Wall clock time and date at job start Sat Apr 11 2020 06:20:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86796 * 120.00004 * 2 1 4 4 H 1.48505 * 109.47274 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47248 * 299.99987 * 3 2 1 6 6 H 1.48501 * 109.47076 * 59.99815 * 3 2 1 7 7 C 1.38816 * 119.99915 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99914 * 180.02562 * 7 2 1 9 9 N 1.36932 * 120.00217 * 359.97438 * 7 2 1 10 10 C 1.47123 * 125.76951 * 0.02562 * 9 7 2 11 11 C 1.54567 * 107.25753 * 182.58925 * 10 9 7 12 12 C 1.54421 * 102.44225 * 21.67993 * 11 10 9 13 13 H 1.09000 * 110.00358 * 80.25197 * 12 11 10 14 14 C 1.48210 * 125.76871 * 180.02562 * 9 7 2 15 15 H 1.09000 * 112.30700 * 33.45829 * 14 9 7 16 16 C 1.53012 * 107.11746 * 270.85985 * 14 9 7 17 17 C 1.54339 * 109.94082 * 191.02055 * 16 14 9 18 18 C 1.53465 * 108.14917 * 64.52219 * 17 16 14 19 19 N 1.45122 * 112.29894 * 203.07705 * 12 11 10 20 20 C 1.34774 * 119.57893 * 249.10449 * 19 12 11 21 21 O 1.21452 * 120.00260 * 183.48676 * 20 19 12 22 22 C 1.48635 * 119.99896 * 3.48440 * 20 19 12 23 23 N 1.33507 * 120.60163 * 7.46854 * 22 20 19 24 24 C 1.30815 * 122.65120 * 179.77099 * 23 22 20 25 25 N 1.34054 * 123.38180 * 0.48159 * 24 23 22 26 26 H 0.96995 * 120.21450 * 179.76303 * 25 24 23 27 27 C 1.36871 * 119.56921 * 359.78286 * 25 24 23 28 28 N 1.31636 * 135.95490 * 179.97438 * 27 25 24 29 29 C 1.33529 * 110.83322 * 180.02562 * 28 27 25 30 30 C 1.36081 * 110.92700 * 359.97438 * 29 28 27 31 31 C 1.39543 * 120.60269 * 187.74134 * 22 20 19 32 32 H 0.96996 * 120.00446 * 0.02562 * 1 2 3 33 33 H 1.09003 * 109.87822 * 63.17684 * 10 9 7 34 34 H 1.08997 * 109.88478 * 302.00745 * 10 9 7 35 35 H 1.08997 * 110.81384 * 263.44228 * 11 10 9 36 36 H 1.08999 * 110.97938 * 139.98863 * 11 10 9 37 37 H 1.09002 * 109.21179 * 312.26781 * 16 14 9 38 38 H 1.08999 * 109.20993 * 71.58856 * 16 14 9 39 39 H 1.08999 * 110.12471 * 304.72357 * 17 16 14 40 40 H 1.08999 * 109.62072 * 184.01276 * 17 16 14 41 41 H 1.09002 * 109.83349 * 181.98921 * 18 17 16 42 42 H 1.08997 * 109.89006 * 61.06152 * 18 17 16 43 43 H 1.07997 * 118.30894 * 180.23889 * 24 23 22 44 44 H 1.07993 * 124.53687 * 179.97438 * 29 28 27 45 45 H 1.07998 * 126.72359 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1382 -2.5360 -0.0005 11 6 -0.4461 -4.0492 0.0661 12 6 0.8582 -4.6285 0.6558 13 1 0.8712 -4.4926 1.7372 14 6 1.9339 -3.7396 -0.0005 15 1 2.8709 -3.7715 0.5554 16 6 2.1388 -4.1413 -1.4627 17 6 2.5093 -5.6369 -1.5508 18 6 1.3134 -6.4561 -1.0468 19 7 1.0339 -6.0319 0.3306 20 6 0.9388 -6.9577 1.3054 21 8 1.1468 -8.1276 1.0543 22 6 0.5793 -6.5468 2.6879 23 7 0.2040 -5.2923 2.9482 24 6 -0.1249 -4.8886 4.1483 25 7 -0.1080 -5.6866 5.2254 26 1 -0.3579 -5.3378 6.0952 27 6 0.2645 -6.9966 5.0896 28 7 0.3943 -8.0315 5.8928 29 6 0.8030 -9.1084 5.2174 30 6 0.9651 -8.8216 3.8971 31 6 0.6334 -7.4639 3.7383 32 1 -0.4850 0.8400 -0.0004 33 1 -0.5534 -2.1131 -0.9153 34 1 -0.5616 -2.0328 0.8686 35 1 -0.6327 -4.4507 -0.9298 36 1 -1.2907 -4.2469 0.7262 37 1 1.2235 -3.9434 -2.0206 38 1 2.9510 -3.5507 -1.8864 39 1 3.3823 -5.8441 -0.9319 40 1 2.7234 -5.9006 -2.5865 41 1 1.5589 -7.5180 -1.0641 42 1 0.4433 -6.2675 -1.6756 43 1 -0.4217 -3.8585 4.2787 44 1 0.9810 -10.0774 5.6597 45 1 1.2867 -9.5026 3.1230 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049573634.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:41 Heat of formation + Delta-G solvation = 105.876338 kcal Electronic energy + Delta-G solvation = -30768.666106 eV Core-core repulsion = 26788.637655 eV Total energy + Delta-G solvation = -3980.028451 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.06761 -41.51726 -39.72380 -39.52694 -36.53826 -36.32607 -33.92077 -33.79238 -31.62129 -30.72035 -30.18684 -29.71094 -27.19774 -26.28043 -25.34395 -24.50926 -23.40038 -22.43623 -21.82915 -21.59539 -20.06815 -19.46153 -19.04624 -18.72107 -17.67785 -17.43462 -17.00967 -16.89264 -16.68157 -16.20460 -15.99388 -15.65618 -15.14904 -14.97846 -14.81937 -14.32265 -14.19241 -14.12979 -13.96218 -13.62228 -13.48388 -13.42772 -13.07491 -12.83449 -12.66270 -12.59783 -12.31287 -12.15788 -12.01302 -11.84562 -11.78254 -11.57371 -11.41935 -11.32366 -10.81283 -10.61940 -10.15061 -9.77519 -9.56323 -9.00308 -8.76929 -7.75337 -5.08964 -1.38026 0.32833 1.24360 1.38162 1.50390 1.52623 1.60842 1.73407 2.26612 2.47706 2.54121 2.67409 2.95686 3.42695 3.44035 3.59008 3.75043 3.98519 4.00689 4.04648 4.08697 4.22014 4.25619 4.26536 4.38517 4.56736 4.62590 4.73620 4.78945 4.85310 4.87817 5.04906 5.07170 5.11618 5.16550 5.18302 5.35468 5.45558 5.53717 5.56451 5.61789 5.77741 5.79896 5.89336 5.95363 6.22320 6.30010 6.46958 6.81557 6.92348 7.20432 7.85783 8.51768 9.34073 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013920 B = 0.003837 C = 0.003223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2010.968557 B = 7295.317313 C = 8686.132156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C -0.057 4.057 3 Si 0.967 3.033 4 H -0.272 1.272 5 H -0.299 1.299 6 H -0.291 1.291 7 C -0.228 4.228 8 H 0.076 0.924 9 N -0.612 5.612 10 C 0.198 3.802 11 C -0.126 4.126 12 C 0.095 3.905 13 H 0.174 0.826 14 C 0.148 3.852 15 H 0.049 0.951 16 C -0.124 4.124 17 C -0.119 4.119 18 C 0.105 3.895 19 N -0.564 5.564 20 C 0.558 3.442 21 O -0.547 6.547 22 C 0.196 3.804 23 N -0.521 5.521 24 C 0.375 3.625 25 N -0.496 5.496 26 H 0.450 0.550 27 C 0.255 3.745 28 N -0.538 5.538 29 C 0.057 3.943 30 C -0.219 4.219 31 C -0.183 4.183 32 H 0.245 0.755 33 H -0.001 1.001 34 H 0.029 0.971 35 H 0.054 0.946 36 H 0.079 0.921 37 H 0.050 0.950 38 H 0.044 0.956 39 H 0.063 0.937 40 H 0.094 0.906 41 H 0.096 0.904 42 H 0.078 0.922 43 H 0.274 0.726 44 H 0.190 0.810 45 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.207 -11.773 8.091 14.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.251 4.251 3 Si 0.797 3.203 4 H -0.196 1.196 5 H -0.227 1.227 6 H -0.218 1.218 7 C -0.358 4.358 8 H 0.094 0.906 9 N -0.336 5.336 10 C 0.073 3.927 11 C -0.166 4.166 12 C -0.009 4.009 13 H 0.189 0.811 14 C 0.040 3.960 15 H 0.067 0.933 16 C -0.164 4.164 17 C -0.158 4.158 18 C -0.016 4.016 19 N -0.293 5.293 20 C 0.344 3.656 21 O -0.425 6.425 22 C 0.061 3.939 23 N -0.242 5.242 24 C 0.094 3.906 25 N -0.100 5.100 26 H 0.293 0.707 27 C 0.000 4.000 28 N -0.259 5.259 29 C -0.086 4.086 30 C -0.243 4.243 31 C -0.195 4.195 32 H 0.055 0.945 33 H 0.017 0.983 34 H 0.047 0.953 35 H 0.073 0.927 36 H 0.097 0.903 37 H 0.069 0.931 38 H 0.063 0.937 39 H 0.082 0.918 40 H 0.112 0.888 41 H 0.114 0.886 42 H 0.096 0.904 43 H 0.289 0.711 44 H 0.207 0.793 45 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -1.301 -11.739 8.300 14.435 hybrid contribution 0.434 0.850 -0.425 1.045 sum -0.867 -10.889 7.874 13.466 Atomic orbital electron populations 1.70143 1.05846 1.24866 1.58601 1.25411 0.96424 1.00116 1.03102 0.85181 0.78137 0.80482 0.76534 1.19632 1.22665 1.21812 1.19348 0.90688 0.83541 1.42193 0.90617 1.44866 1.02149 1.00054 1.86557 1.20820 0.83503 0.90436 0.97959 1.22805 0.97591 0.96060 1.00096 1.23279 0.94346 0.77153 1.06157 0.81095 1.21577 0.94930 0.85088 0.94371 0.93267 1.22268 1.00539 0.95250 0.98304 1.22100 0.97200 0.94076 1.02390 1.21908 0.98585 1.00251 0.80851 1.47613 1.66614 1.06992 1.08108 1.18164 0.78182 0.85237 0.84015 1.90720 1.51381 1.18177 1.82229 1.21138 0.90748 0.88779 0.93244 1.67903 1.21318 1.14884 1.20058 1.26208 0.86788 0.98012 0.79561 1.41918 1.47886 1.05522 1.14686 0.70655 1.20678 1.00787 0.87304 0.91237 1.69549 1.24314 0.98180 1.33846 1.23032 0.97505 0.97172 0.90869 1.21586 1.10190 0.93969 0.98555 1.20980 1.08467 0.97264 0.92803 0.94549 0.98319 0.95302 0.92692 0.90268 0.93080 0.93718 0.91788 0.88783 0.88618 0.90358 0.71054 0.79282 0.83943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -52.77 10.33 21.65 0.22 -52.54 16 2 C -0.06 -3.04 5.49 84.86 0.47 -2.57 16 3 Si 0.97 43.42 29.55 68.60 2.03 45.45 16 4 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 5 H -0.30 -13.72 7.11 99.48 0.71 -13.01 16 6 H -0.29 -12.96 7.11 99.48 0.71 -12.26 16 7 C -0.23 -11.88 10.29 84.04 0.86 -11.01 16 8 H 0.08 3.85 7.83 -2.91 -0.02 3.83 16 9 N -0.61 -28.46 2.91 -667.05 -1.94 -30.40 16 10 C 0.20 8.85 5.19 86.79 0.45 9.30 16 11 C -0.13 -4.31 6.11 31.61 0.19 -4.12 16 12 C 0.10 3.07 2.53 46.14 0.12 3.18 16 13 H 0.17 5.37 3.81 -84.84 -0.32 5.05 16 14 C 0.15 5.58 3.56 45.08 0.16 5.74 16 15 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 16 C -0.12 -4.23 5.21 31.05 0.16 -4.07 16 17 C -0.12 -3.15 6.16 31.20 0.19 -2.96 16 18 C 0.11 2.83 6.19 86.48 0.54 3.37 16 19 N -0.56 -17.00 2.75 -796.86 -2.19 -19.20 16 20 C 0.56 17.69 7.66 87.02 0.67 18.36 16 21 O -0.55 -19.32 14.79 -3.56 -0.05 -19.37 16 22 C 0.20 5.55 6.67 41.98 0.28 5.83 16 23 N -0.52 -11.97 6.00 -187.67 -1.13 -13.10 16 24 C 0.38 4.97 12.24 180.48 2.21 7.18 16 25 N -0.50 -6.48 5.32 -191.95 -1.02 -7.50 16 26 H 0.45 2.13 8.93 -92.71 -0.83 1.31 16 27 C 0.25 6.06 8.71 136.28 1.19 7.24 16 28 N -0.54 -14.28 11.16 -188.44 -2.10 -16.38 16 29 C 0.06 1.45 11.70 83.93 0.98 2.43 16 30 C -0.22 -6.31 10.26 22.36 0.23 -6.08 16 31 C -0.18 -5.23 6.19 -19.88 -0.12 -5.35 16 32 H 0.24 13.42 8.31 -92.71 -0.77 12.65 16 33 H 0.00 -0.07 7.60 -2.39 -0.02 -0.09 16 34 H 0.03 1.40 7.30 -2.39 -0.02 1.39 16 35 H 0.05 1.85 6.92 -2.39 -0.02 1.83 16 36 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 37 H 0.05 1.88 7.12 -2.39 -0.02 1.87 16 38 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 39 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 40 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 41 H 0.10 2.52 6.93 -2.39 -0.02 2.51 16 42 H 0.08 1.99 7.61 -2.39 -0.02 1.98 16 43 H 0.27 0.81 8.06 -2.91 -0.02 0.78 16 44 H 0.19 3.55 8.06 -2.91 -0.02 3.53 16 45 H 0.14 4.19 7.41 -2.91 -0.02 4.17 16 Total: -1.00 -74.65 354.91 2.29 -72.35 By element: Atomic # 1 Polarization: 14.32 SS G_CDS: -0.09 Total: 14.22 kcal Atomic # 6 Polarization: 17.89 SS G_CDS: 8.57 Total: 26.47 kcal Atomic # 7 Polarization: -130.96 SS G_CDS: -8.16 Total: -139.12 kcal Atomic # 8 Polarization: -19.32 SS G_CDS: -0.05 Total: -19.37 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.45 kcal Total: -74.65 2.29 -72.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049573634.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.231 kcal (2) G-P(sol) polarization free energy of solvation -74.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.355 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds