Wall clock time and date at job start Sat Apr 11 2020 06:20:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86799 * 120.00139 * 2 1 4 4 H 1.48498 * 109.46952 * 240.00113 * 3 2 1 5 5 H 1.48501 * 109.46899 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47261 * 120.00038 * 3 2 1 7 7 C 1.38816 * 119.99834 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99832 * 180.02562 * 7 2 1 9 9 N 1.36937 * 120.00087 * 359.97438 * 7 2 1 10 10 C 1.48381 * 126.56018 * 359.97438 * 9 7 2 11 11 C 1.55476 * 106.97528 * 185.54022 * 10 9 7 12 12 C 1.53432 * 101.67021 * 22.60189 * 11 10 9 13 13 H 1.08994 * 111.15161 * 78.81478 * 12 11 10 14 14 C 1.45422 * 126.02373 * 180.87294 * 9 7 2 15 15 H 1.08993 * 107.61099 * 264.00176 * 14 9 7 16 16 C 1.51084 * 120.14232 * 29.03305 * 14 9 7 17 17 C 1.53874 * 107.39718 * 184.07992 * 16 14 9 18 18 C 1.52717 * 111.52382 * 303.03734 * 17 16 14 19 19 N 1.45721 * 116.36713 * 207.28536 * 12 11 10 20 20 C 1.34780 * 122.23279 * 350.98922 * 19 12 11 21 21 O 1.21597 * 119.99479 * 354.41486 * 20 19 12 22 22 C 1.47577 * 120.00636 * 174.42128 * 20 19 12 23 23 C 1.36468 * 125.92269 * 185.52909 * 22 20 19 24 24 N 1.36186 * 107.01639 * 179.97438 * 23 22 20 25 25 C 1.36673 * 132.44745 * 180.02562 * 24 23 22 26 26 C 1.35475 * 119.10504 * 179.97438 * 25 24 23 27 27 C 1.40302 * 119.35765 * 0.02562 * 26 25 24 28 28 N 1.31140 * 120.41060 * 359.97438 * 27 26 25 29 29 C 1.34284 * 120.95023 * 0.02562 * 28 27 26 30 30 N 1.32211 * 131.66481 * 180.33475 * 29 28 27 31 31 H 0.97001 * 120.00289 * 359.97438 * 1 2 3 32 32 H 1.09006 * 109.96040 * 66.16297 * 10 9 7 33 33 H 1.09001 * 109.99387 * 304.93847 * 10 9 7 34 34 H 1.08995 * 110.98570 * 264.50096 * 11 10 9 35 35 H 1.08999 * 110.98840 * 140.69802 * 11 10 9 36 36 H 1.08996 * 109.88317 * 64.58307 * 16 14 9 37 37 H 1.08997 * 109.88161 * 303.56757 * 16 14 9 38 38 H 1.08994 * 109.07324 * 63.56583 * 17 16 14 39 39 H 1.09002 * 109.06975 * 182.57935 * 17 16 14 40 40 H 1.08996 * 109.15770 * 168.93846 * 18 17 16 41 41 H 1.08999 * 109.16029 * 288.17456 * 18 17 16 42 42 H 1.08002 * 126.49627 * 359.96020 * 23 22 20 43 43 H 1.08000 * 120.44775 * 0.02562 * 25 24 23 44 44 H 1.07999 * 120.32310 * 180.02562 * 26 25 24 45 45 H 1.07994 * 119.79437 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6963 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0901 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1486 -2.5576 0.0005 11 6 -0.4303 -4.0799 0.1436 12 6 0.8716 -4.5776 0.7850 13 1 0.8901 -4.3646 1.8537 14 6 1.9163 -3.7168 0.0169 15 1 1.9644 -4.0698 -1.0132 16 6 3.2602 -3.9410 0.6699 17 6 3.6485 -5.4106 0.4305 18 6 2.5852 -6.3658 0.9682 19 7 1.2346 -5.9639 0.5206 20 6 0.3952 -6.8226 -0.0915 21 8 -0.7419 -6.4795 -0.3520 22 6 0.8561 -8.1791 -0.4456 23 6 0.1492 -9.1046 -1.1570 24 7 0.9338 -10.2130 -1.2592 25 6 0.7413 -11.4276 -1.8555 26 6 1.7254 -12.3565 -1.7914 27 6 2.9165 -12.0513 -1.1156 28 7 3.0777 -10.8785 -0.5513 29 6 2.1119 -9.9472 -0.6059 30 7 2.0495 -8.7165 -0.1269 31 1 -0.4850 0.8400 0.0004 32 1 -0.5663 -2.1883 -0.9362 33 1 -0.5852 -2.0178 0.8408 34 1 -0.5866 -4.5413 -0.8314 35 1 -1.2821 -4.2593 0.7997 36 1 3.1896 -3.7458 1.7399 37 1 4.0046 -3.2832 0.2214 38 1 3.7685 -5.5775 -0.6399 39 1 4.5951 -5.6149 0.9309 40 1 2.7957 -7.3736 0.6101 41 1 2.6167 -6.3596 2.0577 42 1 -0.8444 -8.9815 -1.5621 43 1 -0.1825 -11.6437 -2.3715 44 1 1.5944 -13.3226 -2.2560 45 1 3.7054 -12.7866 -1.0599 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049572599.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:36 Heat of formation + Delta-G solvation = 133.229998 kcal Electronic energy + Delta-G solvation = -30008.878493 eV Core-core repulsion = 26030.036185 eV Total energy + Delta-G solvation = -3978.842307 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.43183 -40.19438 -38.62318 -37.42950 -35.41392 -34.89351 -32.49064 -32.19944 -31.37156 -29.77778 -28.83938 -28.02588 -25.96166 -24.47832 -24.34770 -23.74624 -22.67367 -21.29390 -20.73036 -19.68323 -19.24408 -18.22201 -18.07776 -16.89561 -16.76991 -16.47686 -15.77262 -15.45213 -15.04291 -14.84538 -14.62401 -14.41026 -14.10084 -13.89492 -13.59574 -13.49471 -13.30347 -12.94311 -12.67499 -12.36114 -12.21205 -12.09175 -11.76694 -11.56191 -11.22469 -10.84652 -10.75938 -10.57168 -10.50478 -10.33799 -10.08126 -9.95674 -9.74081 -9.59342 -9.55037 -9.52855 -9.07996 -8.63883 -8.51665 -8.07487 -6.73950 -5.62052 -2.95620 -0.01655 0.58004 1.77845 1.86467 2.98480 3.02420 3.28278 3.46428 3.50365 3.51733 3.53659 3.83707 3.95545 4.20963 4.51260 4.57380 4.67323 4.86643 5.06185 5.11078 5.13328 5.39776 5.49021 5.56835 5.61119 5.67958 5.72438 5.78047 5.89866 5.97162 6.03469 6.19613 6.24746 6.32218 6.45818 6.54590 6.60060 6.68250 6.85158 6.90269 6.98851 7.13283 7.28823 7.41627 7.65669 7.72634 7.80946 7.91740 8.33158 8.42178 9.28095 9.91509 10.59625 11.50019 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.026422 B = 0.002686 C = 0.002519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.482926 B =10422.732241 C =11112.022251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.009 4.009 3 Si 0.910 3.090 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.224 4.224 8 H 0.078 0.922 9 N -0.593 5.593 10 C 0.175 3.825 11 C -0.129 4.129 12 C 0.115 3.885 13 H 0.081 0.919 14 C 0.159 3.841 15 H 0.018 0.982 16 C -0.116 4.116 17 C -0.124 4.124 18 C 0.071 3.929 19 N -0.576 5.576 20 C 0.596 3.404 21 O -0.528 6.528 22 C 0.037 3.963 23 C -0.016 4.016 24 N -0.401 5.401 25 C 0.114 3.886 26 C -0.206 4.206 27 C 0.173 3.827 28 N -0.433 5.433 29 C 0.376 3.624 30 N -0.440 5.440 31 H 0.252 0.748 32 H 0.040 0.960 33 H 0.056 0.944 34 H 0.078 0.922 35 H 0.063 0.937 36 H 0.062 0.938 37 H 0.064 0.936 38 H 0.059 0.941 39 H 0.070 0.930 40 H 0.144 0.856 41 H 0.059 0.941 42 H 0.202 0.798 43 H 0.178 0.822 44 H 0.167 0.833 45 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.887 -29.147 -3.183 29.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.205 4.205 3 Si 0.741 3.259 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.353 4.353 8 H 0.096 0.904 9 N -0.318 5.318 10 C 0.050 3.950 11 C -0.168 4.168 12 C 0.011 3.989 13 H 0.099 0.901 14 C 0.050 3.950 15 H 0.035 0.965 16 C -0.155 4.155 17 C -0.162 4.162 18 C -0.052 4.052 19 N -0.306 5.306 20 C 0.381 3.619 21 O -0.405 6.405 22 C -0.097 4.097 23 C -0.151 4.151 24 N -0.079 5.079 25 C -0.017 4.017 26 C -0.229 4.229 27 C -0.015 4.015 28 N -0.144 5.144 29 C 0.028 3.972 30 N -0.164 5.164 31 H 0.063 0.937 32 H 0.058 0.942 33 H 0.074 0.926 34 H 0.096 0.904 35 H 0.082 0.918 36 H 0.081 0.919 37 H 0.083 0.917 38 H 0.078 0.922 39 H 0.089 0.911 40 H 0.160 0.840 41 H 0.077 0.923 42 H 0.219 0.781 43 H 0.195 0.805 44 H 0.184 0.816 45 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 3.476 -27.805 -2.385 28.123 hybrid contribution -0.762 0.257 -0.839 1.162 sum 2.714 -27.548 -3.224 27.868 Atomic orbital electron populations 1.69936 1.04853 1.25065 1.57046 1.24798 0.95669 0.97560 1.02460 0.86231 0.78453 0.83435 0.77830 1.21266 1.21674 1.21229 1.18973 0.90342 0.82330 1.43612 0.90438 1.44229 1.01699 0.99377 1.86525 1.21722 0.83511 0.88681 1.01068 1.22936 0.94695 0.97975 1.01165 1.22510 0.98597 0.78317 0.99467 0.90121 1.20845 0.91467 0.87012 0.95685 0.96501 1.21443 0.98264 0.94746 1.01022 1.21842 0.97918 0.95086 1.01398 1.22789 0.80302 1.02956 0.99126 1.47839 1.15542 1.10932 1.56321 1.16805 0.84740 0.81791 0.78541 1.90822 1.18121 1.76132 1.55423 1.21010 0.90876 0.96475 1.01318 1.22621 0.99533 0.85121 1.07808 1.43893 1.16497 1.11396 1.36086 1.22290 1.01546 0.82757 0.95067 1.21857 0.94573 1.01576 1.04903 1.23389 0.96409 0.92222 0.89519 1.67994 1.25820 1.01030 1.19556 1.22193 0.83141 0.94099 0.97797 1.70511 1.18875 1.02909 1.24093 0.93748 0.94221 0.92592 0.90373 0.91841 0.91905 0.91685 0.92227 0.91111 0.83958 0.92309 0.78132 0.80478 0.81579 0.79876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.88 10.46 55.49 0.58 -27.30 16 2 C -0.01 -0.25 5.49 -17.43 -0.10 -0.35 16 3 Si 0.91 22.67 29.55 -169.99 -5.02 17.64 16 4 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 5 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 6 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 7 C -0.22 -6.39 9.95 -15.06 -0.15 -6.54 16 8 H 0.08 2.12 7.36 -52.49 -0.39 1.73 16 9 N -0.59 -15.82 3.36 -162.90 -0.55 -16.37 16 10 C 0.17 4.54 5.48 -1.69 -0.01 4.53 16 11 C -0.13 -2.85 4.98 -25.19 -0.13 -2.97 16 12 C 0.12 2.37 3.28 -66.72 -0.22 2.15 16 13 H 0.08 1.68 8.14 -51.93 -0.42 1.25 16 14 C 0.16 3.55 2.61 -68.07 -0.18 3.37 16 15 H 0.02 0.42 8.06 -51.93 -0.42 0.00 16 16 C -0.12 -2.20 5.50 -27.24 -0.15 -2.35 16 17 C -0.12 -1.93 5.93 -26.42 -0.16 -2.09 16 18 C 0.07 1.11 6.30 -3.45 -0.02 1.09 16 19 N -0.58 -10.41 2.91 -165.11 -0.48 -10.89 16 20 C 0.60 10.57 7.63 -12.45 -0.10 10.47 16 21 O -0.53 -10.35 13.83 5.28 0.07 -10.28 16 22 C 0.04 0.54 6.75 -83.43 -0.56 -0.02 16 23 C -0.02 -0.18 11.48 -16.26 -0.19 -0.37 16 24 N -0.40 -3.88 2.93 -64.14 -0.19 -4.07 16 25 C 0.11 0.56 11.05 -16.38 -0.18 0.38 16 26 C -0.21 -0.64 10.06 -39.79 -0.40 -1.04 16 27 C 0.17 0.91 11.27 -17.07 -0.19 0.72 16 28 N -0.43 -4.52 10.48 -13.67 -0.14 -4.67 16 29 C 0.38 4.68 8.90 -322.41 -2.87 1.81 16 30 N -0.44 -6.47 7.72 -11.03 -0.09 -6.55 16 31 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 32 H 0.04 1.12 7.81 -51.93 -0.41 0.72 16 33 H 0.06 1.58 7.19 -51.93 -0.37 1.20 16 34 H 0.08 1.77 6.32 -51.93 -0.33 1.45 16 35 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 36 H 0.06 1.19 8.12 -51.93 -0.42 0.76 16 37 H 0.06 1.26 7.74 -51.93 -0.40 0.86 16 38 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.14 2.21 3.84 -69.48 -0.27 1.95 16 41 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.20 1.75 8.06 -52.49 -0.42 1.33 16 43 H 0.18 0.19 8.06 -52.49 -0.42 -0.23 16 44 H 0.17 -0.15 8.06 -52.49 -0.42 -0.57 16 45 H 0.18 0.23 8.06 -52.49 -0.42 -0.20 16 LS Contribution 356.91 15.07 5.38 5.38 Total: -1.00 -36.71 356.91 -11.97 -48.68 By element: Atomic # 1 Polarization: 5.59 SS G_CDS: -5.94 Total: -0.36 kcal Atomic # 6 Polarization: 14.38 SS G_CDS: -5.59 Total: 8.79 kcal Atomic # 7 Polarization: -68.99 SS G_CDS: -0.86 Total: -69.85 kcal Atomic # 8 Polarization: -10.35 SS G_CDS: 0.07 Total: -10.28 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -5.02 Total: 17.64 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -36.71 -11.97 -48.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049572599.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 181.910 kcal (2) G-P(sol) polarization free energy of solvation -36.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 145.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.680 kcal (6) G-S(sol) free energy of system = (1) + (5) 133.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds