Wall clock time and date at job start Sat Apr 11 2020 06:19:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86801 * 119.99859 * 2 1 4 4 H 1.48500 * 109.47044 * 269.99297 * 3 2 1 5 5 H 1.48499 * 109.47272 * 29.99223 * 3 2 1 6 6 H 1.48495 * 109.47400 * 149.99830 * 3 2 1 7 7 C 1.38812 * 120.00522 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00567 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99584 * 0.02562 * 7 2 1 10 10 C 1.48389 * 126.56188 * 359.97438 * 9 7 2 11 11 C 1.55471 * 106.97520 * 185.53783 * 10 9 7 12 12 C 1.53440 * 101.67103 * 22.59824 * 11 10 9 13 13 H 1.09001 * 111.14800 * 78.81718 * 12 11 10 14 14 C 1.45429 * 126.02166 * 180.87296 * 9 7 2 15 15 H 1.09000 * 107.60848 * 264.00135 * 14 9 7 16 16 C 1.51073 * 120.14508 * 29.03088 * 14 9 7 17 17 C 1.53872 * 107.40136 * 184.08047 * 16 14 9 18 18 C 1.52716 * 111.51997 * 303.03942 * 17 16 14 19 19 N 1.45727 * 116.36966 * 207.27818 * 12 11 10 20 20 C 1.34774 * 122.23109 * 351.00098 * 19 12 11 21 21 O 1.21458 * 119.99744 * 355.80485 * 20 19 12 22 22 C 1.48631 * 120.00330 * 175.81701 * 20 19 12 23 23 N 1.33511 * 120.60501 * 7.01566 * 22 20 19 24 24 C 1.30802 * 122.65587 * 179.97438 * 23 22 20 25 25 N 1.34057 * 123.38137 * 0.02562 * 24 23 22 26 26 H 0.97001 * 120.20712 * 180.02562 * 25 24 23 27 27 C 1.36864 * 119.57102 * 359.97438 * 25 24 23 28 28 N 1.31633 * 135.95811 * 180.02562 * 27 25 24 29 29 C 1.33528 * 110.83696 * 179.97438 * 28 27 25 30 30 C 1.36074 * 110.92464 * 0.02562 * 29 28 27 31 31 C 1.39539 * 120.60344 * 186.73979 * 22 20 19 32 32 H 0.97000 * 120.00204 * 0.02562 * 1 2 3 33 33 H 1.09004 * 109.95404 * 66.16035 * 10 9 7 34 34 H 1.09000 * 109.99055 * 304.93681 * 10 9 7 35 35 H 1.09003 * 110.98820 * 264.50598 * 11 10 9 36 36 H 1.08997 * 110.98764 * 140.69587 * 11 10 9 37 37 H 1.09000 * 109.88391 * 64.58820 * 16 14 9 38 38 H 1.09002 * 109.88807 * 303.57710 * 16 14 9 39 39 H 1.08995 * 109.07116 * 63.56555 * 17 16 14 40 40 H 1.09002 * 109.06991 * 182.58483 * 17 16 14 41 41 H 1.09013 * 109.15721 * 168.93419 * 18 17 16 42 42 H 1.08997 * 109.16450 * 288.16693 * 18 17 16 43 43 H 1.08005 * 118.30757 * 180.02562 * 24 23 22 44 44 H 1.07999 * 124.53491 * 180.02562 * 29 28 27 45 45 H 1.08003 * 126.71959 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4475 2.6527 0.6999 6 1 3.5476 1.4403 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 -0.1485 -2.5576 0.0005 11 6 -0.4303 -4.0798 0.1440 12 6 0.8713 -4.5772 0.7865 13 1 0.8889 -4.3638 1.8553 14 6 1.9165 -3.7167 0.0190 15 1 1.9653 -4.0702 -1.0109 16 6 3.2598 -3.9406 0.6730 17 6 3.6484 -5.4102 0.4347 18 6 2.5847 -6.3652 0.9720 19 7 1.2345 -5.9637 0.5231 20 6 0.3956 -6.8226 -0.0893 21 8 -0.7319 -6.4717 -0.3734 22 6 0.8502 -8.1992 -0.4169 23 7 2.0338 -8.6443 0.0117 24 6 2.4731 -9.8477 -0.2524 25 7 1.7834 -10.7430 -0.9735 26 1 2.1535 -11.6237 -1.1413 27 6 0.5533 -10.4065 -1.4703 28 7 -0.3720 -11.0043 -2.1909 29 6 -1.4125 -10.1929 -2.3957 30 6 -1.2119 -8.9858 -1.8005 31 6 0.0453 -9.0521 -1.1731 32 1 -0.4850 0.8400 -0.0004 33 1 -0.5654 -2.1887 -0.9366 34 1 -0.5858 -2.0174 0.8403 35 1 -0.5857 -4.5417 -0.8310 36 1 -1.2826 -4.2590 0.7995 37 1 3.1884 -3.7450 1.7430 38 1 4.0046 -3.2829 0.2250 39 1 3.7693 -5.5776 -0.6356 40 1 4.5946 -5.6142 0.9359 41 1 2.7955 -7.3733 0.6145 42 1 2.6155 -6.3586 2.0615 43 1 3.4415 -10.1348 0.1301 44 1 -2.2950 -10.4591 -2.9584 45 1 -1.8879 -8.1435 -1.8047 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049573636.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:34 Heat of formation + Delta-G solvation = 104.701809 kcal Electronic energy + Delta-G solvation = -30372.371319 eV Core-core repulsion = 26392.291937 eV Total energy + Delta-G solvation = -3980.079382 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.02558 -41.58724 -39.75475 -39.28840 -37.02544 -36.07372 -34.21154 -33.82302 -31.65378 -30.92796 -30.10713 -29.64647 -27.31760 -26.32858 -25.38449 -24.45311 -22.95200 -22.81546 -22.02726 -21.49134 -20.64151 -19.39878 -19.00196 -18.42382 -17.73141 -17.23660 -17.08926 -16.90820 -16.61260 -16.27946 -16.02943 -15.70416 -15.32400 -15.03895 -14.85335 -14.36334 -14.21710 -14.11704 -13.99752 -13.90322 -13.48767 -13.36569 -13.17027 -12.91829 -12.72793 -12.67653 -12.44993 -12.28029 -12.04976 -11.77540 -11.74729 -11.64801 -11.47228 -10.97416 -10.83123 -10.70746 -10.15324 -9.76072 -9.56111 -9.02745 -8.91784 -7.83976 -5.21277 -1.36686 0.37445 1.28432 1.43392 1.45804 1.48450 1.56905 1.70019 2.24658 2.49594 2.52267 2.66898 2.95819 3.34541 3.36087 3.49603 3.65469 3.86396 3.98111 4.04822 4.11286 4.18800 4.28133 4.34470 4.38071 4.41725 4.57577 4.59482 4.75014 4.86041 4.91782 5.05314 5.10500 5.15717 5.19122 5.25651 5.34188 5.42669 5.46726 5.50761 5.57179 5.59635 5.68850 5.82242 5.95048 6.17246 6.31601 6.49216 6.80755 6.99283 7.05151 7.75004 8.44190 9.27813 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.021542 B = 0.003036 C = 0.002759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.496629 B = 9220.936151 C =10145.706879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C -0.071 4.071 3 Si 0.980 3.020 4 H -0.289 1.289 5 H -0.296 1.296 6 H -0.262 1.262 7 C -0.234 4.234 8 H 0.090 0.910 9 N -0.613 5.613 10 C 0.186 3.814 11 C -0.114 4.114 12 C 0.128 3.872 13 H 0.084 0.916 14 C 0.155 3.845 15 H -0.005 1.005 16 C -0.114 4.114 17 C -0.114 4.114 18 C 0.050 3.950 19 N -0.572 5.572 20 C 0.550 3.450 21 O -0.548 6.548 22 C 0.212 3.788 23 N -0.522 5.522 24 C 0.385 3.615 25 N -0.498 5.498 26 H 0.453 0.547 27 C 0.260 3.740 28 N -0.535 5.535 29 C 0.053 3.947 30 C -0.224 4.224 31 C -0.191 4.191 32 H 0.246 0.754 33 H 0.000 1.000 34 H 0.027 0.973 35 H 0.067 0.933 36 H 0.066 0.934 37 H 0.064 0.936 38 H 0.056 0.944 39 H 0.056 0.944 40 H 0.114 0.886 41 H 0.187 0.813 42 H 0.075 0.925 43 H 0.300 0.700 44 H 0.185 0.815 45 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.146 -27.428 2.705 30.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.605 5.605 2 C -0.263 4.263 3 Si 0.808 3.192 4 H -0.216 1.216 5 H -0.223 1.223 6 H -0.187 1.187 7 C -0.363 4.363 8 H 0.108 0.892 9 N -0.338 5.338 10 C 0.060 3.940 11 C -0.153 4.153 12 C 0.023 3.977 13 H 0.101 0.899 14 C 0.047 3.953 15 H 0.013 0.987 16 C -0.152 4.152 17 C -0.153 4.153 18 C -0.070 4.070 19 N -0.303 5.303 20 C 0.336 3.664 21 O -0.425 6.425 22 C 0.077 3.923 23 N -0.243 5.243 24 C 0.105 3.895 25 N -0.103 5.103 26 H 0.297 0.703 27 C 0.005 3.995 28 N -0.256 5.256 29 C -0.089 4.089 30 C -0.249 4.249 31 C -0.203 4.203 32 H 0.055 0.945 33 H 0.018 0.982 34 H 0.045 0.955 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.082 0.918 38 H 0.074 0.926 39 H 0.075 0.925 40 H 0.132 0.868 41 H 0.202 0.798 42 H 0.093 0.907 43 H 0.315 0.685 44 H 0.202 0.798 45 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 11.902 -27.447 2.582 30.027 hybrid contribution -1.111 1.912 -0.527 2.274 sum 10.791 -25.534 2.055 27.797 Atomic orbital electron populations 1.70179 1.06563 1.25289 1.58432 1.25722 0.96554 1.01256 1.02775 0.85049 0.77826 0.78953 0.77338 1.21622 1.22279 1.18672 1.19441 0.91068 0.83169 1.42577 0.89239 1.44497 1.01918 1.00979 1.86414 1.21407 0.83863 0.90935 0.97764 1.22684 0.96444 0.95081 1.01057 1.22151 0.96204 0.80507 0.98851 0.89865 1.21009 0.94310 0.84819 0.95135 0.98740 1.21462 0.95198 0.98165 1.00387 1.21868 0.99856 0.91722 1.01826 1.23696 0.77678 1.05187 1.00431 1.48026 1.17206 1.09194 1.55838 1.18367 0.84796 0.84434 0.78790 1.90778 1.20559 1.76794 1.54372 1.20992 0.89378 0.92232 0.89719 1.67406 1.13735 1.14941 1.28232 1.26590 0.97320 0.82187 0.83437 1.41889 1.11360 1.18892 1.38164 0.70340 1.20610 0.89373 0.90886 0.98663 1.69527 1.02154 1.33734 1.20217 1.22934 0.96946 0.89899 0.99128 1.21592 0.97245 1.00665 1.05351 1.20932 0.98834 0.95263 1.05277 0.94475 0.98196 0.95467 0.91475 0.91490 0.91757 0.92568 0.92537 0.86768 0.79806 0.90652 0.68534 0.79843 0.85118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.95 10.46 21.65 0.23 -59.73 16 2 C -0.07 -4.13 5.49 84.86 0.47 -3.66 16 3 Si 0.98 46.60 29.55 68.60 2.03 48.63 16 4 H -0.29 -13.62 7.11 99.48 0.71 -12.92 16 5 H -0.30 -14.22 7.11 99.48 0.71 -13.51 16 6 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 7 C -0.23 -13.31 9.95 84.03 0.84 -12.47 16 8 H 0.09 4.76 7.36 -2.91 -0.02 4.74 16 9 N -0.61 -33.10 3.36 -669.31 -2.25 -35.34 16 10 C 0.19 10.18 5.48 86.87 0.48 10.66 16 11 C -0.11 -5.23 5.00 31.59 0.16 -5.07 16 12 C 0.13 5.03 3.28 46.19 0.15 5.19 16 13 H 0.08 3.26 8.14 -2.39 -0.02 3.24 16 14 C 0.16 6.66 2.61 45.47 0.12 6.78 16 15 H 0.00 -0.23 8.06 -2.39 -0.02 -0.25 16 16 C -0.11 -3.73 5.50 30.26 0.17 -3.56 16 17 C -0.11 -2.47 5.93 30.79 0.18 -2.29 16 18 C 0.05 1.04 6.22 86.03 0.53 1.58 16 19 N -0.57 -17.97 2.91 -793.34 -2.31 -20.28 16 20 C 0.55 18.44 7.66 87.02 0.67 19.10 16 21 O -0.55 -22.57 12.37 -3.58 -0.04 -22.61 16 22 C 0.21 5.28 6.76 41.98 0.28 5.57 16 23 N -0.52 -6.82 6.11 -187.68 -1.15 -7.97 16 24 C 0.39 0.58 12.24 180.49 2.21 2.79 16 25 N -0.50 -2.69 5.32 -191.95 -1.02 -3.71 16 26 H 0.45 -1.51 8.93 -92.71 -0.83 -2.34 16 27 C 0.26 5.22 8.71 136.29 1.19 6.40 16 28 N -0.54 -13.33 11.16 -188.44 -2.10 -15.43 16 29 C 0.05 1.39 11.70 83.93 0.98 2.37 16 30 C -0.22 -6.87 10.26 22.36 0.23 -6.64 16 31 C -0.19 -5.20 6.19 -19.88 -0.12 -5.32 16 32 H 0.25 15.02 8.31 -92.71 -0.77 14.25 16 33 H 0.00 -0.01 7.81 -2.38 -0.02 -0.03 16 34 H 0.03 1.62 7.19 -2.39 -0.02 1.61 16 35 H 0.07 3.25 6.28 -2.39 -0.01 3.23 16 36 H 0.07 2.97 8.14 -2.39 -0.02 2.95 16 37 H 0.06 2.09 8.12 -2.39 -0.02 2.07 16 38 H 0.06 1.93 7.74 -2.39 -0.02 1.91 16 39 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 40 H 0.11 1.58 8.14 -2.39 -0.02 1.57 16 41 H 0.19 2.74 3.58 -83.89 -0.30 2.44 16 42 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 43 H 0.30 -4.29 8.06 -2.91 -0.02 -4.31 16 44 H 0.18 3.79 8.06 -2.91 -0.02 3.77 16 45 H 0.13 4.45 7.40 -2.91 -0.02 4.43 16 Total: -1.00 -92.19 353.13 1.83 -90.36 By element: Atomic # 1 Polarization: 4.72 SS G_CDS: -0.07 Total: 4.65 kcal Atomic # 6 Polarization: 12.90 SS G_CDS: 8.53 Total: 21.43 kcal Atomic # 7 Polarization: -133.85 SS G_CDS: -8.61 Total: -142.46 kcal Atomic # 8 Polarization: -22.57 SS G_CDS: -0.04 Total: -22.61 kcal Atomic # 14 Polarization: 46.60 SS G_CDS: 2.03 Total: 48.63 kcal Total: -92.19 1.83 -90.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049573636.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 195.062 kcal (2) G-P(sol) polarization free energy of solvation -92.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.361 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds