Wall clock time and date at job start Sat Apr 11 2020 06:20:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86799 * 120.00237 * 2 1 4 4 H 1.48501 * 109.46757 * 274.97527 * 3 2 1 5 5 H 1.48501 * 109.46974 * 34.97540 * 3 2 1 6 6 H 1.48501 * 109.46938 * 154.97587 * 3 2 1 7 7 C 1.38814 * 119.99487 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99491 * 171.38295 * 7 2 1 9 9 N 1.36933 * 120.00264 * 351.37895 * 7 2 1 10 10 C 1.47124 * 125.76782 * 3.99586 * 9 7 2 11 11 C 1.54569 * 107.25212 * 182.61010 * 10 9 7 12 12 C 1.54418 * 102.44795 * 21.67485 * 11 10 9 13 13 H 1.09004 * 110.71974 * 80.55448 * 12 11 10 14 14 C 1.48214 * 125.76560 * 184.01198 * 9 7 2 15 15 H 1.08996 * 112.30204 * 33.44165 * 14 9 7 16 16 C 1.53014 * 107.11930 * 270.84075 * 14 9 7 17 17 C 1.52731 * 110.80137 * 191.93059 * 16 14 9 18 18 C 1.53469 * 108.44103 * 63.77001 * 17 16 14 19 19 N 1.45122 * 111.60824 * 203.41760 * 12 11 10 20 20 C 1.34777 * 119.57641 * 248.62812 * 19 12 11 21 21 O 1.21593 * 119.99836 * 352.36352 * 20 19 12 22 22 C 1.47571 * 120.00039 * 172.36746 * 20 19 12 23 23 C 1.36485 * 125.92050 * 172.64366 * 22 20 19 24 24 N 1.36195 * 107.01056 * 179.87708 * 23 22 20 25 25 C 1.36676 * 132.44286 * 180.09819 * 24 23 22 26 26 C 1.35479 * 119.09875 * 180.31500 * 25 24 23 27 27 C 1.40301 * 119.36202 * 359.97438 * 26 25 24 28 28 N 1.31143 * 120.40801 * 0.02562 * 27 26 25 29 29 C 1.34287 * 120.94717 * 359.97438 * 28 27 26 30 30 N 1.32214 * 131.65301 * 179.97438 * 29 28 27 31 31 H 0.97004 * 119.99443 * 359.97438 * 1 2 3 32 32 H 1.08998 * 109.88299 * 63.19924 * 10 9 7 33 33 H 1.08993 * 109.87894 * 302.02367 * 10 9 7 34 34 H 1.08995 * 110.81244 * 263.43629 * 11 10 9 35 35 H 1.08996 * 110.97696 * 139.98851 * 11 10 9 36 36 H 1.09006 * 109.20724 * 312.27039 * 16 14 9 37 37 H 1.08999 * 109.20789 * 71.58869 * 16 14 9 38 38 H 1.08997 * 109.64330 * 304.08520 * 17 16 14 39 39 H 1.08999 * 109.81542 * 183.55698 * 17 16 14 40 40 H 1.09002 * 109.82889 * 182.39549 * 18 17 16 41 41 H 1.09000 * 109.88565 * 61.47463 * 18 17 16 42 42 H 1.07999 * 126.49313 * 359.97438 * 23 22 20 43 43 H 1.07999 * 120.45542 * 0.33103 * 25 24 23 44 44 H 1.07999 * 120.31790 * 179.97438 * 26 25 24 45 45 H 1.08001 * 119.79889 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.3926 2.1070 -1.3948 5 1 1.5043 2.6200 0.8026 6 1 3.5965 1.4119 0.5922 7 6 2.0102 -1.2022 0.0005 8 1 3.0811 -1.2076 -0.1396 9 7 1.3371 -2.3813 0.1788 10 6 -0.1219 -2.5291 0.2975 11 6 -0.4117 -4.0259 0.5521 12 6 0.9352 -4.5358 1.1092 13 1 1.0321 -4.2917 2.1671 14 6 1.9553 -3.7242 0.2851 15 1 2.9288 -3.6938 0.7743 16 6 2.0613 -4.2849 -1.1346 17 6 2.4109 -5.7714 -1.1060 18 6 1.2592 -6.5281 -0.4307 19 7 1.0872 -5.9658 0.9143 20 6 1.0704 -6.7881 1.9820 21 8 1.0687 -6.3248 3.1062 22 6 1.0544 -8.2508 1.7867 23 6 1.1784 -9.1911 2.7681 24 7 1.1086 -10.4095 2.1637 25 6 1.1712 -11.6853 2.6499 26 6 1.0761 -12.7249 1.7864 27 6 0.9152 -12.4688 0.4164 28 7 0.8579 -11.2356 -0.0261 29 6 0.9507 -10.1944 0.8170 30 7 0.9205 -8.8892 0.6081 31 1 -0.4849 0.8401 0.0004 32 1 -0.6032 -2.2103 -0.6269 33 1 -0.4880 -1.9332 1.1334 34 1 -0.6638 -4.5352 -0.3780 35 1 -1.2067 -4.1499 1.2874 36 1 1.1078 -4.1504 -1.6454 37 1 2.8372 -3.7443 -1.6767 38 1 3.3297 -5.9208 -0.5390 39 1 2.5443 -6.1392 -2.1233 40 1 1.5042 -7.5878 -0.3599 41 1 0.3425 -6.3982 -1.0059 42 1 1.3059 -9.0043 3.8242 43 1 1.2946 -11.8624 3.7081 44 1 1.1235 -13.7411 2.1492 45 1 0.8382 -13.2922 -0.2782 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049572600.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:39 Heat of formation + Delta-G solvation = 128.553558 kcal Electronic energy + Delta-G solvation = -29882.482985 eV Core-core repulsion = 25903.437892 eV Total energy + Delta-G solvation = -3979.045093 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.45772 -40.24453 -38.66547 -37.63648 -35.35537 -34.85654 -32.30604 -32.21730 -31.41561 -29.78211 -28.93722 -28.10869 -25.97503 -24.55360 -24.20715 -23.73393 -22.86443 -21.78445 -20.30898 -19.89742 -18.86949 -18.16670 -17.88725 -17.01494 -16.81698 -16.76149 -16.16705 -15.54915 -14.86055 -14.81203 -14.69514 -14.54157 -14.18513 -13.77839 -13.66875 -13.44370 -13.26835 -12.88061 -12.72185 -12.38266 -12.22878 -11.95171 -11.90293 -11.35794 -11.12424 -10.85243 -10.79270 -10.67723 -10.54251 -10.45171 -10.13765 -10.04434 -9.93926 -9.64914 -9.59769 -9.49879 -9.31826 -8.64737 -8.51124 -8.13326 -6.78515 -5.66390 -2.97816 -0.03386 0.55897 1.73511 1.84771 2.96055 3.00875 3.26877 3.44993 3.46086 3.50644 3.52796 3.82186 3.94217 4.19775 4.49967 4.55251 4.65746 4.85366 5.04088 5.09429 5.26497 5.42640 5.46144 5.52574 5.57549 5.68308 5.70917 5.76566 5.83802 5.98192 6.01749 6.18988 6.26425 6.30989 6.41516 6.47585 6.52259 6.62354 6.72441 6.87487 7.06300 7.11481 7.17999 7.40020 7.62264 7.67272 7.73094 7.88634 8.28495 8.34978 9.26698 9.86955 10.53976 11.45644 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.031038 B = 0.002519 C = 0.002447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.901889 B =11113.513356 C =11440.239724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.007 4.007 3 Si 0.909 3.091 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.225 4.225 8 H 0.078 0.922 9 N -0.598 5.598 10 C 0.181 3.819 11 C -0.151 4.151 12 C 0.128 3.872 13 H 0.103 0.897 14 C 0.158 3.842 15 H 0.060 0.940 16 C -0.130 4.130 17 C -0.132 4.132 18 C 0.082 3.918 19 N -0.570 5.570 20 C 0.591 3.409 21 O -0.538 6.538 22 C 0.035 3.965 23 C -0.016 4.016 24 N -0.402 5.402 25 C 0.114 3.886 26 C -0.205 4.205 27 C 0.173 3.827 28 N -0.432 5.432 29 C 0.375 3.625 30 N -0.436 5.436 31 H 0.252 0.748 32 H 0.043 0.957 33 H 0.049 0.951 34 H 0.061 0.939 35 H 0.060 0.940 36 H 0.062 0.938 37 H 0.057 0.943 38 H 0.058 0.942 39 H 0.067 0.933 40 H 0.133 0.867 41 H 0.065 0.935 42 H 0.201 0.799 43 H 0.178 0.822 44 H 0.167 0.833 45 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.809 -30.052 3.981 30.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.204 4.204 3 Si 0.739 3.261 4 H -0.218 1.218 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.353 4.353 8 H 0.096 0.904 9 N -0.322 5.322 10 C 0.056 3.944 11 C -0.190 4.190 12 C 0.023 3.977 13 H 0.121 0.879 14 C 0.049 3.951 15 H 0.078 0.922 16 C -0.170 4.170 17 C -0.171 4.171 18 C -0.040 4.040 19 N -0.299 5.299 20 C 0.376 3.624 21 O -0.416 6.416 22 C -0.099 4.099 23 C -0.150 4.150 24 N -0.079 5.079 25 C -0.017 4.017 26 C -0.228 4.228 27 C -0.016 4.016 28 N -0.143 5.143 29 C 0.026 3.974 30 N -0.160 5.160 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.067 0.933 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.081 0.919 37 H 0.076 0.924 38 H 0.077 0.923 39 H 0.086 0.914 40 H 0.150 0.850 41 H 0.083 0.917 42 H 0.218 0.782 43 H 0.195 0.805 44 H 0.184 0.816 45 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 1.544 -28.620 2.961 28.814 hybrid contribution 0.540 0.258 1.426 1.546 sum 2.084 -28.362 4.387 28.775 Atomic orbital electron populations 1.69987 1.04895 1.24995 1.56763 1.24801 0.95664 0.97564 1.02335 0.86150 0.78767 0.83793 0.77381 1.21785 1.21687 1.20672 1.19025 0.91392 0.82491 1.42385 0.90435 1.44699 1.01782 1.00513 1.85244 1.21164 0.84475 0.88053 1.00695 1.23117 0.95951 0.99931 1.00012 1.21876 0.96840 0.77233 1.01705 0.87920 1.21331 0.94801 0.86170 0.92782 0.92213 1.22128 1.01886 0.93243 0.99769 1.21928 0.98026 0.96998 1.00129 1.22742 0.98590 1.01088 0.81611 1.47470 1.68656 1.06913 1.06845 1.16940 0.77476 0.83059 0.84892 1.90802 1.51557 1.75921 1.23273 1.20876 1.05348 0.95047 0.88603 1.22623 1.10969 0.80847 1.00608 1.43915 1.46035 1.06337 1.11623 1.22287 0.96806 0.81150 1.01503 1.21862 1.06183 1.00353 0.94424 1.23396 0.90667 0.93242 0.94274 1.68001 1.14668 0.97879 1.33724 1.22215 1.04530 0.93074 0.77564 1.70828 1.22066 0.98996 1.24126 0.93798 0.93905 0.93251 0.92065 0.92086 0.91892 0.92376 0.92313 0.91433 0.85016 0.91686 0.78174 0.80495 0.81578 0.79863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.47 10.40 55.49 0.58 -26.90 16 2 C -0.01 -0.21 5.47 -17.43 -0.10 -0.31 16 3 Si 0.91 22.55 29.56 -169.99 -5.03 17.53 16 4 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 5 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 6 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 7 C -0.22 -6.35 10.28 -15.06 -0.15 -6.50 16 8 H 0.08 2.12 7.84 -52.48 -0.41 1.71 16 9 N -0.60 -15.51 2.91 -162.19 -0.47 -15.98 16 10 C 0.18 4.55 5.19 -2.88 -0.01 4.53 16 11 C -0.15 -3.11 6.08 -25.16 -0.15 -3.26 16 12 C 0.13 2.58 3.13 -67.29 -0.21 2.37 16 13 H 0.10 2.27 6.93 -51.93 -0.36 1.91 16 14 C 0.16 3.41 3.60 -66.34 -0.24 3.17 16 15 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 16 C -0.13 -2.49 5.10 -26.86 -0.14 -2.63 16 17 C -0.13 -2.07 6.11 -26.63 -0.16 -2.24 16 18 C 0.08 1.30 5.74 -3.64 -0.02 1.28 16 19 N -0.57 -10.09 2.73 -166.22 -0.45 -10.54 16 20 C 0.59 10.27 7.63 -12.45 -0.10 10.18 16 21 O -0.54 -10.55 16.21 5.28 0.09 -10.46 16 22 C 0.03 0.50 6.60 -83.43 -0.55 -0.05 16 23 C -0.02 -0.17 11.48 -16.25 -0.19 -0.36 16 24 N -0.40 -3.77 2.93 -64.13 -0.19 -3.96 16 25 C 0.11 0.53 11.05 -16.38 -0.18 0.34 16 26 C -0.21 -0.59 10.06 -39.79 -0.40 -0.99 16 27 C 0.17 0.89 11.27 -17.07 -0.19 0.69 16 28 N -0.43 -4.48 10.48 -13.67 -0.14 -4.62 16 29 C 0.37 4.60 8.90 -322.42 -2.87 1.73 16 30 N -0.44 -6.34 7.72 -11.03 -0.09 -6.43 16 31 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 32 H 0.04 1.17 7.61 -51.93 -0.40 0.78 16 33 H 0.05 1.37 7.33 -51.93 -0.38 0.99 16 34 H 0.06 1.20 6.80 -51.93 -0.35 0.84 16 35 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 36 H 0.06 1.28 7.12 -51.93 -0.37 0.91 16 37 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 38 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 39 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 40 H 0.13 2.04 4.11 -64.64 -0.27 1.78 16 41 H 0.06 1.04 7.53 -51.93 -0.39 0.65 16 42 H 0.20 1.66 8.06 -52.49 -0.42 1.24 16 43 H 0.18 0.14 8.06 -52.49 -0.42 -0.28 16 44 H 0.17 -0.18 8.06 -52.49 -0.42 -0.61 16 45 H 0.18 0.21 8.06 -52.49 -0.42 -0.21 16 LS Contribution 358.48 15.07 5.40 5.40 Total: -1.00 -36.16 358.48 -11.83 -47.99 By element: Atomic # 1 Polarization: 5.87 SS G_CDS: -5.87 Total: 0.01 kcal Atomic # 6 Polarization: 13.62 SS G_CDS: -5.66 Total: 7.96 kcal Atomic # 7 Polarization: -67.66 SS G_CDS: -0.77 Total: -68.43 kcal Atomic # 8 Polarization: -10.55 SS G_CDS: 0.09 Total: -10.46 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -5.03 Total: 17.53 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -36.16 -11.83 -47.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049572600.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 176.545 kcal (2) G-P(sol) polarization free energy of solvation -36.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 140.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.991 kcal (6) G-S(sol) free energy of system = (1) + (5) 128.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds