Wall clock time and date at job start Sat Apr 11 2020 06:19:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86801 * 119.99859 * 2 1 4 4 H 1.48500 * 109.47044 * 269.99297 * 3 2 1 5 5 H 1.48499 * 109.47272 * 29.99223 * 3 2 1 6 6 H 1.48495 * 109.47400 * 149.99830 * 3 2 1 7 7 C 1.38812 * 120.00522 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00567 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99584 * 0.02562 * 7 2 1 10 10 C 1.48389 * 126.56188 * 359.97438 * 9 7 2 11 11 C 1.55471 * 106.97520 * 185.53783 * 10 9 7 12 12 C 1.53440 * 101.67103 * 22.59824 * 11 10 9 13 13 H 1.09001 * 111.14800 * 78.81718 * 12 11 10 14 14 C 1.45429 * 126.02166 * 180.87296 * 9 7 2 15 15 H 1.09000 * 107.60848 * 264.00135 * 14 9 7 16 16 C 1.51073 * 120.14508 * 29.03088 * 14 9 7 17 17 C 1.53872 * 107.40136 * 184.08047 * 16 14 9 18 18 C 1.52716 * 111.51997 * 303.03942 * 17 16 14 19 19 N 1.45727 * 116.36966 * 207.27818 * 12 11 10 20 20 C 1.34774 * 122.23109 * 351.00098 * 19 12 11 21 21 O 1.21458 * 119.99744 * 355.80485 * 20 19 12 22 22 C 1.48631 * 120.00330 * 175.81701 * 20 19 12 23 23 N 1.33511 * 120.60501 * 7.01566 * 22 20 19 24 24 C 1.30802 * 122.65587 * 179.97438 * 23 22 20 25 25 N 1.34057 * 123.38137 * 0.02562 * 24 23 22 26 26 H 0.97001 * 120.20712 * 180.02562 * 25 24 23 27 27 C 1.36864 * 119.57102 * 359.97438 * 25 24 23 28 28 N 1.31633 * 135.95811 * 180.02562 * 27 25 24 29 29 C 1.33528 * 110.83696 * 179.97438 * 28 27 25 30 30 C 1.36074 * 110.92464 * 0.02562 * 29 28 27 31 31 C 1.39539 * 120.60344 * 186.73979 * 22 20 19 32 32 H 0.97000 * 120.00204 * 0.02562 * 1 2 3 33 33 H 1.09004 * 109.95404 * 66.16035 * 10 9 7 34 34 H 1.09000 * 109.99055 * 304.93681 * 10 9 7 35 35 H 1.09003 * 110.98820 * 264.50598 * 11 10 9 36 36 H 1.08997 * 110.98764 * 140.69587 * 11 10 9 37 37 H 1.09000 * 109.88391 * 64.58820 * 16 14 9 38 38 H 1.09002 * 109.88807 * 303.57710 * 16 14 9 39 39 H 1.08995 * 109.07116 * 63.56555 * 17 16 14 40 40 H 1.09002 * 109.06991 * 182.58483 * 17 16 14 41 41 H 1.09013 * 109.15721 * 168.93419 * 18 17 16 42 42 H 1.08997 * 109.16450 * 288.16693 * 18 17 16 43 43 H 1.08005 * 118.30757 * 180.02562 * 24 23 22 44 44 H 1.07999 * 124.53491 * 180.02562 * 29 28 27 45 45 H 1.08003 * 126.71959 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4475 2.6527 0.6999 6 1 3.5476 1.4403 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 -0.1485 -2.5576 0.0005 11 6 -0.4303 -4.0798 0.1440 12 6 0.8713 -4.5772 0.7865 13 1 0.8889 -4.3638 1.8553 14 6 1.9165 -3.7167 0.0190 15 1 1.9653 -4.0702 -1.0109 16 6 3.2598 -3.9406 0.6730 17 6 3.6484 -5.4102 0.4347 18 6 2.5847 -6.3652 0.9720 19 7 1.2345 -5.9637 0.5231 20 6 0.3956 -6.8226 -0.0893 21 8 -0.7319 -6.4717 -0.3734 22 6 0.8502 -8.1992 -0.4169 23 7 2.0338 -8.6443 0.0117 24 6 2.4731 -9.8477 -0.2524 25 7 1.7834 -10.7430 -0.9735 26 1 2.1535 -11.6237 -1.1413 27 6 0.5533 -10.4065 -1.4703 28 7 -0.3720 -11.0043 -2.1909 29 6 -1.4125 -10.1929 -2.3957 30 6 -1.2119 -8.9858 -1.8005 31 6 0.0453 -9.0521 -1.1731 32 1 -0.4850 0.8400 -0.0004 33 1 -0.5654 -2.1887 -0.9366 34 1 -0.5858 -2.0174 0.8403 35 1 -0.5857 -4.5417 -0.8310 36 1 -1.2826 -4.2590 0.7995 37 1 3.1884 -3.7450 1.7430 38 1 4.0046 -3.2829 0.2250 39 1 3.7693 -5.5776 -0.6356 40 1 4.5946 -5.6142 0.9359 41 1 2.7955 -7.3733 0.6145 42 1 2.6155 -6.3586 2.0615 43 1 3.4415 -10.1348 0.1301 44 1 -2.2950 -10.4591 -2.9584 45 1 -1.8879 -8.1435 -1.8047 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049573636.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:35 Heat of formation + Delta-G solvation = 129.546749 kcal Electronic energy + Delta-G solvation = -30371.293962 eV Core-core repulsion = 26392.291937 eV Total energy + Delta-G solvation = -3979.002025 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.21304 -40.22875 -38.95136 -37.80119 -35.76117 -34.96276 -32.60820 -32.08141 -30.77558 -29.40345 -28.86724 -28.13554 -26.13448 -24.46493 -24.20757 -23.62279 -21.74192 -21.41313 -20.77744 -19.91078 -19.33985 -18.60805 -17.89603 -17.00037 -16.59278 -16.13441 -16.06761 -15.48254 -15.24946 -14.82377 -14.63082 -14.24687 -13.98909 -13.65593 -13.41720 -13.30164 -13.15578 -12.95988 -12.53049 -12.43566 -12.18484 -11.91897 -11.85135 -11.64044 -11.30598 -10.88195 -10.82647 -10.60676 -10.43890 -10.10587 -10.04080 -9.90850 -9.81427 -9.60097 -9.57754 -9.03520 -8.88211 -8.56875 -8.24527 -8.07163 -6.79681 -5.67027 -3.00966 -0.51912 1.04891 1.84351 2.54605 2.88224 3.17400 3.38804 3.42346 3.46841 3.49020 3.50758 3.81044 4.17217 4.45388 4.52535 4.60063 4.93670 5.08208 5.22755 5.29518 5.42264 5.48809 5.57419 5.67135 5.72149 5.77084 5.88859 6.01970 6.07201 6.09682 6.14709 6.23826 6.31468 6.34452 6.44642 6.53600 6.60253 6.75636 6.77078 6.82153 6.91044 7.09661 7.19464 7.59528 7.64653 7.68460 7.70459 7.86564 8.25048 8.28948 9.22663 9.86183 10.53749 11.44932 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.021542 B = 0.003036 C = 0.002759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.496629 B = 9220.936151 C =10145.706879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.008 4.008 3 Si 0.910 3.090 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.226 4.226 8 H 0.078 0.922 9 N -0.593 5.593 10 C 0.174 3.826 11 C -0.131 4.131 12 C 0.113 3.887 13 H 0.082 0.918 14 C 0.160 3.840 15 H 0.017 0.983 16 C -0.117 4.117 17 C -0.125 4.125 18 C 0.055 3.945 19 N -0.571 5.571 20 C 0.561 3.439 21 O -0.506 6.506 22 C 0.207 3.793 23 N -0.509 5.509 24 C 0.346 3.654 25 N -0.518 5.518 26 H 0.427 0.573 27 C 0.251 3.749 28 N -0.516 5.516 29 C 0.057 3.943 30 C -0.188 4.188 31 C -0.153 4.153 32 H 0.252 0.748 33 H 0.040 0.960 34 H 0.056 0.944 35 H 0.079 0.921 36 H 0.063 0.937 37 H 0.062 0.938 38 H 0.064 0.936 39 H 0.058 0.942 40 H 0.070 0.930 41 H 0.157 0.843 42 H 0.059 0.941 43 H 0.221 0.779 44 H 0.168 0.832 45 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.402 -23.970 1.363 25.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.204 4.204 3 Si 0.740 3.260 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.354 4.354 8 H 0.096 0.904 9 N -0.318 5.318 10 C 0.050 3.950 11 C -0.169 4.169 12 C 0.009 3.991 13 H 0.100 0.900 14 C 0.051 3.949 15 H 0.034 0.966 16 C -0.156 4.156 17 C -0.164 4.164 18 C -0.067 4.067 19 N -0.302 5.302 20 C 0.345 3.655 21 O -0.381 6.381 22 C 0.073 3.927 23 N -0.230 5.230 24 C 0.064 3.936 25 N -0.122 5.122 26 H 0.266 0.734 27 C -0.004 4.004 28 N -0.237 5.237 29 C -0.085 4.085 30 C -0.211 4.211 31 C -0.165 4.165 32 H 0.063 0.937 33 H 0.058 0.942 34 H 0.074 0.926 35 H 0.097 0.903 36 H 0.082 0.918 37 H 0.081 0.919 38 H 0.083 0.917 39 H 0.077 0.923 40 H 0.089 0.911 41 H 0.173 0.827 42 H 0.077 0.923 43 H 0.237 0.763 44 H 0.185 0.815 45 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 7.068 -23.890 1.233 24.944 hybrid contribution 0.257 0.940 -0.116 0.982 sum 7.326 -22.950 1.117 24.116 Atomic orbital electron populations 1.69940 1.04873 1.25036 1.56848 1.24804 0.95667 0.97602 1.02329 0.86154 0.78559 0.83712 0.77534 1.21672 1.21716 1.20742 1.19003 0.90347 0.82295 1.43804 0.90381 1.44239 1.01703 0.99372 1.86500 1.21725 0.83487 0.88640 1.01148 1.22961 0.94662 0.98072 1.01243 1.22560 0.98735 0.78239 0.99519 0.90024 1.20836 0.91387 0.87096 0.95630 0.96567 1.21448 0.98315 0.94766 1.01059 1.21869 0.97915 0.95319 1.01272 1.23250 0.80254 1.03896 0.99344 1.47924 1.15557 1.10923 1.55819 1.17765 0.85223 0.82885 0.79629 1.90803 1.18661 1.75498 1.53140 1.21591 0.87674 0.94291 0.89117 1.67704 1.15683 1.12212 1.27421 1.25077 0.96613 0.84585 0.87326 1.41748 1.13616 1.17358 1.39492 0.73388 1.20524 0.87955 0.92289 0.99595 1.69517 1.01556 1.33656 1.18959 1.22680 0.96138 0.90409 0.99283 1.21665 0.96149 1.00443 1.02864 1.20809 0.98449 0.93459 1.03807 0.93732 0.94150 0.92553 0.90250 0.91820 0.91891 0.91681 0.92298 0.91130 0.82727 0.92297 0.76255 0.81515 0.82697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.38 10.46 55.49 0.58 -26.80 16 2 C -0.01 -0.22 5.49 -17.43 -0.10 -0.31 16 3 Si 0.91 22.20 29.55 -169.99 -5.02 17.18 16 4 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 5 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.23 -6.28 9.95 -15.06 -0.15 -6.43 16 8 H 0.08 2.08 7.36 -52.49 -0.39 1.69 16 9 N -0.59 -15.33 3.36 -162.90 -0.55 -15.88 16 10 C 0.17 4.44 5.48 -1.69 -0.01 4.43 16 11 C -0.13 -2.80 5.00 -25.19 -0.13 -2.92 16 12 C 0.11 2.19 3.28 -66.72 -0.22 1.97 16 13 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 14 C 0.16 3.37 2.61 -68.08 -0.18 3.19 16 15 H 0.02 0.38 8.06 -51.93 -0.42 -0.03 16 16 C -0.12 -2.02 5.50 -27.25 -0.15 -2.17 16 17 C -0.12 -1.60 5.93 -26.42 -0.16 -1.76 16 18 C 0.05 0.68 6.22 -3.45 -0.02 0.65 16 19 N -0.57 -9.22 2.91 -164.71 -0.48 -9.70 16 20 C 0.56 9.31 7.66 -11.97 -0.09 9.22 16 21 O -0.51 -9.78 12.37 5.40 0.07 -9.71 16 22 C 0.21 2.74 6.76 -82.36 -0.56 2.19 16 23 N -0.51 -4.57 6.11 -10.67 -0.07 -4.64 16 24 C 0.35 1.48 12.24 -91.01 -1.11 0.37 16 25 N -0.52 -2.83 5.32 -12.02 -0.06 -2.89 16 26 H 0.43 0.66 8.93 -40.82 -0.36 0.29 16 27 C 0.25 2.82 8.71 -154.20 -1.34 1.48 16 28 N -0.52 -6.71 11.16 -10.91 -0.12 -6.83 16 29 C 0.06 0.72 11.70 -17.59 -0.21 0.52 16 30 C -0.19 -2.68 10.26 -39.44 -0.40 -3.08 16 31 C -0.15 -2.11 6.19 -104.64 -0.65 -2.76 16 32 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 33 H 0.04 1.13 7.81 -51.93 -0.41 0.72 16 34 H 0.06 1.56 7.19 -51.93 -0.37 1.18 16 35 H 0.08 1.77 6.28 -51.93 -0.33 1.44 16 36 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 37 H 0.06 1.09 8.12 -51.93 -0.42 0.67 16 38 H 0.06 1.17 7.74 -51.93 -0.40 0.77 16 39 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 40 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.16 1.57 3.58 -93.21 -0.33 1.24 16 42 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.22 -0.42 8.06 -52.48 -0.42 -0.85 16 44 H 0.17 1.64 8.06 -52.49 -0.42 1.21 16 45 H 0.16 2.30 7.40 -52.48 -0.39 1.91 16 LS Contribution 353.13 15.07 5.32 5.32 Total: -1.00 -37.18 353.13 -11.72 -48.89 By element: Atomic # 1 Polarization: 6.39 SS G_CDS: -5.91 Total: 0.48 kcal Atomic # 6 Polarization: 10.05 SS G_CDS: -5.47 Total: 4.58 kcal Atomic # 7 Polarization: -66.04 SS G_CDS: -0.70 Total: -66.74 kcal Atomic # 8 Polarization: -9.78 SS G_CDS: 0.07 Total: -9.71 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -37.18 -11.72 -48.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049573636.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.437 kcal (2) G-P(sol) polarization free energy of solvation -37.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 141.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.890 kcal (6) G-S(sol) free energy of system = (1) + (5) 129.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds