Wall clock time and date at job start Sat Apr 11 2020 06:20:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86800 * 120.00089 * 2 1 4 4 H 1.48496 * 109.47406 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.46887 * 299.99492 * 3 2 1 6 6 H 1.48500 * 109.47535 * 59.99535 * 3 2 1 7 7 C 1.38816 * 120.00226 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00266 * 179.97438 * 7 2 1 9 9 N 1.36937 * 119.99751 * 359.97438 * 7 2 1 10 10 C 1.46006 * 125.65204 * 0.23877 * 9 7 2 11 11 C 1.54571 * 107.33423 * 177.30208 * 10 9 7 12 12 C 1.54420 * 102.44697 * 338.32438 * 11 10 9 13 13 H 1.09005 * 110.71460 * 279.43545 * 12 11 10 14 14 C 1.48212 * 125.76927 * 179.97438 * 9 7 2 15 15 H 1.09003 * 112.29907 * 326.54983 * 14 9 7 16 16 C 1.53007 * 107.11325 * 89.14235 * 14 9 7 17 17 C 1.52732 * 110.80298 * 168.06896 * 16 14 9 18 18 C 1.53458 * 108.44392 * 296.23135 * 17 16 14 19 19 N 1.45118 * 111.60618 * 156.57684 * 12 11 10 20 20 C 1.34784 * 119.57409 * 111.35111 * 19 12 11 21 21 O 1.21597 * 119.99989 * 7.29558 * 20 19 12 22 22 C 1.47580 * 119.99820 * 187.29351 * 20 19 12 23 23 C 1.36477 * 125.91692 * 187.78306 * 22 20 19 24 24 N 1.36194 * 107.01475 * 179.97438 * 23 22 20 25 25 C 1.36668 * 132.45510 * 179.97438 * 24 23 22 26 26 C 1.35482 * 119.10310 * 179.97438 * 25 24 23 27 27 C 1.40305 * 119.35993 * 359.97438 * 26 25 24 28 28 N 1.31138 * 120.41023 * 0.02562 * 27 26 25 29 29 C 1.34289 * 120.94732 * 359.97438 * 28 27 26 30 30 N 1.32209 * 131.65278 * 179.68833 * 29 28 27 31 31 H 0.97002 * 119.99771 * 0.02562 * 1 2 3 32 32 H 1.09002 * 109.85331 * 57.86787 * 10 9 7 33 33 H 1.08999 * 109.84055 * 296.74288 * 10 9 7 34 34 H 1.08993 * 110.81287 * 220.08223 * 11 10 9 35 35 H 1.09002 * 110.97407 * 96.63283 * 11 10 9 36 36 H 1.09001 * 109.21300 * 47.72651 * 16 14 9 37 37 H 1.09006 * 109.17684 * 288.38829 * 16 14 9 38 38 H 1.09001 * 109.64142 * 176.54362 * 17 16 14 39 39 H 1.08998 * 109.81366 * 56.02496 * 17 16 14 40 40 H 1.08994 * 109.83383 * 298.55798 * 18 17 16 41 41 H 1.09001 * 109.89044 * 177.63272 * 18 17 16 42 42 H 1.07993 * 126.49651 * 359.97438 * 23 22 20 43 43 H 1.08000 * 120.44844 * 359.97438 * 25 24 23 44 44 H 1.07996 * 120.31928 * 180.02562 * 26 25 24 45 45 H 1.08002 * 119.79069 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8914 2.3966 1.2124 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3256 -2.3881 0.0016 10 6 -0.1273 -2.5319 -0.0027 11 6 -0.4403 -4.0441 -0.0690 12 6 0.8638 -4.6285 -0.6541 13 1 0.8901 -4.5046 -1.7368 14 6 1.9339 -3.7396 0.0017 15 1 2.8705 -3.7717 -0.5549 16 6 2.1398 -4.1406 1.4639 17 6 2.4856 -5.6240 1.5761 18 6 1.2886 -6.4411 1.0716 19 7 1.0224 -6.0297 -0.3115 20 6 0.9297 -6.9653 -1.2774 21 8 0.8475 -6.6295 -2.4432 22 6 0.9280 -8.3971 -0.9199 23 6 0.9901 -9.4412 -1.7967 24 7 0.9640 -10.5846 -1.0572 25 6 0.9998 -11.9068 -1.4013 26 6 0.9586 -12.8436 -0.4233 27 6 0.8808 -12.4359 0.9169 28 7 0.8478 -11.1609 1.2221 29 6 0.8879 -10.2204 0.2645 30 7 0.8620 -8.9001 0.3280 31 1 -0.4850 0.8401 -0.0004 32 1 -0.5466 -2.0281 -0.8736 33 1 -0.5439 -2.1067 0.9104 34 1 -1.2830 -4.2365 -0.7329 35 1 -0.6330 -4.4466 0.9255 36 1 1.2250 -3.9423 2.0224 37 1 2.9527 -3.5498 1.8861 38 1 2.6881 -5.8753 2.6172 39 1 3.3629 -5.8458 0.9685 40 1 0.4154 -6.2395 1.6920 41 1 1.5262 -7.5044 1.1020 42 1 1.0487 -9.3736 -2.8729 43 1 1.0601 -12.2009 -2.4387 44 1 0.9861 -13.8939 -0.6730 45 1 0.8472 -13.1768 1.7020 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049572596.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:30 Heat of formation + Delta-G solvation = 128.318841 kcal Electronic energy + Delta-G solvation = -29887.880554 eV Core-core repulsion = 25908.825283 eV Total energy + Delta-G solvation = -3979.055271 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.45734 -40.26221 -38.68215 -37.66018 -35.38284 -34.88234 -32.31085 -32.22156 -31.41661 -29.78309 -28.93284 -28.13463 -25.97499 -24.56090 -24.21326 -23.73895 -22.87443 -21.79418 -20.31459 -19.88871 -18.87227 -18.16487 -17.88767 -17.01448 -16.82976 -16.77104 -16.16880 -15.55228 -14.86046 -14.80965 -14.70914 -14.54188 -14.18119 -13.78510 -13.67114 -13.44268 -13.27448 -12.88289 -12.72214 -12.38634 -12.23666 -11.94872 -11.90548 -11.36940 -11.13972 -10.87339 -10.76497 -10.68038 -10.55178 -10.44430 -10.13634 -10.01442 -9.93119 -9.65034 -9.59349 -9.50669 -9.32046 -8.64552 -8.54681 -8.13171 -6.78383 -5.64790 -2.98762 -0.03292 0.55914 1.73623 1.84821 2.96132 3.00779 3.26611 3.44489 3.46032 3.49928 3.52330 3.82220 3.94209 4.19865 4.50028 4.54658 4.65733 4.85427 5.04120 5.09475 5.26744 5.43387 5.46314 5.53951 5.57636 5.66967 5.70955 5.77813 5.84631 5.98680 6.01923 6.18996 6.26629 6.30939 6.41221 6.48113 6.52045 6.62823 6.72518 6.87551 7.06361 7.11190 7.18049 7.40119 7.63204 7.69014 7.73182 7.90088 8.30086 8.35408 9.28793 9.87422 10.53536 11.46169 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.031341 B = 0.002516 C = 0.002442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.177328 B =11126.352084 C =11461.022182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.009 4.009 3 Si 0.911 3.089 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.224 4.224 8 H 0.078 0.922 9 N -0.597 5.597 10 C 0.182 3.818 11 C -0.151 4.151 12 C 0.127 3.873 13 H 0.103 0.897 14 C 0.157 3.843 15 H 0.059 0.941 16 C -0.129 4.129 17 C -0.132 4.132 18 C 0.083 3.917 19 N -0.569 5.569 20 C 0.591 3.409 21 O -0.538 6.538 22 C 0.034 3.966 23 C -0.016 4.016 24 N -0.402 5.402 25 C 0.114 3.886 26 C -0.205 4.205 27 C 0.173 3.827 28 N -0.431 5.431 29 C 0.374 3.626 30 N -0.436 5.436 31 H 0.251 0.749 32 H 0.050 0.950 33 H 0.041 0.959 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.063 0.937 37 H 0.058 0.942 38 H 0.067 0.933 39 H 0.058 0.942 40 H 0.065 0.935 41 H 0.132 0.868 42 H 0.201 0.799 43 H 0.178 0.822 44 H 0.167 0.833 45 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.680 -30.278 -0.683 30.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.205 4.205 3 Si 0.742 3.258 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.352 4.352 8 H 0.096 0.904 9 N -0.321 5.321 10 C 0.057 3.943 11 C -0.190 4.190 12 C 0.023 3.977 13 H 0.121 0.879 14 C 0.049 3.951 15 H 0.077 0.923 16 C -0.170 4.170 17 C -0.171 4.171 18 C -0.040 4.040 19 N -0.298 5.298 20 C 0.376 3.624 21 O -0.415 6.415 22 C -0.099 4.099 23 C -0.150 4.150 24 N -0.079 5.079 25 C -0.017 4.017 26 C -0.228 4.228 27 C -0.016 4.016 28 N -0.143 5.143 29 C 0.026 3.974 30 N -0.160 5.160 31 H 0.062 0.938 32 H 0.068 0.932 33 H 0.059 0.941 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.081 0.919 37 H 0.077 0.923 38 H 0.086 0.914 39 H 0.077 0.923 40 H 0.083 0.917 41 H 0.149 0.851 42 H 0.218 0.782 43 H 0.195 0.805 44 H 0.184 0.816 45 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 1.468 -28.742 0.202 28.781 hybrid contribution 0.452 0.094 -1.373 1.449 sum 1.920 -28.648 -1.171 28.736 Atomic orbital electron populations 1.69981 1.04840 1.24843 1.57213 1.24802 0.95713 0.97603 1.02371 0.86046 0.78704 0.83862 0.77161 1.20546 1.21820 1.21841 1.19088 0.90481 0.82190 1.43445 0.90392 1.44448 1.01590 0.99347 1.86695 1.20976 0.84438 0.87695 1.01191 1.23141 0.96226 0.99715 0.99966 1.21784 0.96927 0.77825 1.01150 0.87935 1.21254 0.94511 0.86000 0.93374 0.92293 1.22112 1.01840 0.93458 0.99550 1.21931 0.97717 0.96833 1.00631 1.22713 0.97861 1.02593 0.80793 1.47443 1.67622 1.06243 1.08531 1.16943 0.77541 0.82634 0.85244 1.90803 1.51527 1.81024 1.18189 1.20868 1.05547 0.94994 0.88476 1.22619 1.11098 0.82238 0.99081 1.43915 1.46430 1.06330 1.11242 1.22285 0.96757 0.80470 1.02232 1.21863 1.06307 1.01389 0.93264 1.23395 0.90641 0.91547 0.96000 1.67999 1.14464 1.00713 1.31088 1.22211 1.04818 0.92172 0.78197 1.70836 1.21911 1.01827 1.21423 0.93843 0.93158 0.94112 0.92124 0.92086 0.91869 0.92328 0.91440 0.92299 0.91667 0.85107 0.78177 0.80499 0.81578 0.79864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.55 10.31 55.49 0.57 -26.98 16 2 C -0.01 -0.25 5.48 -17.43 -0.10 -0.35 16 3 Si 0.91 22.57 29.55 -169.99 -5.02 17.55 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 6 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 7 C -0.22 -6.31 10.29 -15.06 -0.15 -6.47 16 8 H 0.08 2.14 7.83 -52.49 -0.41 1.73 16 9 N -0.60 -15.48 2.88 -163.31 -0.47 -15.95 16 10 C 0.18 4.60 5.15 -3.48 -0.02 4.58 16 11 C -0.15 -3.13 6.08 -25.16 -0.15 -3.28 16 12 C 0.13 2.58 3.12 -67.51 -0.21 2.36 16 13 H 0.10 2.27 6.93 -51.93 -0.36 1.91 16 14 C 0.16 3.40 3.58 -66.57 -0.24 3.16 16 15 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 16 C -0.13 -2.48 5.10 -26.86 -0.14 -2.62 16 17 C -0.13 -2.08 6.10 -26.63 -0.16 -2.24 16 18 C 0.08 1.31 5.74 -3.68 -0.02 1.29 16 19 N -0.57 -10.09 2.73 -166.52 -0.46 -10.55 16 20 C 0.59 10.28 7.63 -12.45 -0.09 10.18 16 21 O -0.54 -10.56 16.21 5.28 0.09 -10.47 16 22 C 0.03 0.50 6.59 -83.43 -0.55 -0.05 16 23 C -0.02 -0.17 11.48 -16.25 -0.19 -0.36 16 24 N -0.40 -3.78 2.93 -64.13 -0.19 -3.96 16 25 C 0.11 0.53 11.05 -16.38 -0.18 0.35 16 26 C -0.21 -0.60 10.06 -39.79 -0.40 -1.00 16 27 C 0.17 0.89 11.27 -17.07 -0.19 0.69 16 28 N -0.43 -4.48 10.48 -13.67 -0.14 -4.62 16 29 C 0.37 4.60 8.90 -322.40 -2.87 1.73 16 30 N -0.44 -6.35 7.74 -11.03 -0.09 -6.43 16 31 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 32 H 0.05 1.41 7.28 -51.93 -0.38 1.03 16 33 H 0.04 1.12 7.58 -51.93 -0.39 0.73 16 34 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 35 H 0.06 1.20 6.84 -51.93 -0.35 0.84 16 36 H 0.06 1.29 7.14 -51.93 -0.37 0.92 16 37 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 38 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 40 H 0.07 1.05 7.54 -51.93 -0.39 0.66 16 41 H 0.13 2.03 4.13 -63.49 -0.26 1.77 16 42 H 0.20 1.66 8.06 -52.49 -0.42 1.24 16 43 H 0.18 0.14 8.06 -52.49 -0.42 -0.28 16 44 H 0.17 -0.18 8.06 -52.49 -0.42 -0.60 16 45 H 0.18 0.21 8.06 -52.49 -0.42 -0.21 16 LS Contribution 358.31 15.07 5.40 5.40 Total: -1.00 -36.17 358.31 -11.84 -48.01 By element: Atomic # 1 Polarization: 5.87 SS G_CDS: -5.86 Total: 0.01 kcal Atomic # 6 Polarization: 13.66 SS G_CDS: -5.67 Total: 7.99 kcal Atomic # 7 Polarization: -67.72 SS G_CDS: -0.77 Total: -68.49 kcal Atomic # 8 Polarization: -10.56 SS G_CDS: 0.09 Total: -10.47 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.02 Total: 17.55 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -36.17 -11.84 -48.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049572596.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 176.325 kcal (2) G-P(sol) polarization free energy of solvation -36.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 140.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.006 kcal (6) G-S(sol) free energy of system = (1) + (5) 128.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds