Wall clock time and date at job start Sat Apr 11 2020 06:20:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86790 * 120.00362 * 2 1 4 4 H 1.48499 * 109.47097 * 0.02562 * 3 2 1 5 5 H 1.48505 * 109.47272 * 240.00364 * 3 2 1 6 6 H 1.48501 * 109.47386 * 120.00374 * 3 2 1 7 7 C 1.38819 * 119.99666 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99792 * 3.82646 * 7 2 1 9 9 N 1.36928 * 119.99978 * 183.83032 * 7 2 1 10 10 C 1.48386 * 126.56376 * 18.52807 * 9 7 2 11 11 C 1.55523 * 106.94925 * 174.39620 * 10 9 7 12 12 C 1.53431 * 101.75917 * 337.73284 * 11 10 9 13 13 H 1.09001 * 111.75574 * 281.57150 * 12 11 10 14 14 C 1.45021 * 126.56270 * 198.84754 * 9 7 2 15 15 H 1.09002 * 108.70557 * 96.45667 * 14 9 7 16 16 C 1.51084 * 119.18986 * 331.18245 * 14 9 7 17 17 C 1.53866 * 107.34017 * 176.10073 * 16 14 9 18 18 C 1.52711 * 111.52677 * 56.91731 * 17 16 14 19 19 N 1.45719 * 116.37165 * 152.52203 * 12 11 10 20 20 C 1.34778 * 122.22879 * 9.88030 * 19 12 11 21 21 O 1.21589 * 119.99899 * 353.23298 * 20 19 12 22 22 C 1.47579 * 119.99983 * 173.23146 * 20 19 12 23 23 C 1.36477 * 125.91842 * 172.15033 * 22 20 19 24 24 N 1.36192 * 107.01199 * 179.84446 * 23 22 20 25 25 C 1.36677 * 132.44863 * 180.08828 * 24 23 22 26 26 C 1.35473 * 119.10176 * 180.35044 * 25 24 23 27 27 C 1.40299 * 119.36179 * 359.97438 * 26 25 24 28 28 N 1.31137 * 120.41220 * 0.02562 * 27 26 25 29 29 C 1.34288 * 120.94442 * 359.97438 * 28 27 26 30 30 N 1.32209 * 131.65427 * 179.97438 * 29 28 27 31 31 H 0.96993 * 120.00233 * 174.84264 * 1 2 3 32 32 H 1.08997 * 109.96003 * 293.89981 * 10 9 7 33 33 H 1.09003 * 109.95795 * 55.13727 * 10 9 7 34 34 H 1.09003 * 111.11151 * 219.53323 * 11 10 9 35 35 H 1.09003 * 110.77682 * 95.78394 * 11 10 9 36 36 H 1.09009 * 109.87917 * 295.55384 * 16 14 9 37 37 H 1.08993 * 109.88784 * 56.63839 * 16 14 9 38 38 H 1.09004 * 109.07552 * 177.45086 * 17 16 14 39 39 H 1.09000 * 109.06846 * 296.46373 * 17 16 14 40 40 H 1.09010 * 109.16082 * 71.88505 * 18 17 16 41 41 H 1.09001 * 109.16429 * 191.11528 * 18 17 16 42 42 H 1.08003 * 126.49319 * 359.97438 * 23 22 20 43 43 H 1.08002 * 120.44742 * 0.36273 * 25 24 23 44 44 H 1.08006 * 120.31608 * 180.02562 * 26 25 24 45 45 H 1.08002 * 119.79504 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 1.2854 2.7464 0.0006 5 1 3.1040 1.6963 -1.2126 6 1 3.1042 1.6962 1.2124 7 6 2.0103 -1.2022 -0.0005 8 1 1.4720 -2.1365 -0.0634 9 7 3.3773 -1.2037 0.0787 10 6 4.2368 -0.0880 0.5459 11 6 5.6957 -0.6255 0.5854 12 6 5.4685 -2.1396 0.6853 13 1 5.2052 -2.4427 1.6987 14 6 4.2625 -2.2936 -0.2841 15 1 4.6235 -2.1277 -1.2991 16 6 3.7644 -3.7156 -0.1727 17 6 4.8744 -4.6339 -0.7132 18 6 6.1882 -4.4263 0.0370 19 7 6.5197 -2.9892 0.1407 20 6 7.7144 -2.4975 -0.2433 21 8 7.9015 -1.2962 -0.2568 22 6 8.7955 -3.4173 -0.6474 23 6 9.9912 -3.0552 -1.1967 24 7 10.6931 -4.2018 -1.4145 25 6 11.9342 -4.4388 -1.9357 26 6 12.3733 -5.7163 -2.0372 27 6 11.5464 -6.7643 -1.6056 28 7 10.3593 -6.5117 -1.1089 29 6 9.9096 -5.2509 -1.0016 30 7 8.7709 -4.7602 -0.5429 31 1 -0.4850 -0.8366 -0.0755 32 1 4.1659 0.7513 -0.1459 33 1 3.9301 0.2251 1.5440 34 1 6.2281 -0.2521 1.4602 35 1 6.2268 -0.3701 -0.3315 36 1 3.5598 -3.9560 0.8707 37 1 2.8591 -3.8390 -0.7669 38 1 4.5622 -5.6726 -0.6039 39 1 5.0313 -4.4189 -1.7702 40 1 6.0982 -4.8459 1.0391 41 1 6.9891 -4.9399 -0.4950 42 1 10.3195 -2.0498 -1.4151 43 1 12.5565 -3.6185 -2.2620 44 1 13.3509 -5.9260 -2.4457 45 1 11.8895 -7.7854 -1.6830 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049572598.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:33 Heat of formation + Delta-G solvation = 141.516504 kcal Electronic energy + Delta-G solvation = -30089.501890 eV Core-core repulsion = 26111.018913 eV Total energy + Delta-G solvation = -3978.482977 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.49561 -40.41265 -38.75690 -37.64223 -35.66864 -35.02845 -32.71209 -32.33602 -31.49676 -29.88323 -29.24210 -28.55969 -26.04182 -24.69535 -24.05530 -23.68706 -22.83419 -21.59125 -21.18938 -19.77426 -19.35740 -18.33859 -18.13753 -17.20582 -16.87311 -16.80681 -15.97211 -15.71958 -15.19469 -14.95962 -14.78410 -14.61692 -14.33967 -14.05072 -13.98671 -13.55368 -13.33852 -13.08032 -12.84007 -12.74346 -12.35086 -12.19864 -12.07802 -11.83554 -11.40203 -11.37329 -10.77854 -10.68045 -10.58980 -10.45322 -10.23236 -10.05852 -9.79316 -9.62611 -9.30685 -9.02043 -8.96757 -8.69617 -8.65180 -8.24248 -6.94405 -6.17941 -3.18978 -0.07698 0.51616 1.68444 1.80209 2.89132 2.95323 3.15475 3.40521 3.51522 3.57522 3.77163 3.78826 3.88631 4.14208 4.44008 4.56718 4.68997 4.78111 4.87170 4.99568 5.05299 5.27455 5.31060 5.38656 5.42420 5.52632 5.58876 5.64993 5.69033 5.75294 5.94393 5.96278 6.00304 6.04865 6.22982 6.32048 6.36293 6.43588 6.58644 6.60423 6.69376 6.78465 6.99711 7.01571 7.11612 7.34828 7.62806 7.82992 8.26012 8.41111 9.11648 9.66573 10.35387 11.28942 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.025949 B = 0.002848 C = 0.002632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.782673 B = 9829.943835 C =10634.121383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.024 4.024 3 Si 1.078 2.922 4 H -0.303 1.303 5 H -0.297 1.297 6 H -0.284 1.284 7 C -0.314 4.314 8 H 0.077 0.923 9 N -0.603 5.603 10 C 0.098 3.902 11 C -0.120 4.120 12 C 0.114 3.886 13 H 0.086 0.914 14 C 0.160 3.840 15 H 0.022 0.978 16 C -0.114 4.114 17 C -0.128 4.128 18 C 0.089 3.911 19 N -0.578 5.578 20 C 0.600 3.400 21 O -0.529 6.529 22 C 0.032 3.968 23 C -0.015 4.015 24 N -0.402 5.402 25 C 0.114 3.886 26 C -0.205 4.205 27 C 0.174 3.826 28 N -0.432 5.432 29 C 0.375 3.625 30 N -0.439 5.439 31 H 0.259 0.741 32 H 0.037 0.963 33 H 0.051 0.949 34 H 0.069 0.931 35 H 0.097 0.903 36 H 0.062 0.938 37 H 0.068 0.932 38 H 0.073 0.927 39 H 0.060 0.940 40 H 0.063 0.937 41 H 0.128 0.872 42 H 0.202 0.798 43 H 0.178 0.822 44 H 0.167 0.833 45 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.870 -13.664 -4.399 33.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.223 4.223 3 Si 0.913 3.087 4 H -0.232 1.232 5 H -0.226 1.226 6 H -0.211 1.211 7 C -0.441 4.441 8 H 0.095 0.905 9 N -0.329 5.329 10 C -0.027 4.027 11 C -0.158 4.158 12 C 0.010 3.990 13 H 0.104 0.896 14 C 0.051 3.949 15 H 0.040 0.960 16 C -0.152 4.152 17 C -0.166 4.166 18 C -0.034 4.034 19 N -0.308 5.308 20 C 0.386 3.614 21 O -0.406 6.406 22 C -0.101 4.101 23 C -0.150 4.150 24 N -0.079 5.079 25 C -0.017 4.017 26 C -0.228 4.228 27 C -0.015 4.015 28 N -0.143 5.143 29 C 0.027 3.973 30 N -0.163 5.163 31 H 0.069 0.931 32 H 0.054 0.946 33 H 0.069 0.931 34 H 0.087 0.913 35 H 0.116 0.884 36 H 0.081 0.919 37 H 0.086 0.914 38 H 0.092 0.908 39 H 0.079 0.921 40 H 0.082 0.918 41 H 0.145 0.855 42 H 0.218 0.782 43 H 0.195 0.805 44 H 0.185 0.815 45 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 28.226 -12.299 -3.645 31.004 hybrid contribution 1.410 -0.806 -0.722 1.778 sum 29.636 -13.105 -4.367 32.697 Atomic orbital electron populations 1.70920 1.05559 1.29316 1.51815 1.25907 0.96604 1.01193 0.98569 0.83756 0.72888 0.75605 0.76501 1.23172 1.22569 1.21093 1.20127 0.78927 0.95185 1.49901 0.90494 1.44364 1.02121 1.10693 1.75754 1.22697 0.89642 0.92247 0.98081 1.22786 0.96301 0.92674 1.04014 1.22471 0.87106 0.91725 0.97732 0.89579 1.20736 0.89507 0.89393 0.95232 0.96023 1.21399 0.97826 0.94703 1.01309 1.21914 0.94673 0.99923 1.00137 1.22467 0.99259 0.79812 1.01819 1.47752 1.12651 1.09796 1.60596 1.16818 0.80800 0.86108 0.77717 1.90788 1.81221 1.13767 1.54823 1.20932 0.95540 0.90081 1.03568 1.22626 0.93326 0.90784 1.08229 1.43905 1.13400 1.10298 1.40322 1.22291 0.84683 0.99889 0.94850 1.21868 1.03724 0.91473 1.05726 1.23399 0.87461 1.00840 0.89816 1.67997 1.15667 1.14806 1.15867 1.22136 0.89274 0.84325 1.01581 1.70772 1.15938 1.07602 1.22028 0.93052 0.94580 0.93059 0.91278 0.88446 0.91884 0.91376 0.90810 0.92147 0.91828 0.85467 0.78152 0.80464 0.81537 0.79835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -30.14 13.70 55.49 0.76 -29.37 16 2 C -0.02 -0.72 5.50 -17.43 -0.10 -0.82 16 3 Si 1.08 28.21 24.59 -169.99 -4.18 24.03 16 4 H -0.30 -8.05 7.11 56.52 0.40 -7.65 16 5 H -0.30 -7.59 6.69 56.52 0.38 -7.21 16 6 H -0.28 -6.82 5.36 56.52 0.30 -6.51 16 7 C -0.31 -9.20 10.29 -15.06 -0.16 -9.35 16 8 H 0.08 2.35 7.58 -52.48 -0.40 1.95 16 9 N -0.60 -15.47 3.24 -163.24 -0.53 -16.00 16 10 C 0.10 2.30 4.69 -1.66 -0.01 2.29 16 11 C -0.12 -2.40 5.13 -25.17 -0.13 -2.53 16 12 C 0.11 2.18 3.33 -66.80 -0.22 1.96 16 13 H 0.09 1.64 8.14 -51.93 -0.42 1.22 16 14 C 0.16 3.47 2.58 -68.36 -0.18 3.29 16 15 H 0.02 0.52 8.04 -51.93 -0.42 0.10 16 16 C -0.11 -2.14 5.38 -27.24 -0.15 -2.29 16 17 C -0.13 -1.93 5.92 -26.43 -0.16 -2.09 16 18 C 0.09 1.32 6.07 -3.45 -0.02 1.30 16 19 N -0.58 -9.80 2.91 -165.19 -0.48 -10.29 16 20 C 0.60 9.97 7.71 -12.45 -0.10 9.87 16 21 O -0.53 -9.67 13.60 5.29 0.07 -9.59 16 22 C 0.03 0.45 6.67 -83.43 -0.56 -0.11 16 23 C -0.01 -0.16 11.48 -16.25 -0.19 -0.34 16 24 N -0.40 -3.67 2.93 -64.13 -0.19 -3.85 16 25 C 0.11 0.50 11.05 -16.38 -0.18 0.32 16 26 C -0.20 -0.55 10.06 -39.79 -0.40 -0.95 16 27 C 0.17 0.84 11.27 -17.07 -0.19 0.65 16 28 N -0.43 -4.35 10.48 -13.67 -0.14 -4.49 16 29 C 0.38 4.49 8.90 -322.42 -2.87 1.62 16 30 N -0.44 -6.19 7.89 -11.03 -0.09 -6.28 16 31 H 0.26 8.26 8.73 -40.82 -0.36 7.90 16 32 H 0.04 0.89 4.09 -51.93 -0.21 0.68 16 33 H 0.05 1.23 6.52 -51.93 -0.34 0.89 16 34 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 35 H 0.10 2.03 5.99 -51.93 -0.31 1.72 16 36 H 0.06 1.18 8.12 -51.92 -0.42 0.75 16 37 H 0.07 1.37 7.84 -51.93 -0.41 0.96 16 38 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.06 0.90 8.14 -51.92 -0.42 0.48 16 41 H 0.13 1.88 4.35 -52.74 -0.23 1.65 16 42 H 0.20 1.60 8.06 -52.48 -0.42 1.17 16 43 H 0.18 0.11 8.06 -52.49 -0.42 -0.31 16 44 H 0.17 -0.21 8.06 -52.48 -0.42 -0.64 16 45 H 0.18 0.16 8.06 -52.49 -0.42 -0.26 16 LS Contribution 348.73 15.07 5.26 5.26 Total: -1.00 -38.05 348.73 -10.93 -48.98 By element: Atomic # 1 Polarization: 4.60 SS G_CDS: -5.81 Total: -1.21 kcal Atomic # 6 Polarization: 8.42 SS G_CDS: -5.59 Total: 2.83 kcal Atomic # 7 Polarization: -69.62 SS G_CDS: -0.67 Total: -70.29 kcal Atomic # 8 Polarization: -9.67 SS G_CDS: 0.07 Total: -9.59 kcal Atomic # 14 Polarization: 28.21 SS G_CDS: -4.18 Total: 24.03 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -38.05 -10.93 -48.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049572598.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 190.498 kcal (2) G-P(sol) polarization free energy of solvation -38.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 152.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.981 kcal (6) G-S(sol) free energy of system = (1) + (5) 141.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds