Wall clock time and date at job start Sat Apr 11 2020 06:20:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86802 * 119.99799 * 2 1 4 4 H 1.48504 * 109.47098 * 270.00266 * 3 2 1 5 5 H 1.48493 * 109.47096 * 30.00310 * 3 2 1 6 6 H 1.48501 * 109.47058 * 150.00382 * 3 2 1 7 7 C 1.38810 * 120.00131 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00180 * 179.97438 * 7 2 1 9 9 N 1.36937 * 119.99960 * 359.97438 * 7 2 1 10 10 C 1.48387 * 126.56120 * 359.97438 * 9 7 2 11 11 C 1.55474 * 106.97160 * 185.54486 * 10 9 7 12 12 C 1.53427 * 101.67350 * 22.60678 * 11 10 9 13 13 H 1.08993 * 111.15092 * 77.97802 * 12 11 10 14 14 C 1.45027 * 126.56047 * 180.02562 * 9 7 2 15 15 H 1.08998 * 108.70418 * 263.47006 * 14 9 7 16 16 C 1.51079 * 119.19656 * 28.75591 * 14 9 7 17 17 C 1.53867 * 107.34275 * 183.88565 * 16 14 9 18 18 C 1.52718 * 111.52318 * 303.06572 * 17 16 14 19 19 N 1.45722 * 116.37218 * 207.26744 * 12 11 10 20 20 C 1.34773 * 122.22781 * 350.12146 * 19 12 11 21 21 O 1.21689 * 120.00289 * 355.08873 * 20 19 12 22 22 C 1.46818 * 120.00029 * 175.09246 * 20 19 12 23 23 C 1.40411 * 126.54266 * 47.37437 * 22 20 19 24 24 N 1.30969 * 108.76671 * 179.97438 * 23 22 20 25 25 N 1.39722 * 109.48788 * 359.97438 * 24 23 22 26 26 C 1.36354 * 133.19313 * 180.02562 * 25 24 23 27 27 C 1.35298 * 119.80304 * 179.31569 * 26 25 24 28 28 N 1.33248 * 121.27342 * 0.56804 * 27 26 25 29 29 C 1.31403 * 121.07999 * 359.63979 * 28 27 26 30 30 C 1.36823 * 107.96441 * 359.76582 * 25 24 23 31 31 H 0.96997 * 119.99965 * 359.97438 * 1 2 3 32 32 H 1.08996 * 109.96099 * 304.93042 * 10 9 7 33 33 H 1.08999 * 109.95442 * 66.13513 * 10 9 7 34 34 H 1.09004 * 110.98308 * 140.70243 * 11 10 9 35 35 H 1.08995 * 110.98714 * 264.50523 * 11 10 9 36 36 H 1.08994 * 109.88345 * 303.34948 * 16 14 9 37 37 H 1.09008 * 109.87887 * 64.42622 * 16 14 9 38 38 H 1.08995 * 109.07175 * 63.59926 * 17 16 14 39 39 H 1.09003 * 109.06517 * 182.54828 * 17 16 14 40 40 H 1.08997 * 109.16610 * 288.13317 * 18 17 16 41 41 H 1.09001 * 109.11735 * 168.91506 * 18 17 16 42 42 H 1.08000 * 125.61848 * 359.94096 * 23 22 20 43 43 H 1.07995 * 120.09749 * 359.95286 * 26 25 24 44 44 H 1.08001 * 119.36160 * 180.19134 * 27 26 25 45 45 H 1.08002 * 120.18277 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 -0.1485 -2.5576 0.0005 11 6 -0.4301 -4.0799 0.1437 12 6 0.8718 -4.5774 0.7852 13 1 0.8966 -4.3512 1.8511 14 6 1.9026 -3.7186 -0.0005 15 1 1.9339 -4.0860 -1.0263 16 6 3.2565 -3.9348 0.6339 17 6 3.6454 -5.4043 0.3954 18 6 2.5925 -6.3601 0.9525 19 7 1.2348 -5.9639 0.5214 20 6 0.3891 -6.8272 -0.0750 21 8 -0.7498 -6.4840 -0.3318 22 6 0.8418 -8.1819 -0.4148 23 6 1.5399 -9.0652 0.4242 24 7 1.7679 -10.1765 -0.2302 25 7 1.2349 -10.0768 -1.5179 26 6 1.1962 -10.9303 -2.5806 27 6 0.5819 -10.5518 -3.7251 28 7 0.0185 -9.3500 -3.8430 29 6 0.0345 -8.4927 -2.8472 30 6 0.6531 -8.8444 -1.6396 31 1 -0.4850 0.8400 0.0004 32 1 -0.5845 -2.0178 0.8410 33 1 -0.5661 -2.1879 -0.9359 34 1 -1.2819 -4.2593 0.7998 35 1 -0.5862 -4.5415 -0.8312 36 1 3.9921 -3.2769 0.1712 37 1 3.2005 -3.7352 1.7041 38 1 3.7507 -5.5755 -0.6759 39 1 4.6002 -5.6035 0.8822 40 1 2.6400 -6.3496 2.0413 41 1 2.8010 -7.3685 0.5950 42 1 1.8399 -8.8615 1.4415 43 1 1.6456 -11.9094 -2.5055 44 1 0.5528 -11.2346 -4.5614 45 1 -0.4270 -7.5226 -2.9584 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049523404.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:24 Heat of formation + Delta-G solvation = 113.001273 kcal Electronic energy + Delta-G solvation = -30321.336271 eV Core-core repulsion = 26341.616780 eV Total energy + Delta-G solvation = -3979.719490 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.61474 -41.55471 -39.55974 -38.92631 -36.90314 -34.83130 -34.18783 -33.78632 -32.48220 -31.23351 -30.15933 -29.58652 -26.58522 -26.24872 -25.86229 -24.69884 -23.47304 -22.75345 -22.37366 -21.38827 -20.38875 -19.23370 -18.55495 -18.39601 -17.53776 -17.32062 -17.08283 -16.69070 -16.47063 -16.24430 -15.96058 -15.70254 -15.46505 -15.21866 -15.01296 -14.45557 -14.21517 -14.11876 -14.06941 -13.96638 -13.78637 -13.37290 -13.12993 -12.86598 -12.71523 -12.47649 -12.21081 -12.08278 -12.03626 -11.85578 -11.73547 -11.65917 -11.54707 -11.41753 -11.09133 -10.94196 -10.75238 -10.49811 -9.54892 -8.95528 -8.87888 -7.81899 -5.18667 -0.70007 -0.27884 0.83318 1.05048 1.47165 1.49400 1.57945 1.75469 2.08138 2.35648 2.52241 2.91389 3.11623 3.23865 3.36700 3.39858 3.65798 3.71629 3.96765 3.97919 4.02395 4.07860 4.11328 4.23731 4.29112 4.35823 4.36831 4.47813 4.59691 4.62260 4.68484 4.80646 4.94858 5.00350 5.02853 5.08231 5.14025 5.17588 5.30761 5.37568 5.45869 5.51156 5.62374 5.65315 5.75773 6.13410 6.20383 6.49941 6.52317 7.07798 7.21389 7.77985 8.47953 9.29823 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.019888 B = 0.002995 C = 0.002856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1407.563892 B = 9347.017482 C = 9800.317826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.069 4.069 3 Si 0.978 3.022 4 H -0.290 1.290 5 H -0.296 1.296 6 H -0.263 1.263 7 C -0.232 4.232 8 H 0.089 0.911 9 N -0.612 5.612 10 C 0.183 3.817 11 C -0.110 4.110 12 C 0.134 3.866 13 H 0.086 0.914 14 C 0.153 3.847 15 H -0.004 1.004 16 C -0.110 4.110 17 C -0.119 4.119 18 C 0.101 3.899 19 N -0.590 5.590 20 C 0.596 3.404 21 O -0.571 6.571 22 C -0.286 4.286 23 C 0.125 3.875 24 N -0.313 5.313 25 N -0.251 5.251 26 C 0.074 3.926 27 C 0.026 3.974 28 N -0.452 5.452 29 C 0.139 3.861 30 C 0.077 3.923 31 H 0.246 0.754 32 H 0.027 0.973 33 H -0.001 1.001 34 H 0.066 0.934 35 H 0.067 0.933 36 H 0.055 0.945 37 H 0.069 0.931 38 H 0.054 0.946 39 H 0.111 0.889 40 H 0.099 0.901 41 H 0.105 0.895 42 H 0.237 0.763 43 H 0.225 0.775 44 H 0.229 0.771 45 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.950 -26.332 -0.885 27.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.603 5.603 2 C -0.262 4.262 3 Si 0.806 3.194 4 H -0.217 1.217 5 H -0.223 1.223 6 H -0.188 1.188 7 C -0.360 4.360 8 H 0.107 0.893 9 N -0.336 5.336 10 C 0.057 3.943 11 C -0.149 4.149 12 C 0.029 3.971 13 H 0.104 0.896 14 C 0.045 3.955 15 H 0.014 0.986 16 C -0.149 4.149 17 C -0.158 4.158 18 C -0.020 4.020 19 N -0.322 5.322 20 C 0.385 3.615 21 O -0.451 6.451 22 C -0.304 4.304 23 C -0.053 4.053 24 N -0.137 5.137 25 N -0.019 5.019 26 C -0.054 4.054 27 C -0.117 4.117 28 N -0.163 5.163 29 C -0.039 4.039 30 C -0.046 4.046 31 H 0.055 0.945 32 H 0.045 0.955 33 H 0.017 0.983 34 H 0.085 0.915 35 H 0.086 0.914 36 H 0.073 0.927 37 H 0.087 0.913 38 H 0.073 0.927 39 H 0.130 0.870 40 H 0.117 0.883 41 H 0.123 0.877 42 H 0.253 0.747 43 H 0.241 0.759 44 H 0.245 0.755 45 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 7.564 -27.098 -1.697 28.185 hybrid contribution -0.226 2.226 0.452 2.283 sum 7.338 -24.871 -1.245 25.961 Atomic orbital electron populations 1.70180 1.06477 1.25227 1.58458 1.25682 0.96524 1.01118 1.02862 0.85082 0.77832 0.79165 0.77289 1.21707 1.22313 1.18787 1.19407 0.91014 0.83146 1.42478 0.89331 1.44342 1.02065 1.00866 1.86343 1.21449 0.83872 0.91219 0.97731 1.22650 0.96472 0.94675 1.01105 1.22005 0.96072 0.80187 0.98857 0.89577 1.20923 0.94362 0.84934 0.95279 0.98649 1.21399 0.95439 0.97198 1.00851 1.21863 0.99666 0.92558 1.01695 1.22214 0.79047 0.99539 1.01161 1.47860 1.15739 1.09441 1.59111 1.17245 0.84014 0.83521 0.76688 1.90801 1.20113 1.78435 1.55733 1.19588 1.17497 0.97866 0.95413 1.24658 0.91719 0.88085 1.00852 1.77649 1.25244 1.23361 0.87429 1.46456 1.33683 1.10559 1.11171 1.23491 1.00279 0.97878 0.83794 1.23214 0.96322 0.94111 0.98024 1.68230 1.14982 1.03546 1.29557 1.22987 0.95103 1.00409 0.85410 1.20336 0.98908 0.87912 0.97468 0.94504 0.95486 0.98301 0.91518 0.91425 0.92667 0.91252 0.92748 0.87042 0.88320 0.87683 0.74654 0.75895 0.75511 0.80751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.08 10.46 21.65 0.23 -58.85 16 2 C -0.07 -4.00 5.49 84.86 0.47 -3.53 16 3 Si 0.98 46.19 29.55 68.60 2.03 48.21 16 4 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 5 H -0.30 -14.16 7.11 99.48 0.71 -13.45 16 6 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 7 C -0.23 -12.97 9.94 84.03 0.84 -12.14 16 8 H 0.09 4.65 7.31 -2.91 -0.02 4.63 16 9 N -0.61 -32.17 3.35 -670.53 -2.25 -34.41 16 10 C 0.18 9.74 5.47 86.87 0.48 10.22 16 11 C -0.11 -4.84 4.94 31.59 0.16 -4.69 16 12 C 0.13 4.98 3.32 46.13 0.15 5.13 16 13 H 0.09 3.15 8.14 -2.39 -0.02 3.13 16 14 C 0.15 6.35 2.58 45.49 0.12 6.46 16 15 H 0.00 -0.18 8.04 -2.39 -0.02 -0.20 16 16 C -0.11 -3.52 5.45 30.26 0.16 -3.36 16 17 C -0.12 -2.58 5.92 30.79 0.18 -2.39 16 18 C 0.10 1.96 5.83 86.03 0.50 2.46 16 19 N -0.59 -17.20 2.91 -795.68 -2.32 -19.51 16 20 C 0.60 18.63 7.50 86.49 0.65 19.28 16 21 O -0.57 -22.31 14.08 -4.31 -0.06 -22.37 16 22 C -0.29 -7.05 5.31 -19.95 -0.11 -7.16 16 23 C 0.12 2.23 9.62 85.35 0.82 3.05 16 24 N -0.31 -5.99 12.60 -56.59 -0.71 -6.70 16 25 N -0.25 -4.81 3.91 -187.14 -0.73 -5.54 16 26 C 0.07 0.83 11.25 83.31 0.94 1.76 16 27 C 0.03 0.29 11.07 83.80 0.93 1.22 16 28 N -0.45 -9.12 10.44 -195.85 -2.05 -11.17 16 29 C 0.14 3.34 11.31 85.23 0.96 4.31 16 30 C 0.08 1.84 6.81 39.39 0.27 2.11 16 31 H 0.25 14.83 8.31 -92.71 -0.77 14.06 16 32 H 0.03 1.58 7.19 -2.39 -0.02 1.56 16 33 H 0.00 -0.08 7.81 -2.39 -0.02 -0.10 16 34 H 0.07 2.84 8.14 -2.38 -0.02 2.82 16 35 H 0.07 3.11 6.36 -2.39 -0.02 3.09 16 36 H 0.05 1.88 7.70 -2.39 -0.02 1.86 16 37 H 0.07 2.16 8.12 -2.38 -0.02 2.14 16 38 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 39 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 40 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 41 H 0.11 1.56 4.59 -2.39 -0.01 1.55 16 42 H 0.24 2.33 7.41 -2.91 -0.02 2.31 16 43 H 0.22 0.45 8.06 -2.91 -0.02 0.43 16 44 H 0.23 0.51 8.06 -2.91 -0.02 0.48 16 45 H 0.18 4.53 8.06 -2.91 -0.02 4.50 16 Total: -1.00 -80.89 358.16 2.68 -78.22 By element: Atomic # 1 Polarization: 8.37 SS G_CDS: 1.02 Total: 9.39 kcal Atomic # 6 Polarization: 15.23 SS G_CDS: 7.51 Total: 22.74 kcal Atomic # 7 Polarization: -128.36 SS G_CDS: -7.83 Total: -136.19 kcal Atomic # 8 Polarization: -22.31 SS G_CDS: -0.06 Total: -22.37 kcal Atomic # 14 Polarization: 46.19 SS G_CDS: 2.03 Total: 48.21 kcal Total: -80.89 2.68 -78.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049523404.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 191.219 kcal (2) G-P(sol) polarization free energy of solvation -80.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.218 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds