Wall clock time and date at job start Sat Apr 11 2020 06:20:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86795 * 120.00475 * 2 1 4 4 H 1.48500 * 109.47285 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47542 * 300.00399 * 3 2 1 6 6 H 1.48506 * 109.46858 * 60.00908 * 3 2 1 7 7 C 1.38816 * 119.99355 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99510 * 179.97438 * 7 2 1 9 9 N 1.36933 * 120.00324 * 359.97438 * 7 2 1 10 10 C 1.47119 * 125.76701 * 359.97438 * 9 7 2 11 11 C 1.54560 * 107.25609 * 182.60057 * 10 9 7 12 12 C 1.54424 * 102.45119 * 21.67025 * 11 10 9 13 13 H 1.08995 * 110.00213 * 80.25786 * 12 11 10 14 14 C 1.48210 * 125.76903 * 180.02562 * 9 7 2 15 15 H 1.08998 * 111.52825 * 32.97071 * 14 9 7 16 16 C 1.53011 * 107.11348 * 270.86006 * 14 9 7 17 17 C 1.52729 * 110.80805 * 191.93875 * 16 14 9 18 18 C 1.53459 * 108.62018 * 63.65720 * 17 16 14 19 19 N 1.45125 * 111.60284 * 203.43037 * 12 11 10 20 20 C 1.34781 * 119.57289 * 248.62718 * 19 12 11 21 21 O 1.21682 * 119.99635 * 175.70229 * 20 19 12 22 22 C 1.46810 * 119.99965 * 355.69970 * 20 19 12 23 23 C 1.40424 * 126.53803 * 50.16914 * 22 20 19 24 24 N 1.30968 * 108.76013 * 179.97438 * 23 22 20 25 25 N 1.39715 * 109.49290 * 359.97438 * 24 23 22 26 26 C 1.36355 * 133.19229 * 180.02562 * 25 24 23 27 27 C 1.35297 * 119.80590 * 179.97438 * 26 25 24 28 28 N 1.33247 * 121.27320 * 0.02562 * 27 26 25 29 29 C 1.31412 * 121.07846 * 0.02562 * 28 27 26 30 30 C 1.36827 * 107.96785 * 359.73330 * 25 24 23 31 31 H 0.97006 * 119.99524 * 359.97438 * 1 2 3 32 32 H 1.08998 * 109.88665 * 302.01713 * 10 9 7 33 33 H 1.09000 * 109.88515 * 63.19062 * 10 9 7 34 34 H 1.08996 * 110.81347 * 139.90623 * 11 10 9 35 35 H 1.09001 * 110.81364 * 263.23558 * 11 10 9 36 36 H 1.09004 * 109.20921 * 71.59021 * 16 14 9 37 37 H 1.09009 * 109.17439 * 312.25601 * 16 14 9 38 38 H 1.09006 * 109.64412 * 183.45076 * 17 16 14 39 39 H 1.09007 * 109.64168 * 303.86158 * 17 16 14 40 40 H 1.09002 * 109.83396 * 61.54877 * 18 17 16 41 41 H 1.08999 * 109.83244 * 182.50657 * 18 17 16 42 42 H 1.07995 * 125.62015 * 0.02562 * 23 22 20 43 43 H 1.07991 * 120.09842 * 0.02562 * 26 25 24 44 44 H 1.07993 * 119.36534 * 179.97438 * 27 26 25 45 45 H 1.07998 * 120.18112 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7103 1.3462 -0.0006 5 1 1.8916 2.3965 -1.2124 6 1 1.8917 2.3962 1.2127 7 6 2.0101 -1.2023 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3254 -2.3881 -0.0005 10 6 -0.1384 -2.5358 0.0005 11 6 -0.4464 -4.0490 0.0671 12 6 0.8584 -4.6288 0.6553 13 1 0.8723 -4.4933 1.7367 14 6 1.9336 -3.7397 -0.0005 15 1 2.8735 -3.7553 0.5513 16 6 2.1384 -4.1412 -1.4627 17 6 2.4839 -5.6247 -1.5747 18 6 1.2906 -6.4454 -1.0673 19 7 1.0222 -6.0297 0.3137 20 6 0.9309 -6.9651 1.2798 21 8 0.9888 -8.1457 0.9909 22 6 0.7616 -6.5595 2.6806 23 6 -0.1870 -5.6521 3.1794 24 7 -0.0291 -5.5477 4.4754 25 7 1.0203 -6.3741 4.8853 26 6 1.5837 -6.6342 6.0994 27 6 2.6153 -7.5051 6.1894 28 7 3.0980 -8.1194 5.1100 29 6 2.5877 -7.8995 3.9191 30 6 1.5129 -7.0109 3.7790 31 1 -0.4850 0.8401 0.0004 32 1 -0.5611 -2.0328 0.8702 33 1 -0.5544 -2.1127 -0.9138 34 1 -1.2898 -4.2437 0.7294 35 1 -0.6374 -4.4495 -0.9285 36 1 2.9507 -3.5507 -1.8864 37 1 1.2227 -3.9432 -2.0200 38 1 2.6855 -5.8765 -2.6159 39 1 3.3630 -5.8430 -0.9682 40 1 0.4156 -6.2474 -1.6865 41 1 1.5330 -7.5077 -1.0969 42 1 -0.9255 -5.1276 2.5915 43 1 1.2073 -6.1472 6.9867 44 1 3.0565 -7.7055 7.1544 45 1 2.9905 -8.4051 3.0540 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049523405.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:26 Heat of formation + Delta-G solvation = 108.343605 kcal Electronic energy + Delta-G solvation = -30650.684535 eV Core-core repulsion = 26670.763073 eV Total energy + Delta-G solvation = -3979.921462 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.65219 -41.56864 -39.57652 -39.20977 -36.51295 -34.95037 -34.01307 -33.88621 -32.51246 -30.92338 -30.53938 -29.59120 -26.55099 -26.21519 -25.87614 -24.73520 -23.55432 -23.13724 -21.96931 -21.50202 -19.89896 -19.23920 -18.77690 -18.52219 -17.95162 -17.25036 -17.07687 -16.76076 -16.44740 -16.17054 -16.07082 -15.87535 -15.44420 -15.01990 -14.83941 -14.50164 -14.26442 -14.14466 -14.10151 -13.92575 -13.67159 -13.43189 -13.08870 -12.82770 -12.62107 -12.43039 -12.33500 -12.23713 -12.07921 -11.96929 -11.87500 -11.58857 -11.48689 -11.32223 -11.12037 -10.96982 -10.88334 -10.68949 -9.63132 -8.98105 -8.84605 -7.82439 -5.16832 -0.69379 -0.28516 0.83884 0.99520 1.46305 1.47053 1.56392 1.69173 2.04052 2.33592 2.50477 2.89519 3.11061 3.21406 3.35770 3.48868 3.61958 3.79219 3.82616 3.87549 3.97976 4.07265 4.11960 4.16380 4.24033 4.34336 4.41898 4.45900 4.61751 4.63421 4.70027 4.83036 4.89407 4.98675 5.02249 5.08088 5.08634 5.16107 5.36042 5.37129 5.45303 5.59177 5.60329 5.68599 5.80327 6.10484 6.20290 6.36955 6.48091 7.09738 7.12938 7.78340 8.42803 9.27313 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011993 B = 0.003894 C = 0.003343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2334.120955 B = 7189.730620 C = 8373.873576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.060 4.060 3 Si 0.969 3.031 4 H -0.268 1.268 5 H -0.294 1.294 6 H -0.295 1.295 7 C -0.232 4.232 8 H 0.078 0.922 9 N -0.616 5.616 10 C 0.191 3.809 11 C -0.140 4.140 12 C 0.141 3.859 13 H 0.093 0.907 14 C 0.150 3.850 15 H 0.050 0.950 16 C -0.120 4.120 17 C -0.120 4.120 18 C 0.113 3.887 19 N -0.580 5.580 20 C 0.603 3.397 21 O -0.567 6.567 22 C -0.291 4.291 23 C 0.116 3.884 24 N -0.322 5.322 25 N -0.253 5.253 26 C 0.065 3.935 27 C 0.032 3.968 28 N -0.447 5.447 29 C 0.148 3.852 30 C 0.078 3.922 31 H 0.246 0.754 32 H 0.019 0.981 33 H 0.008 0.992 34 H 0.085 0.915 35 H 0.077 0.923 36 H 0.046 0.954 37 H 0.052 0.948 38 H 0.096 0.904 39 H 0.064 0.936 40 H 0.078 0.922 41 H 0.100 0.900 42 H 0.213 0.787 43 H 0.217 0.783 44 H 0.231 0.769 45 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.257 -16.476 8.299 18.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.253 4.253 3 Si 0.799 3.201 4 H -0.193 1.193 5 H -0.221 1.221 6 H -0.222 1.222 7 C -0.361 4.361 8 H 0.096 0.904 9 N -0.341 5.341 10 C 0.066 3.934 11 C -0.179 4.179 12 C 0.035 3.965 13 H 0.111 0.889 14 C 0.043 3.957 15 H 0.068 0.932 16 C -0.160 4.160 17 C -0.158 4.158 18 C -0.009 4.009 19 N -0.309 5.309 20 C 0.392 3.608 21 O -0.447 6.447 22 C -0.309 4.309 23 C -0.061 4.061 24 N -0.146 5.146 25 N -0.020 5.020 26 C -0.063 4.063 27 C -0.110 4.110 28 N -0.158 5.158 29 C -0.030 4.030 30 C -0.046 4.046 31 H 0.055 0.945 32 H 0.037 0.963 33 H 0.026 0.974 34 H 0.103 0.897 35 H 0.096 0.904 36 H 0.065 0.935 37 H 0.071 0.929 38 H 0.114 0.886 39 H 0.083 0.917 40 H 0.096 0.904 41 H 0.118 0.882 42 H 0.229 0.771 43 H 0.234 0.766 44 H 0.247 0.753 45 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges 3.417 -16.737 9.464 19.529 hybrid contribution -0.381 1.922 -0.977 2.190 sum 3.037 -14.814 8.487 17.341 Atomic orbital electron populations 1.70151 1.06024 1.25007 1.58481 1.25492 0.96484 1.00458 1.02904 0.85138 0.78225 0.80170 0.76587 1.19294 1.22080 1.22182 1.19373 0.90777 0.83541 1.42438 0.90393 1.44932 1.02141 1.00322 1.86720 1.20881 0.83731 0.90708 0.98125 1.23057 0.96982 0.95951 1.01880 1.21616 0.95722 0.79275 0.99882 0.88931 1.21533 0.94526 0.84560 0.95081 0.93165 1.21926 1.00968 0.95829 0.97283 1.21846 0.97612 0.93774 1.02615 1.21831 0.98423 1.00351 0.80257 1.47396 1.69302 1.05590 1.08644 1.17065 0.75358 0.84703 0.83711 1.90749 1.52812 1.17675 1.83496 1.19687 1.06789 1.10731 0.93703 1.24455 0.97108 0.93392 0.91180 1.77673 1.06043 1.16421 1.14416 1.46483 1.21720 1.26580 1.07227 1.23489 0.95621 0.99800 0.87392 1.23189 0.93943 0.93858 1.00032 1.68264 1.27106 1.21668 0.98751 1.23158 0.89692 0.92907 0.97278 1.20469 0.98384 0.97746 0.87954 0.94502 0.96315 0.97383 0.89652 0.90411 0.93476 0.92923 0.88561 0.91689 0.90419 0.88197 0.77064 0.76635 0.75315 0.79019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.27 10.33 21.65 0.22 -55.05 16 2 C -0.06 -3.33 5.49 84.86 0.47 -2.86 16 3 Si 0.97 45.06 29.55 68.60 2.03 47.09 16 4 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 5 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 6 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 7 C -0.23 -12.52 10.29 84.03 0.86 -11.65 16 8 H 0.08 4.09 7.83 -2.91 -0.02 4.06 16 9 N -0.62 -29.67 2.91 -667.15 -1.94 -31.61 16 10 C 0.19 8.81 5.19 86.79 0.45 9.26 16 11 C -0.14 -4.67 5.98 31.61 0.19 -4.48 16 12 C 0.14 4.56 2.43 46.13 0.11 4.67 16 13 H 0.09 3.14 4.75 -2.39 -0.01 3.13 16 14 C 0.15 5.72 3.60 45.06 0.16 5.88 16 15 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 16 C -0.12 -3.98 5.11 30.51 0.16 -3.83 16 17 C -0.12 -2.96 6.09 30.66 0.19 -2.77 16 18 C 0.11 2.80 6.15 86.50 0.53 3.33 16 19 N -0.58 -16.55 2.73 -799.23 -2.18 -18.73 16 20 C 0.60 18.11 7.51 86.48 0.65 18.76 16 21 O -0.57 -19.02 16.44 -4.29 -0.07 -19.09 16 22 C -0.29 -8.38 5.07 -19.95 -0.10 -8.48 16 23 C 0.12 3.25 9.57 85.35 0.82 4.07 16 24 N -0.32 -9.14 12.60 -56.59 -0.71 -9.85 16 25 N -0.25 -6.20 3.91 -187.15 -0.73 -6.93 16 26 C 0.07 1.01 11.24 83.31 0.94 1.94 16 27 C 0.03 0.42 11.07 83.80 0.93 1.35 16 28 N -0.45 -8.65 10.44 -195.86 -2.05 -10.69 16 29 C 0.15 3.32 11.31 85.22 0.96 4.29 16 30 C 0.08 2.04 6.81 39.39 0.27 2.31 16 31 H 0.25 14.03 8.31 -92.70 -0.77 13.26 16 32 H 0.02 0.97 7.30 -2.39 -0.02 0.96 16 33 H 0.01 0.42 7.60 -2.39 -0.02 0.40 16 34 H 0.08 2.45 7.06 -2.39 -0.02 2.44 16 35 H 0.08 2.44 6.85 -2.39 -0.02 2.42 16 36 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 37 H 0.05 1.87 7.13 -2.38 -0.02 1.85 16 38 H 0.10 1.92 8.14 -2.38 -0.02 1.90 16 39 H 0.06 1.61 8.14 -2.38 -0.02 1.59 16 40 H 0.08 1.81 7.55 -2.39 -0.02 1.79 16 41 H 0.10 2.40 6.97 -2.39 -0.02 2.39 16 42 H 0.21 5.23 6.48 -2.91 -0.02 5.22 16 43 H 0.22 1.64 8.06 -2.92 -0.02 1.62 16 44 H 0.23 0.81 8.06 -2.91 -0.02 0.79 16 45 H 0.19 3.91 8.06 -2.91 -0.02 3.89 16 Total: -1.00 -72.10 357.73 3.17 -68.92 By element: Atomic # 1 Polarization: 13.15 SS G_CDS: 1.03 Total: 14.17 kcal Atomic # 6 Polarization: 14.20 SS G_CDS: 7.58 Total: 21.78 kcal Atomic # 7 Polarization: -125.48 SS G_CDS: -7.39 Total: -132.87 kcal Atomic # 8 Polarization: -19.02 SS G_CDS: -0.07 Total: -19.09 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.09 kcal Total: -72.10 3.17 -68.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049523405.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.264 kcal (2) G-P(sol) polarization free energy of solvation -72.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.921 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds