Wall clock time and date at job start Sat Apr 11 2020 06:20:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86796 * 120.00004 * 2 1 4 4 H 1.48505 * 109.47274 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47248 * 299.99987 * 3 2 1 6 6 H 1.48501 * 109.47076 * 59.99815 * 3 2 1 7 7 C 1.38816 * 119.99915 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99914 * 180.02562 * 7 2 1 9 9 N 1.36932 * 120.00217 * 359.97438 * 7 2 1 10 10 C 1.47123 * 125.76951 * 0.02562 * 9 7 2 11 11 C 1.54567 * 107.25753 * 182.58925 * 10 9 7 12 12 C 1.54421 * 102.44225 * 21.67993 * 11 10 9 13 13 H 1.09000 * 110.00358 * 80.25197 * 12 11 10 14 14 C 1.48210 * 125.76871 * 180.02562 * 9 7 2 15 15 H 1.09000 * 112.30700 * 33.45829 * 14 9 7 16 16 C 1.53012 * 107.11746 * 270.85985 * 14 9 7 17 17 C 1.54339 * 109.94082 * 191.02055 * 16 14 9 18 18 C 1.53465 * 108.14917 * 64.52219 * 17 16 14 19 19 N 1.45122 * 112.29894 * 203.07705 * 12 11 10 20 20 C 1.34774 * 119.57893 * 249.10449 * 19 12 11 21 21 O 1.21452 * 120.00260 * 183.48676 * 20 19 12 22 22 C 1.48635 * 119.99896 * 3.48440 * 20 19 12 23 23 N 1.33507 * 120.60163 * 7.46854 * 22 20 19 24 24 C 1.30815 * 122.65120 * 179.77099 * 23 22 20 25 25 N 1.34054 * 123.38180 * 0.48159 * 24 23 22 26 26 H 0.96995 * 120.21450 * 179.76303 * 25 24 23 27 27 C 1.36871 * 119.56921 * 359.78286 * 25 24 23 28 28 N 1.31636 * 135.95490 * 179.97438 * 27 25 24 29 29 C 1.33529 * 110.83322 * 180.02562 * 28 27 25 30 30 C 1.36081 * 110.92700 * 359.97438 * 29 28 27 31 31 C 1.39543 * 120.60269 * 187.74134 * 22 20 19 32 32 H 0.96996 * 120.00446 * 0.02562 * 1 2 3 33 33 H 1.09003 * 109.87822 * 63.17684 * 10 9 7 34 34 H 1.08997 * 109.88478 * 302.00745 * 10 9 7 35 35 H 1.08997 * 110.81384 * 263.44228 * 11 10 9 36 36 H 1.08999 * 110.97938 * 139.98863 * 11 10 9 37 37 H 1.09002 * 109.21179 * 312.26781 * 16 14 9 38 38 H 1.08999 * 109.20993 * 71.58856 * 16 14 9 39 39 H 1.08999 * 110.12471 * 304.72357 * 17 16 14 40 40 H 1.08999 * 109.62072 * 184.01276 * 17 16 14 41 41 H 1.09002 * 109.83349 * 181.98921 * 18 17 16 42 42 H 1.08997 * 109.89006 * 61.06152 * 18 17 16 43 43 H 1.07997 * 118.30894 * 180.23889 * 24 23 22 44 44 H 1.07993 * 124.53687 * 179.97438 * 29 28 27 45 45 H 1.07998 * 126.72359 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1382 -2.5360 -0.0005 11 6 -0.4461 -4.0492 0.0661 12 6 0.8582 -4.6285 0.6558 13 1 0.8712 -4.4926 1.7372 14 6 1.9339 -3.7396 -0.0005 15 1 2.8709 -3.7715 0.5554 16 6 2.1388 -4.1413 -1.4627 17 6 2.5093 -5.6369 -1.5508 18 6 1.3134 -6.4561 -1.0468 19 7 1.0339 -6.0319 0.3306 20 6 0.9388 -6.9577 1.3054 21 8 1.1468 -8.1276 1.0543 22 6 0.5793 -6.5468 2.6879 23 7 0.2040 -5.2923 2.9482 24 6 -0.1249 -4.8886 4.1483 25 7 -0.1080 -5.6866 5.2254 26 1 -0.3579 -5.3378 6.0952 27 6 0.2645 -6.9966 5.0896 28 7 0.3943 -8.0315 5.8928 29 6 0.8030 -9.1084 5.2174 30 6 0.9651 -8.8216 3.8971 31 6 0.6334 -7.4639 3.7383 32 1 -0.4850 0.8400 -0.0004 33 1 -0.5534 -2.1131 -0.9153 34 1 -0.5616 -2.0328 0.8686 35 1 -0.6327 -4.4507 -0.9298 36 1 -1.2907 -4.2469 0.7262 37 1 1.2235 -3.9434 -2.0206 38 1 2.9510 -3.5507 -1.8864 39 1 3.3823 -5.8441 -0.9319 40 1 2.7234 -5.9006 -2.5865 41 1 1.5589 -7.5180 -1.0641 42 1 0.4433 -6.2675 -1.6756 43 1 -0.4217 -3.8585 4.2787 44 1 0.9810 -10.0774 5.6597 45 1 1.2867 -9.5026 3.1230 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049573634.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:42 Heat of formation + Delta-G solvation = 125.034461 kcal Electronic energy + Delta-G solvation = -30767.835347 eV Core-core repulsion = 26788.637655 eV Total energy + Delta-G solvation = -3979.197692 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.10652 -40.24394 -38.79032 -38.09833 -35.38357 -35.00330 -32.50343 -32.09187 -30.62983 -29.26720 -28.92629 -28.24827 -26.03877 -24.54892 -24.07348 -23.54115 -22.14619 -21.26602 -20.60633 -19.97302 -18.92027 -18.48171 -17.87219 -17.04414 -16.69719 -16.27365 -15.95154 -15.69231 -14.97590 -14.82322 -14.73067 -14.22833 -13.89760 -13.63554 -13.35893 -13.29415 -13.07058 -12.82450 -12.60554 -12.40246 -12.17815 -11.98006 -11.65143 -11.47903 -11.06176 -10.96313 -10.83856 -10.64305 -10.49189 -10.42235 -10.19527 -10.07459 -9.88845 -9.75185 -9.64426 -8.95912 -8.69481 -8.64971 -8.29175 -7.99571 -6.87923 -5.75525 -3.08604 -0.40509 1.22309 2.01834 2.53498 2.90293 3.26422 3.35135 3.42077 3.43595 3.52044 3.63173 3.93272 4.33885 4.45049 4.62379 4.74934 5.03558 5.20499 5.28640 5.32911 5.35702 5.46016 5.52393 5.62502 5.67281 5.82515 5.84845 6.00530 6.10818 6.14557 6.16857 6.20718 6.31573 6.34334 6.40569 6.46371 6.55161 6.59517 6.86499 6.89764 6.94612 7.11076 7.26605 7.53519 7.58877 7.63215 7.79188 7.79499 8.14428 8.20917 9.17485 9.76907 10.43739 11.35438 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013920 B = 0.003837 C = 0.003223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2010.968557 B = 7295.317313 C = 8686.132156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.007 4.007 3 Si 0.908 3.092 4 H -0.281 1.281 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.223 4.223 8 H 0.077 0.923 9 N -0.597 5.597 10 C 0.184 3.816 11 C -0.144 4.144 12 C 0.080 3.920 13 H 0.165 0.835 14 C 0.154 3.846 15 H 0.055 0.945 16 C -0.131 4.131 17 C -0.132 4.132 18 C 0.108 3.892 19 N -0.564 5.564 20 C 0.560 3.440 21 O -0.527 6.527 22 C 0.203 3.797 23 N -0.494 5.494 24 C 0.353 3.647 25 N -0.517 5.517 26 H 0.428 0.572 27 C 0.254 3.746 28 N -0.520 5.520 29 C 0.057 3.943 30 C -0.195 4.195 31 C -0.155 4.155 32 H 0.251 0.749 33 H 0.038 0.962 34 H 0.051 0.949 35 H 0.052 0.948 36 H 0.060 0.940 37 H 0.064 0.936 38 H 0.057 0.943 39 H 0.063 0.937 40 H 0.068 0.932 41 H 0.090 0.910 42 H 0.070 0.930 43 H 0.225 0.775 44 H 0.165 0.835 45 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.279 -11.601 6.892 13.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.203 4.203 3 Si 0.739 3.261 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.351 4.351 8 H 0.095 0.905 9 N -0.321 5.321 10 C 0.060 3.940 11 C -0.183 4.183 12 C -0.024 4.024 13 H 0.180 0.820 14 C 0.045 3.955 15 H 0.073 0.927 16 C -0.171 4.171 17 C -0.171 4.171 18 C -0.014 4.014 19 N -0.294 5.294 20 C 0.346 3.654 21 O -0.404 6.404 22 C 0.068 3.932 23 N -0.215 5.215 24 C 0.071 3.929 25 N -0.121 5.121 26 H 0.267 0.733 27 C 0.000 4.000 28 N -0.241 5.241 29 C -0.086 4.086 30 C -0.219 4.219 31 C -0.168 4.168 32 H 0.061 0.939 33 H 0.056 0.944 34 H 0.069 0.931 35 H 0.070 0.930 36 H 0.079 0.921 37 H 0.083 0.917 38 H 0.076 0.924 39 H 0.082 0.918 40 H 0.087 0.913 41 H 0.108 0.892 42 H 0.088 0.912 43 H 0.241 0.759 44 H 0.183 0.817 45 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -1.383 -11.553 7.068 13.614 hybrid contribution 0.457 0.778 -0.077 0.906 sum -0.926 -10.775 6.991 12.877 Atomic orbital electron populations 1.69962 1.04771 1.24811 1.57294 1.24751 0.95666 0.97439 1.02441 0.86100 0.78770 0.84007 0.77212 1.20596 1.21850 1.21854 1.19079 0.90424 0.82270 1.43339 0.90530 1.44686 1.01519 0.99193 1.86705 1.21123 0.84139 0.87806 1.00977 1.22997 0.96478 0.99513 0.99322 1.23452 0.96210 0.76992 1.05756 0.81992 1.21393 0.94592 0.86325 0.93140 0.92654 1.22440 1.01711 0.92948 1.00028 1.22191 0.97330 0.96878 1.00698 1.21791 0.98235 0.99966 0.81388 1.47630 1.66580 1.07629 1.07527 1.17891 0.78734 0.85534 0.83283 1.90738 1.50565 1.17417 1.81670 1.21373 0.89819 0.87849 0.94143 1.68166 1.20017 1.15752 1.17566 1.25342 0.89734 0.96911 0.80914 1.41903 1.49452 1.07257 1.13447 0.73325 1.20530 1.01276 0.85998 0.92203 1.69518 1.23384 0.97631 1.33555 1.22631 0.98409 0.96262 0.91252 1.21546 1.08648 0.93654 0.98051 1.20792 1.07330 0.96882 0.91764 0.93882 0.94411 0.93073 0.92966 0.92114 0.91694 0.92389 0.91834 0.91349 0.89194 0.91181 0.75873 0.81729 0.83093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.27 10.33 55.49 0.57 -24.69 16 2 C -0.01 -0.18 5.49 -17.43 -0.10 -0.28 16 3 Si 0.91 21.04 29.55 -169.99 -5.02 16.02 16 4 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 7 C -0.22 -5.76 10.29 -15.06 -0.16 -5.91 16 8 H 0.08 1.95 7.83 -52.49 -0.41 1.54 16 9 N -0.60 -13.80 2.91 -162.19 -0.47 -14.27 16 10 C 0.18 4.08 5.19 -2.88 -0.01 4.06 16 11 C -0.14 -2.52 6.11 -25.16 -0.15 -2.68 16 12 C 0.08 1.34 2.53 -67.29 -0.17 1.17 16 13 H 0.16 2.68 3.81 -93.69 -0.36 2.33 16 14 C 0.15 2.95 3.56 -66.35 -0.24 2.71 16 15 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 16 C -0.13 -2.28 5.21 -26.02 -0.14 -2.41 16 17 C -0.13 -1.86 6.16 -25.79 -0.16 -2.02 16 18 C 0.11 1.54 6.19 -3.63 -0.02 1.52 16 19 N -0.56 -8.86 2.75 -165.82 -0.46 -9.32 16 20 C 0.56 9.13 7.66 -11.97 -0.09 9.04 16 21 O -0.53 -9.40 14.79 5.41 0.08 -9.32 16 22 C 0.20 2.99 6.67 -82.36 -0.55 2.44 16 23 N -0.49 -6.25 6.00 -10.67 -0.06 -6.32 16 24 C 0.35 2.96 12.24 -91.00 -1.11 1.85 16 25 N -0.52 -4.23 5.32 -12.02 -0.06 -4.29 16 26 H 0.43 1.86 8.93 -40.82 -0.36 1.49 16 27 C 0.25 3.26 8.71 -154.19 -1.34 1.92 16 28 N -0.52 -7.31 11.16 -10.91 -0.12 -7.43 16 29 C 0.06 0.75 11.70 -17.59 -0.21 0.55 16 30 C -0.20 -2.81 10.26 -39.44 -0.40 -3.22 16 31 C -0.16 -2.29 6.19 -104.65 -0.65 -2.94 16 32 H 0.25 6.75 8.31 -40.82 -0.34 6.41 16 33 H 0.04 0.95 7.60 -51.93 -0.39 0.55 16 34 H 0.05 1.23 7.30 -51.93 -0.38 0.85 16 35 H 0.05 0.90 6.92 -51.93 -0.36 0.54 16 36 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 37 H 0.06 1.21 7.12 -51.93 -0.37 0.84 16 38 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 39 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 40 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.09 1.26 6.93 -51.93 -0.36 0.90 16 42 H 0.07 0.96 7.61 -51.93 -0.40 0.56 16 43 H 0.23 0.90 8.06 -52.49 -0.42 0.48 16 44 H 0.17 1.65 8.06 -52.49 -0.42 1.22 16 45 H 0.15 2.15 7.41 -52.49 -0.39 1.77 16 LS Contribution 354.91 15.07 5.35 5.35 Total: -1.00 -33.50 354.91 -11.57 -45.07 By element: Atomic # 1 Polarization: 9.29 SS G_CDS: -5.87 Total: 3.41 kcal Atomic # 6 Polarization: 11.29 SS G_CDS: -5.50 Total: 5.79 kcal Atomic # 7 Polarization: -65.72 SS G_CDS: -0.61 Total: -66.32 kcal Atomic # 8 Polarization: -9.40 SS G_CDS: 0.08 Total: -9.32 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -33.50 -11.57 -45.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049573634.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.109 kcal (2) G-P(sol) polarization free energy of solvation -33.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 136.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.075 kcal (6) G-S(sol) free energy of system = (1) + (5) 125.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds