Wall clock time and date at job start Sat Apr 11 2020 06:20:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86802 * 119.99799 * 2 1 4 4 H 1.48504 * 109.47098 * 270.00266 * 3 2 1 5 5 H 1.48493 * 109.47096 * 30.00310 * 3 2 1 6 6 H 1.48501 * 109.47058 * 150.00382 * 3 2 1 7 7 C 1.38810 * 120.00131 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00180 * 179.97438 * 7 2 1 9 9 N 1.36937 * 119.99960 * 359.97438 * 7 2 1 10 10 C 1.48387 * 126.56120 * 359.97438 * 9 7 2 11 11 C 1.55474 * 106.97160 * 185.54486 * 10 9 7 12 12 C 1.53427 * 101.67350 * 22.60678 * 11 10 9 13 13 H 1.08993 * 111.15092 * 77.97802 * 12 11 10 14 14 C 1.45027 * 126.56047 * 180.02562 * 9 7 2 15 15 H 1.08998 * 108.70418 * 263.47006 * 14 9 7 16 16 C 1.51079 * 119.19656 * 28.75591 * 14 9 7 17 17 C 1.53867 * 107.34275 * 183.88565 * 16 14 9 18 18 C 1.52718 * 111.52318 * 303.06572 * 17 16 14 19 19 N 1.45722 * 116.37218 * 207.26744 * 12 11 10 20 20 C 1.34773 * 122.22781 * 350.12146 * 19 12 11 21 21 O 1.21689 * 120.00289 * 355.08873 * 20 19 12 22 22 C 1.46818 * 120.00029 * 175.09246 * 20 19 12 23 23 C 1.40411 * 126.54266 * 47.37437 * 22 20 19 24 24 N 1.30969 * 108.76671 * 179.97438 * 23 22 20 25 25 N 1.39722 * 109.48788 * 359.97438 * 24 23 22 26 26 C 1.36354 * 133.19313 * 180.02562 * 25 24 23 27 27 C 1.35298 * 119.80304 * 179.31569 * 26 25 24 28 28 N 1.33248 * 121.27342 * 0.56804 * 27 26 25 29 29 C 1.31403 * 121.07999 * 359.63979 * 28 27 26 30 30 C 1.36823 * 107.96441 * 359.76582 * 25 24 23 31 31 H 0.96997 * 119.99965 * 359.97438 * 1 2 3 32 32 H 1.08996 * 109.96099 * 304.93042 * 10 9 7 33 33 H 1.08999 * 109.95442 * 66.13513 * 10 9 7 34 34 H 1.09004 * 110.98308 * 140.70243 * 11 10 9 35 35 H 1.08995 * 110.98714 * 264.50523 * 11 10 9 36 36 H 1.08994 * 109.88345 * 303.34948 * 16 14 9 37 37 H 1.09008 * 109.87887 * 64.42622 * 16 14 9 38 38 H 1.08995 * 109.07175 * 63.59926 * 17 16 14 39 39 H 1.09003 * 109.06517 * 182.54828 * 17 16 14 40 40 H 1.08997 * 109.16610 * 288.13317 * 18 17 16 41 41 H 1.09001 * 109.11735 * 168.91506 * 18 17 16 42 42 H 1.08000 * 125.61848 * 359.94096 * 23 22 20 43 43 H 1.07995 * 120.09749 * 359.95286 * 26 25 24 44 44 H 1.08001 * 119.36160 * 180.19134 * 27 26 25 45 45 H 1.08002 * 120.18277 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 -0.1485 -2.5576 0.0005 11 6 -0.4301 -4.0799 0.1437 12 6 0.8718 -4.5774 0.7852 13 1 0.8966 -4.3512 1.8511 14 6 1.9026 -3.7186 -0.0005 15 1 1.9339 -4.0860 -1.0263 16 6 3.2565 -3.9348 0.6339 17 6 3.6454 -5.4043 0.3954 18 6 2.5925 -6.3601 0.9525 19 7 1.2348 -5.9639 0.5214 20 6 0.3891 -6.8272 -0.0750 21 8 -0.7498 -6.4840 -0.3318 22 6 0.8418 -8.1819 -0.4148 23 6 1.5399 -9.0652 0.4242 24 7 1.7679 -10.1765 -0.2302 25 7 1.2349 -10.0768 -1.5179 26 6 1.1962 -10.9303 -2.5806 27 6 0.5819 -10.5518 -3.7251 28 7 0.0185 -9.3500 -3.8430 29 6 0.0345 -8.4927 -2.8472 30 6 0.6531 -8.8444 -1.6396 31 1 -0.4850 0.8400 0.0004 32 1 -0.5845 -2.0178 0.8410 33 1 -0.5661 -2.1879 -0.9359 34 1 -1.2819 -4.2593 0.7998 35 1 -0.5862 -4.5415 -0.8312 36 1 3.9921 -3.2769 0.1712 37 1 3.2005 -3.7352 1.7041 38 1 3.7507 -5.5755 -0.6759 39 1 4.6002 -5.6035 0.8822 40 1 2.6400 -6.3496 2.0413 41 1 2.8010 -7.3685 0.5950 42 1 1.8399 -8.8615 1.4415 43 1 1.6456 -11.9094 -2.5055 44 1 0.5528 -11.2346 -4.5614 45 1 -0.4270 -7.5226 -2.9584 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049523404.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:24 Heat of formation + Delta-G solvation = 136.136508 kcal Electronic energy + Delta-G solvation = -30320.333052 eV Core-core repulsion = 26341.616780 eV Total energy + Delta-G solvation = -3978.716271 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.80953 -40.23201 -38.65929 -37.57935 -35.42482 -33.95153 -32.61092 -32.16333 -31.69288 -29.90889 -28.69560 -28.17319 -25.29119 -25.04550 -24.47726 -23.67363 -22.49826 -21.45077 -20.85715 -19.73731 -19.24601 -18.22842 -17.74538 -16.79647 -16.42640 -16.39356 -15.79594 -15.50882 -15.22920 -15.06462 -14.62314 -14.29428 -14.24981 -13.80344 -13.69508 -13.34449 -13.29410 -13.16357 -12.81317 -12.43252 -12.25128 -11.84336 -11.57911 -11.51139 -11.28768 -11.03262 -10.83997 -10.67205 -10.49949 -10.44180 -10.32852 -10.15804 -10.07627 -9.97245 -9.82649 -9.59824 -9.14795 -8.57931 -8.27475 -8.11160 -6.80724 -5.68012 -3.02234 0.06990 0.50431 1.57125 1.92225 2.83042 3.02928 3.32492 3.41746 3.46456 3.48579 3.71914 3.84254 3.91144 4.41815 4.51408 4.58488 4.68343 4.83209 4.89346 5.04064 5.08474 5.15816 5.31964 5.38182 5.45274 5.60589 5.64622 5.75106 5.78529 5.85588 5.88407 6.01738 6.09564 6.11710 6.27604 6.31317 6.40815 6.57437 6.73303 6.80832 6.91061 6.92325 7.18822 7.24329 7.60310 7.65815 7.72072 7.86600 8.27240 8.41338 9.21568 9.85418 10.53531 11.43948 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.019888 B = 0.002995 C = 0.002856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1407.563892 B = 9347.017482 C = 9800.317826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.007 4.007 3 Si 0.910 3.090 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.226 4.226 8 H 0.078 0.922 9 N -0.592 5.592 10 C 0.172 3.828 11 C -0.127 4.127 12 C 0.117 3.883 13 H 0.082 0.918 14 C 0.159 3.841 15 H 0.017 0.983 16 C -0.115 4.115 17 C -0.129 4.129 18 C 0.105 3.895 19 N -0.590 5.590 20 C 0.595 3.405 21 O -0.528 6.528 22 C -0.255 4.255 23 C 0.108 3.892 24 N -0.303 5.303 25 N -0.250 5.250 26 C 0.062 3.938 27 C 0.026 3.974 28 N -0.445 5.445 29 C 0.171 3.829 30 C 0.083 3.917 31 H 0.252 0.748 32 H 0.057 0.943 33 H 0.039 0.961 34 H 0.063 0.937 35 H 0.077 0.923 36 H 0.066 0.934 37 H 0.064 0.936 38 H 0.062 0.938 39 H 0.072 0.928 40 H 0.069 0.931 41 H 0.079 0.921 42 H 0.205 0.795 43 H 0.181 0.819 44 H 0.186 0.814 45 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.964 -22.752 -1.510 23.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.203 4.203 3 Si 0.740 3.260 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.354 4.354 8 H 0.096 0.904 9 N -0.317 5.317 10 C 0.047 3.953 11 C -0.166 4.166 12 C 0.013 3.987 13 H 0.100 0.900 14 C 0.050 3.950 15 H 0.034 0.966 16 C -0.154 4.154 17 C -0.168 4.168 18 C -0.018 4.018 19 N -0.322 5.322 20 C 0.382 3.618 21 O -0.405 6.405 22 C -0.274 4.274 23 C -0.070 4.070 24 N -0.127 5.127 25 N -0.018 5.018 26 C -0.066 4.066 27 C -0.115 4.115 28 N -0.156 5.156 29 C -0.009 4.009 30 C -0.039 4.039 31 H 0.063 0.937 32 H 0.075 0.925 33 H 0.058 0.942 34 H 0.082 0.918 35 H 0.096 0.904 36 H 0.085 0.915 37 H 0.083 0.917 38 H 0.080 0.920 39 H 0.090 0.910 40 H 0.087 0.913 41 H 0.097 0.903 42 H 0.221 0.779 43 H 0.198 0.802 44 H 0.203 0.797 45 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 4.520 -23.484 -2.342 24.029 hybrid contribution 0.709 1.302 0.827 1.698 sum 5.229 -22.182 -1.515 22.840 Atomic orbital electron populations 1.69947 1.04857 1.25042 1.56794 1.24799 0.95663 0.97588 1.02285 0.86160 0.78565 0.83722 0.77537 1.21669 1.21717 1.20744 1.18979 0.90318 0.82221 1.43924 0.90388 1.44085 1.01816 0.99295 1.86499 1.21754 0.83588 0.88787 1.01143 1.22923 0.94693 0.97793 1.01167 1.22426 0.98806 0.78089 0.99423 0.90041 1.20748 0.91400 0.87183 0.95685 0.96577 1.21425 0.98548 0.94102 1.01310 1.21888 0.97621 0.95741 1.01503 1.21881 0.81779 0.98728 0.99370 1.47831 1.14104 1.11211 1.59079 1.16873 0.84619 0.82510 0.77770 1.90833 1.18138 1.77294 1.54205 1.19924 1.14582 0.98772 0.94088 1.24213 0.93414 0.89299 1.00070 1.77659 1.24596 1.23116 0.87324 1.46140 1.34374 1.10775 1.10511 1.22619 1.01892 0.97032 0.85094 1.22439 0.97551 0.94921 0.96627 1.68264 1.15189 1.02385 1.29771 1.23213 0.93023 1.00059 0.84595 1.20313 0.98945 0.87098 0.97533 0.93728 0.92523 0.94237 0.91848 0.90411 0.91489 0.91696 0.91964 0.90961 0.91271 0.90251 0.77859 0.80207 0.79742 0.79189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.01 10.46 55.49 0.58 -26.43 16 2 C -0.01 -0.19 5.49 -17.43 -0.10 -0.29 16 3 Si 0.91 21.96 29.55 -169.99 -5.02 16.94 16 4 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 7 C -0.23 -6.17 9.94 -15.06 -0.15 -6.32 16 8 H 0.08 2.04 7.31 -52.49 -0.38 1.65 16 9 N -0.59 -14.92 3.35 -163.29 -0.55 -15.47 16 10 C 0.17 4.26 5.47 -1.69 -0.01 4.25 16 11 C -0.13 -2.63 4.94 -25.20 -0.12 -2.75 16 12 C 0.12 2.14 3.32 -66.81 -0.22 1.92 16 13 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 14 C 0.16 3.24 2.58 -68.37 -0.18 3.06 16 15 H 0.02 0.37 8.04 -51.93 -0.42 -0.05 16 16 C -0.12 -1.91 5.45 -27.25 -0.15 -2.06 16 17 C -0.13 -1.59 5.92 -26.42 -0.16 -1.75 16 18 C 0.11 1.20 5.83 -3.44 -0.02 1.18 16 19 N -0.59 -8.88 2.91 -165.48 -0.48 -9.36 16 20 C 0.60 9.28 7.50 -12.79 -0.10 9.19 16 21 O -0.53 -9.85 14.08 5.20 0.07 -9.78 16 22 C -0.26 -3.30 5.31 -104.75 -0.56 -3.85 16 23 C 0.11 1.13 9.62 -17.10 -0.16 0.97 16 24 N -0.30 -3.41 12.60 30.76 0.39 -3.02 16 25 N -0.25 -2.73 3.91 -10.50 -0.04 -2.77 16 26 C 0.06 0.47 11.25 -16.59 -0.19 0.28 16 27 C 0.03 0.19 11.07 -17.98 -0.20 -0.01 16 28 N -0.45 -4.72 10.44 -13.26 -0.14 -4.86 16 29 C 0.17 2.01 11.31 -17.01 -0.19 1.81 16 30 C 0.08 1.03 6.81 -84.05 -0.57 0.46 16 31 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 32 H 0.06 1.54 7.19 -51.93 -0.37 1.16 16 33 H 0.04 1.08 7.81 -51.93 -0.41 0.67 16 34 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 35 H 0.08 1.66 6.36 -51.93 -0.33 1.33 16 36 H 0.07 1.17 7.70 -51.93 -0.40 0.77 16 37 H 0.06 1.07 8.12 -51.92 -0.42 0.65 16 38 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 39 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.08 0.76 4.59 -51.93 -0.24 0.52 16 42 H 0.20 1.47 7.41 -52.49 -0.39 1.08 16 43 H 0.18 0.70 8.06 -52.49 -0.42 0.28 16 44 H 0.19 0.65 8.06 -52.49 -0.42 0.23 16 45 H 0.19 2.19 8.06 -52.49 -0.42 1.77 16 LS Contribution 358.16 15.07 5.40 5.40 Total: -1.00 -34.22 358.16 -8.74 -42.96 By element: Atomic # 1 Polarization: 6.18 SS G_CDS: -5.88 Total: 0.31 kcal Atomic # 6 Polarization: 9.16 SS G_CDS: -3.07 Total: 6.09 kcal Atomic # 7 Polarization: -61.67 SS G_CDS: -0.24 Total: -61.91 kcal Atomic # 8 Polarization: -9.85 SS G_CDS: 0.07 Total: -9.78 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -34.22 -8.74 -42.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049523404.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 179.093 kcal (2) G-P(sol) polarization free energy of solvation -34.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 144.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.956 kcal (6) G-S(sol) free energy of system = (1) + (5) 136.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds