Wall clock time and date at job start Sat Apr 11 2020 06:20:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86795 * 120.00475 * 2 1 4 4 H 1.48500 * 109.47285 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47542 * 300.00399 * 3 2 1 6 6 H 1.48506 * 109.46858 * 60.00908 * 3 2 1 7 7 C 1.38816 * 119.99355 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99510 * 179.97438 * 7 2 1 9 9 N 1.36933 * 120.00324 * 359.97438 * 7 2 1 10 10 C 1.47119 * 125.76701 * 359.97438 * 9 7 2 11 11 C 1.54560 * 107.25609 * 182.60057 * 10 9 7 12 12 C 1.54424 * 102.45119 * 21.67025 * 11 10 9 13 13 H 1.08995 * 110.00213 * 80.25786 * 12 11 10 14 14 C 1.48210 * 125.76903 * 180.02562 * 9 7 2 15 15 H 1.08998 * 111.52825 * 32.97071 * 14 9 7 16 16 C 1.53011 * 107.11348 * 270.86006 * 14 9 7 17 17 C 1.52729 * 110.80805 * 191.93875 * 16 14 9 18 18 C 1.53459 * 108.62018 * 63.65720 * 17 16 14 19 19 N 1.45125 * 111.60284 * 203.43037 * 12 11 10 20 20 C 1.34781 * 119.57289 * 248.62718 * 19 12 11 21 21 O 1.21682 * 119.99635 * 175.70229 * 20 19 12 22 22 C 1.46810 * 119.99965 * 355.69970 * 20 19 12 23 23 C 1.40424 * 126.53803 * 50.16914 * 22 20 19 24 24 N 1.30968 * 108.76013 * 179.97438 * 23 22 20 25 25 N 1.39715 * 109.49290 * 359.97438 * 24 23 22 26 26 C 1.36355 * 133.19229 * 180.02562 * 25 24 23 27 27 C 1.35297 * 119.80590 * 179.97438 * 26 25 24 28 28 N 1.33247 * 121.27320 * 0.02562 * 27 26 25 29 29 C 1.31412 * 121.07846 * 0.02562 * 28 27 26 30 30 C 1.36827 * 107.96785 * 359.73330 * 25 24 23 31 31 H 0.97006 * 119.99524 * 359.97438 * 1 2 3 32 32 H 1.08998 * 109.88665 * 302.01713 * 10 9 7 33 33 H 1.09000 * 109.88515 * 63.19062 * 10 9 7 34 34 H 1.08996 * 110.81347 * 139.90623 * 11 10 9 35 35 H 1.09001 * 110.81364 * 263.23558 * 11 10 9 36 36 H 1.09004 * 109.20921 * 71.59021 * 16 14 9 37 37 H 1.09009 * 109.17439 * 312.25601 * 16 14 9 38 38 H 1.09006 * 109.64412 * 183.45076 * 17 16 14 39 39 H 1.09007 * 109.64168 * 303.86158 * 17 16 14 40 40 H 1.09002 * 109.83396 * 61.54877 * 18 17 16 41 41 H 1.08999 * 109.83244 * 182.50657 * 18 17 16 42 42 H 1.07995 * 125.62015 * 0.02562 * 23 22 20 43 43 H 1.07991 * 120.09842 * 0.02562 * 26 25 24 44 44 H 1.07993 * 119.36534 * 179.97438 * 27 26 25 45 45 H 1.07998 * 120.18112 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7103 1.3462 -0.0006 5 1 1.8916 2.3965 -1.2124 6 1 1.8917 2.3962 1.2127 7 6 2.0101 -1.2023 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3254 -2.3881 -0.0005 10 6 -0.1384 -2.5358 0.0005 11 6 -0.4464 -4.0490 0.0671 12 6 0.8584 -4.6288 0.6553 13 1 0.8723 -4.4933 1.7367 14 6 1.9336 -3.7397 -0.0005 15 1 2.8735 -3.7553 0.5513 16 6 2.1384 -4.1412 -1.4627 17 6 2.4839 -5.6247 -1.5747 18 6 1.2906 -6.4454 -1.0673 19 7 1.0222 -6.0297 0.3137 20 6 0.9309 -6.9651 1.2798 21 8 0.9888 -8.1457 0.9909 22 6 0.7616 -6.5595 2.6806 23 6 -0.1870 -5.6521 3.1794 24 7 -0.0291 -5.5477 4.4754 25 7 1.0203 -6.3741 4.8853 26 6 1.5837 -6.6342 6.0994 27 6 2.6153 -7.5051 6.1894 28 7 3.0980 -8.1194 5.1100 29 6 2.5877 -7.8995 3.9191 30 6 1.5129 -7.0109 3.7790 31 1 -0.4850 0.8401 0.0004 32 1 -0.5611 -2.0328 0.8702 33 1 -0.5544 -2.1127 -0.9138 34 1 -1.2898 -4.2437 0.7294 35 1 -0.6374 -4.4495 -0.9285 36 1 2.9507 -3.5507 -1.8864 37 1 1.2227 -3.9432 -2.0200 38 1 2.6855 -5.8765 -2.6159 39 1 3.3630 -5.8430 -0.9682 40 1 0.4156 -6.2474 -1.6865 41 1 1.5330 -7.5077 -1.0969 42 1 -0.9255 -5.1276 2.5915 43 1 1.2073 -6.1472 6.9867 44 1 3.0565 -7.7055 7.1544 45 1 2.9905 -8.4051 3.0540 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049523405.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:27 Heat of formation + Delta-G solvation = 128.435605 kcal Electronic energy + Delta-G solvation = -30649.813280 eV Core-core repulsion = 26670.763073 eV Total energy + Delta-G solvation = -3979.050208 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.70423 -40.29324 -38.51841 -37.95933 -34.99399 -33.98034 -32.73749 -32.10994 -31.58122 -29.70614 -28.99993 -28.17125 -25.22960 -24.98579 -24.51565 -23.61166 -22.49183 -21.85573 -20.48445 -20.00841 -18.82754 -18.02203 -17.67526 -17.02264 -16.83682 -16.15926 -16.03300 -15.45189 -15.21096 -14.90104 -14.71764 -14.56643 -13.94855 -13.72477 -13.55380 -13.30181 -13.24845 -13.19081 -12.82743 -12.52078 -12.13641 -11.97608 -11.45844 -11.36134 -11.14315 -11.01168 -10.96077 -10.83851 -10.67337 -10.49990 -10.28464 -10.17640 -10.09718 -10.02795 -9.85865 -9.68098 -9.56860 -8.68544 -8.35125 -8.03027 -6.92327 -5.77432 -3.11372 0.16539 0.61628 1.71597 2.06646 2.80925 3.08328 3.32822 3.36061 3.42267 3.44035 3.82874 3.91749 4.01092 4.42458 4.54976 4.68581 4.76954 4.97591 5.09875 5.13256 5.20994 5.24058 5.28988 5.38934 5.48054 5.50051 5.58904 5.69603 5.80578 5.83028 5.98365 6.08440 6.11714 6.17859 6.21654 6.25154 6.29800 6.41606 6.48013 6.73730 6.85475 6.99812 7.08644 7.30267 7.48965 7.51283 7.59548 7.75696 8.16791 8.29552 9.14613 9.74082 10.39158 11.33882 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011993 B = 0.003894 C = 0.003343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2334.120955 B = 7189.730620 C = 8373.873576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.005 4.005 3 Si 0.910 3.090 4 H -0.280 1.280 5 H -0.290 1.290 6 H -0.291 1.291 7 C -0.227 4.227 8 H 0.078 0.922 9 N -0.598 5.598 10 C 0.180 3.820 11 C -0.156 4.156 12 C 0.120 3.880 13 H 0.097 0.903 14 C 0.157 3.843 15 H 0.059 0.941 16 C -0.130 4.130 17 C -0.133 4.133 18 C 0.115 3.885 19 N -0.582 5.582 20 C 0.596 3.404 21 O -0.548 6.548 22 C -0.261 4.261 23 C 0.119 3.881 24 N -0.296 5.296 25 N -0.251 5.251 26 C 0.070 3.930 27 C 0.020 3.980 28 N -0.445 5.445 29 C 0.165 3.835 30 C 0.083 3.917 31 H 0.252 0.748 32 H 0.052 0.948 33 H 0.043 0.957 34 H 0.060 0.940 35 H 0.065 0.935 36 H 0.060 0.940 37 H 0.063 0.937 38 H 0.069 0.931 39 H 0.062 0.938 40 H 0.067 0.933 41 H 0.091 0.909 42 H 0.206 0.794 43 H 0.182 0.818 44 H 0.185 0.815 45 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.083 -14.749 7.063 16.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.202 4.202 3 Si 0.741 3.259 4 H -0.205 1.205 5 H -0.217 1.217 6 H -0.218 1.218 7 C -0.355 4.355 8 H 0.096 0.904 9 N -0.323 5.323 10 C 0.055 3.945 11 C -0.195 4.195 12 C 0.015 3.985 13 H 0.115 0.885 14 C 0.048 3.952 15 H 0.077 0.923 16 C -0.170 4.170 17 C -0.171 4.171 18 C -0.007 4.007 19 N -0.312 5.312 20 C 0.383 3.617 21 O -0.427 6.427 22 C -0.279 4.279 23 C -0.060 4.060 24 N -0.119 5.119 25 N -0.018 5.018 26 C -0.059 4.059 27 C -0.121 4.121 28 N -0.156 5.156 29 C -0.015 4.015 30 C -0.039 4.039 31 H 0.062 0.938 32 H 0.070 0.930 33 H 0.061 0.939 34 H 0.079 0.921 35 H 0.084 0.916 36 H 0.079 0.921 37 H 0.082 0.918 38 H 0.087 0.913 39 H 0.081 0.919 40 H 0.086 0.914 41 H 0.110 0.890 42 H 0.222 0.778 43 H 0.199 0.801 44 H 0.202 0.798 45 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 2.222 -14.969 8.258 17.240 hybrid contribution -0.129 1.468 -0.772 1.664 sum 2.092 -13.501 7.485 15.579 Atomic orbital electron populations 1.69951 1.04834 1.24981 1.57008 1.24771 0.95691 0.97563 1.02150 0.86076 0.78753 0.83863 0.77254 1.20541 1.21741 1.21779 1.19067 0.90439 0.82166 1.43806 0.90423 1.44714 1.01409 0.99289 1.86863 1.21186 0.84407 0.87490 1.01431 1.23212 0.95805 1.00078 1.00419 1.22013 0.97343 0.78726 1.00450 0.88549 1.21330 0.94367 0.86015 0.93472 0.92290 1.22118 1.02007 0.93348 0.99535 1.21928 0.97619 0.96809 1.00791 1.21683 0.98019 0.99965 0.81054 1.47449 1.69277 1.06589 1.07924 1.17018 0.76138 0.85120 0.83407 1.90767 1.51783 1.17016 1.83125 1.19746 1.05291 1.09066 0.93825 1.24344 0.97032 0.93536 0.91046 1.77749 1.04796 1.15164 1.14209 1.46201 1.22206 1.27242 1.06196 1.22649 0.95855 0.99837 0.87509 1.22376 0.94965 0.95602 0.99187 1.68216 1.27211 1.21696 0.98447 1.23060 0.89570 0.92452 0.96449 1.20263 0.98151 0.97629 0.87867 0.93762 0.92969 0.93892 0.92129 0.91623 0.92140 0.91789 0.91269 0.91912 0.91429 0.89032 0.77753 0.80128 0.79776 0.79549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.88 10.33 55.49 0.57 -25.30 16 2 C -0.01 -0.15 5.49 -17.43 -0.10 -0.24 16 3 Si 0.91 21.51 29.55 -169.99 -5.02 16.49 16 4 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 7 C -0.23 -5.97 10.29 -15.06 -0.16 -6.13 16 8 H 0.08 2.01 7.83 -52.48 -0.41 1.60 16 9 N -0.60 -14.03 2.91 -162.22 -0.47 -14.50 16 10 C 0.18 4.01 5.19 -2.88 -0.01 3.99 16 11 C -0.16 -2.63 5.98 -25.17 -0.15 -2.78 16 12 C 0.12 1.96 2.43 -67.31 -0.16 1.80 16 13 H 0.10 1.64 4.75 -51.93 -0.25 1.39 16 14 C 0.16 2.97 3.60 -66.37 -0.24 2.73 16 15 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 16 C -0.13 -2.19 5.11 -26.86 -0.14 -2.33 16 17 C -0.13 -1.77 6.09 -26.63 -0.16 -1.94 16 18 C 0.11 1.54 6.15 -3.70 -0.02 1.52 16 19 N -0.58 -8.66 2.73 -166.60 -0.46 -9.12 16 20 C 0.60 9.21 7.51 -12.79 -0.10 9.11 16 21 O -0.55 -9.47 16.44 5.21 0.09 -9.39 16 22 C -0.26 -3.81 5.07 -104.75 -0.53 -4.35 16 23 C 0.12 1.67 9.57 -17.10 -0.16 1.51 16 24 N -0.30 -4.29 12.60 30.76 0.39 -3.90 16 25 N -0.25 -3.26 3.91 -10.51 -0.04 -3.30 16 26 C 0.07 0.65 11.24 -16.59 -0.19 0.46 16 27 C 0.02 0.17 11.07 -17.99 -0.20 -0.03 16 28 N -0.44 -4.86 10.44 -13.26 -0.14 -5.00 16 29 C 0.16 1.95 11.31 -17.01 -0.19 1.76 16 30 C 0.08 1.13 6.81 -84.06 -0.57 0.56 16 31 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 32 H 0.05 1.30 7.30 -51.93 -0.38 0.92 16 33 H 0.04 1.07 7.60 -51.93 -0.39 0.68 16 34 H 0.06 0.90 7.06 -51.93 -0.37 0.53 16 35 H 0.07 1.07 6.85 -51.93 -0.36 0.71 16 36 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.06 1.15 7.13 -51.92 -0.37 0.78 16 38 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 39 H 0.06 0.84 8.14 -51.92 -0.42 0.42 16 40 H 0.07 0.87 7.55 -51.93 -0.39 0.48 16 41 H 0.09 1.21 6.97 -51.93 -0.36 0.85 16 42 H 0.21 2.54 6.48 -52.49 -0.34 2.20 16 43 H 0.18 1.04 8.06 -52.49 -0.42 0.62 16 44 H 0.19 0.81 8.06 -52.49 -0.42 0.39 16 45 H 0.19 1.96 8.06 -52.49 -0.42 1.54 16 LS Contribution 357.73 15.07 5.39 5.39 Total: -1.00 -32.15 357.73 -8.49 -40.64 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: -5.71 Total: 2.33 kcal Atomic # 6 Polarization: 8.74 SS G_CDS: -3.08 Total: 5.66 kcal Atomic # 7 Polarization: -60.97 SS G_CDS: -0.15 Total: -61.12 kcal Atomic # 8 Polarization: -9.47 SS G_CDS: 0.09 Total: -9.39 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -32.15 -8.49 -40.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049523405.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.078 kcal (2) G-P(sol) polarization free energy of solvation -32.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 136.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.642 kcal (6) G-S(sol) free energy of system = (1) + (5) 128.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds