Wall clock time and date at job start Sat Apr 11 2020 06:20:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86797 * 119.99748 * 2 1 4 4 H 1.48499 * 109.47207 * 274.98348 * 3 2 1 5 5 H 1.48496 * 109.47167 * 34.98786 * 3 2 1 6 6 H 1.48501 * 109.46772 * 154.99035 * 3 2 1 7 7 C 1.38808 * 120.00047 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00242 * 174.32267 * 7 2 1 9 9 N 1.36941 * 120.00077 * 354.32157 * 7 2 1 10 10 C 1.48383 * 126.55979 * 7.00951 * 9 7 2 11 11 C 1.56627 * 107.26094 * 173.96761 * 10 9 7 12 12 C 1.53431 * 101.18969 * 338.30562 * 11 10 9 13 13 H 1.09000 * 111.14376 * 280.90092 * 12 11 10 14 14 C 1.45023 * 126.56237 * 187.01273 * 9 7 2 15 15 H 1.09001 * 108.26501 * 96.08065 * 14 9 7 16 16 C 1.51087 * 119.18758 * 331.20879 * 14 9 7 17 17 C 1.53870 * 107.40844 * 176.16101 * 16 14 9 18 18 C 1.52716 * 111.52571 * 56.88593 * 17 16 14 19 19 N 1.45720 * 116.37777 * 152.43608 * 12 11 10 20 20 C 1.34775 * 122.22875 * 9.04005 * 19 12 11 21 21 O 1.21684 * 119.99859 * 355.18288 * 20 19 12 22 22 C 1.46812 * 120.00112 * 175.18554 * 20 19 12 23 23 C 1.40416 * 126.53677 * 325.44483 * 22 20 19 24 24 N 1.30977 * 108.76208 * 180.02562 * 23 22 20 25 25 N 1.39714 * 109.48834 * 359.97438 * 24 23 22 26 26 C 1.36362 * 133.19223 * 180.02562 * 25 24 23 27 27 C 1.35295 * 119.80452 * 179.97438 * 26 25 24 28 28 N 1.33241 * 121.27564 * 0.02562 * 27 26 25 29 29 C 1.31414 * 121.08031 * 359.97438 * 28 27 26 30 30 C 1.36816 * 107.96933 * 359.73122 * 25 24 23 31 31 H 0.96995 * 120.00263 * 0.02562 * 1 2 3 32 32 H 1.08998 * 109.96116 * 293.85747 * 10 9 7 33 33 H 1.08994 * 109.95972 * 55.06712 * 10 9 7 34 34 H 1.08998 * 111.47141 * 220.25828 * 11 10 9 35 35 H 1.08996 * 110.95315 * 96.12399 * 11 10 9 36 36 H 1.09003 * 109.88181 * 56.66347 * 16 14 9 37 37 H 1.08996 * 109.88038 * 295.65869 * 16 14 9 38 38 H 1.09000 * 109.06933 * 177.41403 * 17 16 14 39 39 H 1.09004 * 109.06865 * 296.43014 * 17 16 14 40 40 H 1.08998 * 109.15882 * 71.87724 * 18 17 16 41 41 H 1.09003 * 109.16088 * 191.11645 * 18 17 16 42 42 H 1.07998 * 125.62401 * 0.02562 * 23 22 20 43 43 H 1.07993 * 120.09167 * 359.97438 * 26 25 24 44 44 H 1.08000 * 119.35845 * 180.02562 * 27 26 25 45 45 H 1.07995 * 120.18154 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3923 2.1073 -1.3948 5 1 1.5042 2.6199 0.8028 6 1 3.5964 1.4120 0.5919 7 6 2.0102 -1.2021 -0.0005 8 1 3.0863 -1.2044 -0.0931 9 7 1.3306 -2.3852 0.1163 10 6 -0.1425 -2.5631 0.1057 11 6 -0.4247 -4.1037 0.1120 12 6 0.9017 -4.6515 -0.4310 13 1 0.9540 -4.5514 -1.5151 14 6 1.9128 -3.7040 0.2740 15 1 1.9285 -3.9456 1.3368 16 6 3.2801 -3.9801 -0.3066 17 6 3.6714 -5.4122 0.0979 18 6 2.6338 -6.4301 -0.3706 19 7 1.2661 -5.9985 -0.0111 20 6 0.4132 -6.7978 0.6597 21 8 -0.6711 -6.3716 1.0111 22 6 0.7922 -8.1825 0.9666 23 6 1.5702 -9.0334 0.1652 24 7 1.6925 -10.1879 0.7715 25 7 1.0075 -10.1500 1.9887 26 6 0.8213 -11.0636 2.9837 27 6 0.0909 -10.7318 4.0732 28 7 -0.4557 -9.5231 4.1977 29 6 -0.3033 -8.6103 3.2647 30 6 0.4510 -8.9072 2.1212 31 1 -0.4850 0.8400 -0.0004 32 1 -0.5800 -2.0959 0.9880 33 1 -0.5642 -2.1211 -0.7969 34 1 -1.2528 -4.3603 -0.5486 35 1 -0.6096 -4.4619 1.1247 36 1 4.0036 -3.2706 0.0951 37 1 3.2448 -3.8983 -1.3929 38 1 4.6361 -5.6567 -0.3466 39 1 3.7559 -5.4651 1.1834 40 1 2.7020 -6.5381 -1.4531 41 1 2.8393 -7.3923 0.0985 42 1 1.9974 -8.7781 -0.7933 43 1 1.2555 -12.0490 2.9022 44 1 -0.0516 -11.4609 4.8572 45 1 -0.7525 -7.6351 3.3808 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049523403.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:21 Heat of formation + Delta-G solvation = 115.156655 kcal Electronic energy + Delta-G solvation = -30246.385746 eV Core-core repulsion = 26266.759720 eV Total energy + Delta-G solvation = -3979.626026 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.62515 -41.53624 -39.54411 -38.90492 -36.89283 -34.84015 -34.15666 -33.79467 -32.47314 -31.25052 -30.12478 -29.56534 -26.59306 -26.26534 -25.84577 -24.70409 -23.46796 -22.73306 -22.38144 -21.40872 -20.42945 -19.20291 -18.56120 -18.37421 -17.52029 -17.29669 -17.04268 -16.68884 -16.45167 -16.21446 -15.94324 -15.72694 -15.44656 -15.28219 -14.94409 -14.44038 -14.19064 -14.17061 -14.06636 -13.98641 -13.78535 -13.33580 -13.14464 -12.89706 -12.68453 -12.48500 -12.21789 -12.11472 -12.04611 -11.81995 -11.74126 -11.65851 -11.51512 -11.39892 -11.08981 -10.94373 -10.74036 -10.35882 -9.55027 -8.96667 -8.85627 -7.83390 -5.19039 -0.71192 -0.29153 0.82755 0.99671 1.46540 1.48903 1.57816 1.85540 2.09442 2.39761 2.51851 2.90680 3.11677 3.24286 3.36141 3.41503 3.65913 3.71798 3.95001 3.98446 4.01467 4.07746 4.12393 4.24165 4.28607 4.35740 4.37730 4.48377 4.61200 4.62585 4.68447 4.79970 4.96070 5.00903 5.03131 5.09151 5.14591 5.19644 5.32158 5.36739 5.47296 5.52011 5.63315 5.67455 5.77360 6.12422 6.20752 6.50134 6.54207 7.07791 7.24439 7.78071 8.48925 9.29245 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.021300 B = 0.002916 C = 0.002750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.253668 B = 9599.124357 C =10179.475790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C -0.069 4.069 3 Si 0.977 3.023 4 H -0.285 1.285 5 H -0.298 1.298 6 H -0.266 1.266 7 C -0.232 4.232 8 H 0.089 0.911 9 N -0.612 5.612 10 C 0.184 3.816 11 C -0.118 4.118 12 C 0.136 3.864 13 H 0.086 0.914 14 C 0.153 3.847 15 H -0.005 1.005 16 C -0.111 4.111 17 C -0.120 4.120 18 C 0.099 3.901 19 N -0.592 5.592 20 C 0.595 3.405 21 O -0.573 6.573 22 C -0.289 4.289 23 C 0.125 3.875 24 N -0.315 5.315 25 N -0.251 5.251 26 C 0.073 3.927 27 C 0.027 3.973 28 N -0.452 5.452 29 C 0.141 3.859 30 C 0.080 3.920 31 H 0.246 0.754 32 H 0.003 0.997 33 H 0.018 0.982 34 H 0.066 0.934 35 H 0.078 0.922 36 H 0.054 0.946 37 H 0.069 0.931 38 H 0.113 0.887 39 H 0.053 0.947 40 H 0.101 0.899 41 H 0.106 0.894 42 H 0.238 0.762 43 H 0.225 0.775 44 H 0.229 0.771 45 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.278 -27.139 2.410 28.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.602 5.602 2 C -0.262 4.262 3 Si 0.805 3.195 4 H -0.212 1.212 5 H -0.225 1.225 6 H -0.191 1.191 7 C -0.361 4.361 8 H 0.107 0.893 9 N -0.336 5.336 10 C 0.059 3.941 11 C -0.157 4.157 12 C 0.030 3.970 13 H 0.104 0.896 14 C 0.045 3.955 15 H 0.012 0.988 16 C -0.149 4.149 17 C -0.158 4.158 18 C -0.022 4.022 19 N -0.324 5.324 20 C 0.385 3.615 21 O -0.453 6.453 22 C -0.307 4.307 23 C -0.053 4.053 24 N -0.138 5.138 25 N -0.018 5.018 26 C -0.055 4.055 27 C -0.115 4.115 28 N -0.163 5.163 29 C -0.037 4.037 30 C -0.043 4.043 31 H 0.055 0.945 32 H 0.021 0.979 33 H 0.036 0.964 34 H 0.085 0.915 35 H 0.096 0.904 36 H 0.073 0.927 37 H 0.088 0.912 38 H 0.131 0.869 39 H 0.072 0.928 40 H 0.119 0.881 41 H 0.124 0.876 42 H 0.254 0.746 43 H 0.241 0.759 44 H 0.245 0.755 45 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 6.813 -27.907 3.223 28.906 hybrid contribution -0.102 2.323 -0.553 2.390 sum 6.711 -25.583 2.670 26.583 Atomic orbital electron populations 1.70186 1.06528 1.25252 1.58246 1.25706 0.96514 1.01158 1.02814 0.85080 0.77823 0.79255 0.77305 1.21204 1.22526 1.19066 1.19408 0.91448 0.83215 1.42026 0.89303 1.44329 1.02066 1.01861 1.85394 1.21613 0.83855 0.91055 0.97617 1.22990 0.96060 0.94314 1.02324 1.22015 0.96005 0.80850 0.98091 0.89572 1.20930 0.94401 0.84857 0.95349 0.98791 1.21405 0.95300 0.97313 1.00923 1.21873 0.99817 0.92640 1.01478 1.22311 0.78821 0.98724 1.02381 1.47797 1.14821 1.13788 1.55978 1.17243 0.83297 0.84009 0.76917 1.90766 1.24309 1.75703 1.54551 1.19625 1.15679 0.96804 0.98632 1.24752 0.92366 0.88194 0.99958 1.77664 1.21119 1.22686 0.92332 1.46487 1.31417 1.09254 1.14637 1.23507 0.99633 0.96793 0.85606 1.23230 0.95641 0.94642 0.98014 1.68248 1.18095 1.02389 1.27587 1.23046 0.93904 1.00352 0.86382 1.20381 0.98525 0.87429 0.97976 0.94502 0.97907 0.96363 0.91546 0.90369 0.92717 0.91187 0.86890 0.92772 0.88136 0.87565 0.74630 0.75882 0.75458 0.80525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.35 10.51 21.65 0.23 -59.13 16 2 C -0.07 -4.02 5.49 84.86 0.47 -3.55 16 3 Si 0.98 46.41 29.56 68.60 2.03 48.44 16 4 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 5 H -0.30 -14.44 7.11 99.48 0.71 -13.73 16 6 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 7 C -0.23 -13.06 9.95 84.03 0.84 -12.23 16 8 H 0.09 4.68 7.28 -2.91 -0.02 4.66 16 9 N -0.61 -32.36 3.35 -668.20 -2.24 -34.60 16 10 C 0.18 9.87 5.48 87.28 0.48 10.35 16 11 C -0.12 -5.20 5.23 32.01 0.17 -5.03 16 12 C 0.14 5.02 3.28 46.13 0.15 5.17 16 13 H 0.09 3.11 8.14 -2.39 -0.02 3.09 16 14 C 0.15 6.37 2.59 45.50 0.12 6.49 16 15 H -0.01 -0.25 8.06 -2.39 -0.02 -0.27 16 16 C -0.11 -3.53 5.42 30.26 0.16 -3.37 16 17 C -0.12 -2.56 5.93 30.79 0.18 -2.38 16 18 C 0.10 1.87 5.33 86.03 0.46 2.33 16 19 N -0.59 -17.18 2.91 -795.71 -2.32 -19.50 16 20 C 0.60 18.59 7.61 86.49 0.66 19.25 16 21 O -0.57 -22.27 13.54 -4.30 -0.06 -22.33 16 22 C -0.29 -7.11 5.49 -19.95 -0.11 -7.22 16 23 C 0.13 2.23 9.58 85.35 0.82 3.05 16 24 N -0.31 -5.97 12.60 -56.59 -0.71 -6.68 16 25 N -0.25 -4.73 3.91 -187.15 -0.73 -5.46 16 26 C 0.07 0.79 11.25 83.31 0.94 1.73 16 27 C 0.03 0.30 11.07 83.80 0.93 1.23 16 28 N -0.45 -8.89 10.44 -195.86 -2.05 -10.94 16 29 C 0.14 3.33 11.22 85.22 0.96 4.29 16 30 C 0.08 1.90 6.77 39.39 0.27 2.17 16 31 H 0.25 14.90 8.31 -92.71 -0.77 14.13 16 32 H 0.00 0.16 7.62 -2.39 -0.02 0.14 16 33 H 0.02 1.06 7.44 -2.39 -0.02 1.04 16 34 H 0.07 2.80 8.14 -2.39 -0.02 2.78 16 35 H 0.08 3.64 5.98 -2.39 -0.01 3.62 16 36 H 0.05 1.87 7.72 -2.39 -0.02 1.85 16 37 H 0.07 2.15 8.12 -2.39 -0.02 2.13 16 38 H 0.11 1.62 8.14 -2.39 -0.02 1.60 16 39 H 0.05 1.28 8.14 -2.38 -0.02 1.26 16 40 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 41 H 0.11 1.55 4.60 -2.39 -0.01 1.54 16 42 H 0.24 2.35 6.84 -2.91 -0.02 2.33 16 43 H 0.22 0.37 8.06 -2.91 -0.02 0.35 16 44 H 0.23 0.39 8.06 -2.91 -0.02 0.36 16 45 H 0.18 4.55 7.92 -2.91 -0.02 4.53 16 Total: -1.00 -81.47 356.55 2.65 -78.82 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: 1.02 Total: 9.12 kcal Atomic # 6 Polarization: 14.79 SS G_CDS: 7.48 Total: 22.26 kcal Atomic # 7 Polarization: -128.49 SS G_CDS: -7.82 Total: -136.31 kcal Atomic # 8 Polarization: -22.27 SS G_CDS: -0.06 Total: -22.33 kcal Atomic # 14 Polarization: 46.41 SS G_CDS: 2.03 Total: 48.44 kcal Total: -81.47 2.65 -78.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049523403.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 193.976 kcal (2) G-P(sol) polarization free energy of solvation -81.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.819 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds