096 0.904 9 N -0.317 5.317 10 C 0.049 3.951 11 C -0.173 4.173 12 C 0.014 3.986 13 H 0.097 0.903 14 C 0.050 3.950 15 H 0.036 0.964 16 C -0.155 4.155 17 C -0.167 4.167 18 C -0.020 4.020 19 N -0.324 5.324 20 C 0.384 3.616 21 O -0.408 6.408 22 C -0.277 4.277 23 C -0.070 4.070 24 N -0.128 5.128 25 N -0.018 5.018 26 C -0.067 4.067 27 C -0.115 4.115 28 N -0.157 5.157 29 C -0.008 4.008 30 C -0.036 4.036 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.066 0.934 34 H 0.079 0.921 35 H 0.108 0.892 36 H 0.086 0.914 37 H 0.082 0.918 38 H 0.091 0.909 39 H 0.081 0.919 40 H 0.087 0.913 41 H 0.099 0.901 42 H 0.223 0.777 43 H 0.198 0.802 44 H 0.203 0.797 45 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges 3.863 -24.081 3.691 24.666 hybrid contribution 0.822 1.340 -0.865 1.794 sum 4.686 -22.741 2.826 23.390 Atomic orbital electron populations 1.69955 1.04899 1.25059 1.56536 1.24816 0.95648 0.97594 1.02202 0.86164 0.78706 0.83862 0.77410 1.21747 1.21678 1.20689 1.18973 0.90750 0.82286 1.43500 0.90405 1.44070 1.01790 1.00242 1.85632 1.21917 0.83607 0.88474 1.01091 1.23255 0.94088 0.97477 1.02527 1.22438 0.98825 0.79054 0.98267 0.90265 1.20741 0.91292 0.86829 0.96157 0.96414 1.21432 0.98558 0.94487 1.00979 1.21889 0.97654 0.95530 1.01665 1.21966 0.81650 0.98228 1.00145 1.47772 1.13127 1.15478 1.56030 1.16859 0.83907 0.82924 0.77886 1.90798 1.22429 1.74589 1.52974 1.19973 1.12811 0.97941 0.97023 1.24333 0.93845 0.89267 0.99531 1.77675 1.20516 1.22464 0.92131 1.46171 1.32061 1.09364 1.14161 1.22629 1.01117 0.95926 0.87038 1.22446 0.96773 0.95318 0.96944 1.68279 1.18233 1.01272 1.27890 1.23284 0.92034 1.00073 0.85366 1.20355 0.98582 0.86604 0.98038 0.93735 0.93735 0.93382 0.92106 0.89241 0.91445 0.91785 0.90906 0.91871 0.91338 0.90109 0.77734 0.80195 0.79733 0.78934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.08 10.51 55.49 0.58 -26.50 16 2 C -0.01 -0.17 5.49 -17.43 -0.10 -0.26 16 3 Si 0.91 22.02 29.56 -169.99 -5.02 17.00 16 4 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.23 -6.21 9.95 -15.06 -0.15 -6.36 16 8 H 0.08 2.04 7.28 -52.49 -0.38 1.66 16 9 N -0.59 -15.01 3.35 -162.55 -0.54 -15.55 16 10 C 0.17 4.33 5.48 -1.05 -0.01 4.32 16 11 C -0.14 -2.79 5.23 -24.55 -0.13 -2.92 16 12 C 0.12 2.17 3.28 -66.81 -0.22 1.95 16 13 H 0.08 1.46 8.14 -51.93 -0.42 1.03 16 14 C 0.16 3.25 2.59 -68.37 -0.18 3.07 16 15 H 0.02 0.41 8.06 -51.93 -0.42 -0.01 16 16 C -0.12 -1.92 5.42 -27.24 -0.15 -2.07 16 17 C -0.13 -1.58 5.93 -26.42 -0.16 -1.74 16 18 C 0.10 1.16 5.33 -3.45 -0.02 1.14 16 19 N -0.59 -8.88 2.91 -165.49 -0.48 -9.36 16 20 C 0.60 9.28 7.61 -12.79 -0.10 9.18 16 21 O -0.53 -9.80 13.54 5.20 0.07 -9.73 16 22 C -0.26 -3.33 5.49 -104.75 -0.57 -3.91 16 23 C 0.11 1.13 9.58 -17.10 -0.16 0.97 16 24 N -0.30 -3.40 12.60 30.76 0.39 -3.01 16 25 N -0.25 -2.70 3.91 -10.50 -0.04 -2.74 16 26 C 0.06 0.45 11.25 -16.59 -0.19 0.27 16 27 C 0.03 0.19 11.07 -17.99 -0.20 -0.01 16 28 N -0.45 -4.64 10.44 -13.26 -0.14 -4.78 16 29 C 0.17 1.99 11.22 -17.01 -0.19 1.80 16 30 C 0.09 1.07 6.77 -84.06 -0.57 0.50 16 31 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 32 H 0.04 1.23 7.62 -51.93 -0.40 0.83 16 33 H 0.05 1.30 7.44 -51.93 -0.39 0.92 16 34 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 35 H 0.09 1.93 5.98 -51.93 -0.31 1.62 16 36 H 0.07 1.18 7.72 -51.93 -0.40 0.78 16 37 H 0.06 1.05 8.12 -51.93 -0.42 0.63 16 38 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 40 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.08 0.76 4.60 -51.93 -0.24 0.52 16 42 H 0.21 1.50 6.84 -52.49 -0.36 1.14 16 43 H 0.18 0.67 8.06 -52.49 -0.42 0.25 16 44 H 0.19 0.61 8.06 -52.49 -0.42 0.19 16 45 H 0.19 2.21 7.92 -52.49 -0.42 1.79 16 LS Contribution 356.55 15.07 5.37 5.37 Total: -1.00 -34.28 356.55 -8.72 -43.00 By element: Atomic # 1 Polarization: 6.19 SS G_CDS: -5.82 Total: 0.37 kcal Atomic # 6 Polarization: 9.02 SS G_CDS: -3.08 Total: 5.94 kcal Atomic # 7 Polarization: -61.71 SS G_CDS: -0.24 Total: -61.94 kcal Atomic # 8 Polarization: -9.80 SS G_CDS: 0.07 Total: -9.73 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -34.28 -8.72 -43.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049523403.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 181.477 kcal (2) G-P(sol) polarization free energy of solvation -34.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 147.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.996 kcal (6) G-S(sol) free energy of system = (1) + (5) 138.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds