Wall clock time and date at job start Sat Apr 11 2020 06:20:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86796 * 119.99968 * 2 1 4 4 H 1.48499 * 109.47261 * 240.00425 * 3 2 1 5 5 H 1.48506 * 109.46971 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47280 * 119.99975 * 3 2 1 7 7 C 1.38813 * 119.99801 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99786 * 179.97438 * 7 2 1 9 9 N 1.36938 * 120.00187 * 359.97438 * 7 2 1 10 10 C 1.48381 * 126.56111 * 0.04182 * 9 7 2 11 11 C 1.55470 * 106.97337 * 174.43978 * 10 9 7 12 12 C 1.53429 * 101.67183 * 337.40347 * 11 10 9 13 13 H 1.08997 * 111.74541 * 281.77309 * 12 11 10 14 14 C 1.45026 * 126.56108 * 179.97438 * 9 7 2 15 15 H 1.08996 * 108.26329 * 96.11736 * 14 9 7 16 16 C 1.51086 * 119.18504 * 331.24152 * 14 9 7 17 17 C 1.53870 * 107.34274 * 176.12280 * 16 14 9 18 18 C 1.52288 * 111.58369 * 56.78357 * 17 16 14 19 19 N 1.45724 * 116.37883 * 152.73809 * 12 11 10 20 20 C 1.34772 * 122.23119 * 9.85853 * 19 12 11 21 21 O 1.21447 * 120.00472 * 3.50210 * 20 19 12 22 22 C 1.48640 * 120.00020 * 183.50102 * 20 19 12 23 23 N 1.33508 * 120.60170 * 352.78341 * 22 20 19 24 24 C 1.30804 * 122.65490 * 180.02562 * 23 22 20 25 25 N 1.34054 * 123.38297 * 0.02562 * 24 23 22 26 26 H 0.96996 * 120.22040 * 179.97438 * 25 24 23 27 27 C 1.36876 * 119.56989 * 359.97438 * 25 24 23 28 28 N 1.31631 * 135.96282 * 179.97438 * 27 25 24 29 29 C 1.33523 * 110.83803 * 180.02562 * 28 27 25 30 30 C 1.36078 * 110.92712 * 0.02562 * 29 28 27 31 31 C 1.39537 * 120.60245 * 173.09736 * 22 20 19 32 32 H 0.96997 * 119.99607 * 359.97438 * 1 2 3 33 33 H 1.09003 * 109.96323 * 293.82298 * 10 9 7 34 34 H 1.08998 * 109.95900 * 55.06371 * 10 9 7 35 35 H 1.09004 * 110.98981 * 219.29946 * 11 10 9 36 36 H 1.09006 * 110.98329 * 95.49911 * 11 10 9 37 37 H 1.08996 * 109.88277 * 295.58790 * 16 14 9 38 38 H 1.09002 * 109.88279 * 56.66436 * 16 14 9 39 39 H 1.09000 * 109.06696 * 177.45152 * 17 16 14 40 40 H 1.08997 * 109.06806 * 296.39895 * 17 16 14 41 41 H 1.09000 * 109.08158 * 191.21425 * 18 17 16 42 42 H 1.09001 * 108.99375 * 72.16754 * 18 17 16 43 43 H 1.08001 * 118.31652 * 180.02562 * 24 23 22 44 44 H 1.08002 * 124.53601 * 179.97438 * 29 28 27 45 45 H 1.07994 * 126.72056 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1485 -2.5576 -0.0009 11 6 -0.4302 -4.0798 -0.1448 12 6 0.8714 -4.5770 -0.7870 13 1 0.9041 -4.3590 -1.8545 14 6 1.9025 -3.7187 -0.0016 15 1 1.9380 -4.0764 1.0274 16 6 3.2560 -3.9344 -0.6373 17 6 3.6452 -5.4040 -0.4001 18 6 2.5940 -6.3580 -0.9516 19 7 1.2345 -5.9637 -0.5244 20 6 0.3893 -6.8274 0.0722 21 8 -0.7392 -6.4769 0.3527 22 6 0.8381 -8.2091 0.3867 23 7 2.0217 -8.6534 -0.0424 24 6 2.4561 -9.8610 0.2105 25 7 1.7604 -10.7620 0.9185 26 1 2.1268 -11.6457 1.0783 27 6 0.5295 -10.4268 1.4144 28 7 -0.4008 -11.0294 2.1245 29 6 -1.4391 -10.2165 2.3346 30 6 -1.2323 -9.0038 1.7531 31 6 0.0272 -9.0674 1.1301 32 1 -0.4849 0.8401 0.0004 33 1 -0.5657 -2.1889 0.9362 34 1 -0.5849 -2.0174 -0.8409 35 1 -1.2824 -4.2589 -0.8005 36 1 -0.5859 -4.5419 0.8301 37 1 3.1992 -3.7340 -1.7072 38 1 3.9919 -3.2767 -0.1747 39 1 4.5995 -5.6028 -0.8878 40 1 3.7514 -5.5758 0.6710 41 1 2.8035 -7.3655 -0.5921 42 1 2.6439 -6.3499 -2.0404 43 1 3.4252 -10.1471 -0.1708 44 1 -2.3248 -10.4859 2.8908 45 1 -1.9053 -8.1592 1.7641 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049573635.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:45 Heat of formation + Delta-G solvation = 105.018088 kcal Electronic energy + Delta-G solvation = -30373.920742 eV Core-core repulsion = 26393.855075 eV Total energy + Delta-G solvation = -3980.065667 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.02547 -41.61091 -39.75745 -39.31586 -37.03949 -36.07510 -34.22488 -33.82784 -31.65253 -30.92933 -30.10651 -29.65449 -27.31656 -26.33525 -25.38188 -24.45252 -22.95177 -22.80234 -22.02864 -21.49988 -20.64201 -19.39989 -19.00129 -18.42395 -17.73050 -17.23501 -17.09031 -16.91450 -16.61082 -16.26976 -16.04209 -15.71088 -15.33114 -15.05125 -14.85432 -14.36206 -14.21800 -14.12190 -13.99767 -13.90100 -13.48876 -13.36590 -13.16721 -12.93073 -12.69013 -12.66304 -12.43974 -12.28669 -12.09749 -11.76841 -11.75163 -11.65123 -11.44880 -10.97708 -10.83087 -10.70130 -10.16383 -9.76029 -9.56418 -9.02742 -8.91890 -7.84052 -5.21466 -1.36611 0.37504 1.28458 1.43602 1.45813 1.49837 1.55920 1.69966 2.24707 2.49701 2.52314 2.67030 2.95901 3.34284 3.37076 3.49870 3.65903 3.86073 3.99152 4.04832 4.11367 4.19020 4.28297 4.34491 4.38488 4.41643 4.57578 4.59715 4.75373 4.86124 4.91946 5.05378 5.10543 5.15682 5.19089 5.25720 5.34308 5.42712 5.46523 5.50406 5.57059 5.59812 5.68868 5.81800 5.94904 6.17219 6.31700 6.49212 6.80816 6.99388 7.04724 7.74852 8.45119 9.27696 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.021721 B = 0.003030 C = 0.002754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.769648 B = 9238.299368 C =10166.033610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.070 4.070 3 Si 0.981 3.019 4 H -0.271 1.271 5 H -0.298 1.298 6 H -0.278 1.278 7 C -0.235 4.235 8 H 0.090 0.910 9 N -0.612 5.612 10 C 0.184 3.816 11 C -0.113 4.113 12 C 0.128 3.872 13 H 0.085 0.915 14 C 0.155 3.845 15 H -0.005 1.005 16 C -0.114 4.114 17 C -0.115 4.115 18 C 0.051 3.949 19 N -0.572 5.572 20 C 0.550 3.450 21 O -0.548 6.548 22 C 0.212 3.788 23 N -0.522 5.522 24 C 0.385 3.615 25 N -0.498 5.498 26 H 0.453 0.547 27 C 0.260 3.740 28 N -0.535 5.535 29 C 0.053 3.947 30 C -0.224 4.224 31 C -0.191 4.191 32 H 0.246 0.754 33 H -0.001 1.001 34 H 0.028 0.972 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.064 0.936 38 H 0.055 0.945 39 H 0.114 0.886 40 H 0.055 0.945 41 H 0.186 0.814 42 H 0.076 0.924 43 H 0.300 0.700 44 H 0.185 0.815 45 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.076 -27.333 -2.702 30.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.604 5.604 2 C -0.263 4.263 3 Si 0.809 3.191 4 H -0.197 1.197 5 H -0.224 1.224 6 H -0.204 1.204 7 C -0.363 4.363 8 H 0.108 0.892 9 N -0.337 5.337 10 C 0.058 3.942 11 C -0.152 4.152 12 C 0.023 3.977 13 H 0.103 0.897 14 C 0.047 3.953 15 H 0.012 0.988 16 C -0.153 4.153 17 C -0.154 4.154 18 C -0.068 4.068 19 N -0.302 5.302 20 C 0.336 3.664 21 O -0.425 6.425 22 C 0.077 3.923 23 N -0.243 5.243 24 C 0.105 3.895 25 N -0.103 5.103 26 H 0.297 0.703 27 C 0.005 3.995 28 N -0.256 5.256 29 C -0.089 4.089 30 C -0.249 4.249 31 C -0.203 4.203 32 H 0.055 0.945 33 H 0.017 0.983 34 H 0.046 0.954 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.083 0.917 38 H 0.074 0.926 39 H 0.132 0.868 40 H 0.074 0.926 41 H 0.201 0.799 42 H 0.094 0.906 43 H 0.315 0.685 44 H 0.202 0.798 45 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 11.829 -27.346 -2.584 29.906 hybrid contribution -1.089 1.889 0.538 2.246 sum 10.740 -25.456 -2.046 27.705 Atomic orbital electron populations 1.70182 1.06562 1.25382 1.58314 1.25730 0.96556 1.01271 1.02703 0.85111 0.77060 0.78541 0.78376 1.19696 1.22394 1.20364 1.19391 0.91056 0.83098 1.42797 0.89235 1.44361 1.01985 1.00942 1.86402 1.21426 0.84032 0.90937 0.97765 1.22673 0.96455 0.95063 1.00975 1.22125 0.96305 0.80479 0.98824 0.89714 1.20913 0.94437 0.84857 0.95066 0.98792 1.21474 0.95190 0.98122 1.00476 1.21804 0.99975 0.91830 1.01754 1.23563 0.77467 1.05117 1.00697 1.48021 1.16484 1.09107 1.56623 1.18361 0.84808 0.84475 0.78725 1.90777 1.20617 1.77087 1.54021 1.20993 0.89374 0.92259 0.89706 1.67434 1.13862 1.14936 1.28091 1.26586 0.97291 0.82125 0.83544 1.41893 1.11249 1.18614 1.38550 0.70346 1.20613 0.89368 0.90801 0.98764 1.69523 1.02051 1.33797 1.20261 1.22935 0.96995 0.89847 0.99136 1.21591 0.97179 1.00576 1.05506 1.20932 0.98793 0.95139 1.05446 0.94457 0.98261 0.95401 0.91521 0.91535 0.91749 0.92612 0.86762 0.92620 0.79935 0.90611 0.68550 0.79843 0.85116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.90 10.46 21.65 0.23 -59.67 16 2 C -0.07 -4.09 5.49 84.86 0.47 -3.62 16 3 Si 0.98 46.54 29.55 68.60 2.03 48.57 16 4 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 5 H -0.30 -14.34 7.11 99.48 0.71 -13.63 16 6 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 7 C -0.23 -13.36 9.94 84.03 0.84 -12.52 16 8 H 0.09 4.75 7.31 -2.91 -0.02 4.73 16 9 N -0.61 -33.02 3.35 -670.57 -2.25 -35.27 16 10 C 0.18 10.08 5.47 86.87 0.48 10.56 16 11 C -0.11 -5.18 4.96 31.59 0.16 -5.03 16 12 C 0.13 5.03 3.32 46.13 0.15 5.18 16 13 H 0.09 3.32 8.14 -2.39 -0.02 3.30 16 14 C 0.16 6.68 2.57 45.49 0.12 6.79 16 15 H -0.01 -0.25 8.06 -2.39 -0.02 -0.27 16 16 C -0.11 -3.76 5.45 30.26 0.16 -3.60 16 17 C -0.12 -2.51 5.91 30.65 0.18 -2.33 16 18 C 0.05 1.08 6.18 85.88 0.53 1.61 16 19 N -0.57 -17.97 2.92 -794.51 -2.32 -20.29 16 20 C 0.55 18.45 7.67 87.02 0.67 19.11 16 21 O -0.55 -22.57 12.39 -3.55 -0.04 -22.61 16 22 C 0.21 5.29 6.75 41.98 0.28 5.57 16 23 N -0.52 -6.85 6.12 -187.67 -1.15 -8.00 16 24 C 0.39 0.60 12.24 180.49 2.21 2.81 16 25 N -0.50 -2.70 5.32 -191.94 -1.02 -3.72 16 26 H 0.45 -1.50 8.93 -92.71 -0.83 -2.33 16 27 C 0.26 5.22 8.72 136.28 1.19 6.41 16 28 N -0.54 -13.33 11.16 -188.43 -2.10 -15.44 16 29 C 0.05 1.39 11.70 83.93 0.98 2.37 16 30 C -0.22 -6.87 10.26 22.36 0.23 -6.64 16 31 C -0.19 -5.20 6.19 -19.88 -0.12 -5.32 16 32 H 0.25 15.05 8.31 -92.71 -0.77 14.28 16 33 H 0.00 -0.05 7.81 -2.39 -0.02 -0.07 16 34 H 0.03 1.66 7.19 -2.39 -0.02 1.65 16 35 H 0.07 2.96 8.14 -2.38 -0.02 2.94 16 36 H 0.07 3.21 6.32 -2.38 -0.02 3.20 16 37 H 0.06 2.11 8.12 -2.39 -0.02 2.09 16 38 H 0.06 1.93 7.70 -2.39 -0.02 1.91 16 39 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 40 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 41 H 0.19 2.74 3.61 -82.29 -0.30 2.44 16 42 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 43 H 0.30 -4.27 8.06 -2.91 -0.02 -4.29 16 44 H 0.18 3.79 8.06 -2.91 -0.02 3.77 16 45 H 0.13 4.45 7.40 -2.91 -0.02 4.43 16 Total: -1.00 -91.98 352.97 1.82 -90.16 By element: Atomic # 1 Polarization: 4.99 SS G_CDS: -0.07 Total: 4.92 kcal Atomic # 6 Polarization: 12.84 SS G_CDS: 8.52 Total: 21.35 kcal Atomic # 7 Polarization: -133.78 SS G_CDS: -8.61 Total: -142.39 kcal Atomic # 8 Polarization: -22.57 SS G_CDS: -0.04 Total: -22.61 kcal Atomic # 14 Polarization: 46.54 SS G_CDS: 2.03 Total: 48.57 kcal Total: -91.98 1.82 -90.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049573635.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 195.174 kcal (2) G-P(sol) polarization free energy of solvation -91.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.156 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds