Wall clock time and date at job start Sat Apr 11 2020 06:19:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86803 * 119.99961 * 2 1 4 4 H 1.48503 * 109.47053 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47117 * 300.00132 * 3 2 1 6 6 H 1.48495 * 109.47051 * 60.00071 * 3 2 1 7 7 C 1.38811 * 120.00159 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00444 * 180.02562 * 7 2 1 9 9 N 1.36940 * 120.00022 * 359.97438 * 7 2 1 10 10 C 1.46885 * 125.57807 * 359.97095 * 9 7 2 11 11 C 1.54057 * 107.70442 * 177.05974 * 10 9 7 12 12 C 1.54068 * 103.74595 * 342.87751 * 11 10 9 13 13 H 1.08994 * 109.16301 * 274.17973 * 12 11 10 14 14 C 1.47655 * 125.58249 * 180.02562 * 9 7 2 15 15 H 1.08997 * 110.56377 * 321.60273 * 14 9 7 16 16 C 1.52923 * 107.99525 * 83.54882 * 14 9 7 17 17 C 1.52947 * 109.79373 * 171.83902 * 16 14 9 18 18 C 1.53377 * 108.38694 * 293.86912 * 17 16 14 19 19 N 1.44197 * 111.76137 * 153.24706 * 12 11 10 20 20 C 1.34773 * 117.75884 * 93.48122 * 19 12 11 21 21 O 1.21452 * 119.99927 * 179.12915 * 20 19 12 22 22 C 1.48638 * 119.99884 * 359.13277 * 20 19 12 23 23 N 1.33508 * 120.60560 * 352.86556 * 22 20 19 24 24 C 1.30804 * 122.65760 * 180.02562 * 23 22 20 25 25 N 1.34051 * 123.37792 * 359.97438 * 24 23 22 26 26 H 0.97007 * 120.21296 * 180.02562 * 25 24 23 27 27 C 1.36871 * 119.57395 * 0.04523 * 25 24 23 28 28 N 1.31638 * 135.95763 * 179.97438 * 27 25 24 29 29 C 1.33523 * 110.83333 * 180.02562 * 28 27 25 30 30 C 1.36079 * 110.93078 * 359.97438 * 29 28 27 31 31 C 1.39537 * 120.60276 * 172.89450 * 22 20 19 32 32 H 0.96997 * 120.00280 * 359.97438 * 1 2 3 33 33 H 1.09009 * 109.80763 * 57.51465 * 10 9 7 34 34 H 1.08992 * 109.81341 * 296.61535 * 10 9 7 35 35 H 1.09002 * 110.56952 * 224.31594 * 11 10 9 36 36 H 1.09002 * 110.69261 * 101.50775 * 11 10 9 37 37 H 1.09003 * 109.42061 * 291.93496 * 16 14 9 38 38 H 1.09003 * 109.42097 * 51.73929 * 16 14 9 39 39 H 1.08995 * 109.63352 * 53.70295 * 17 16 14 40 40 H 1.08997 * 109.63313 * 174.10277 * 17 16 14 41 41 H 1.09007 * 109.63863 * 294.06376 * 18 17 16 42 42 H 1.08998 * 109.45347 * 174.00172 * 18 17 16 43 43 H 1.08002 * 118.31324 * 180.02562 * 24 23 22 44 44 H 1.07996 * 124.53570 * 179.73149 * 29 28 27 45 45 H 1.08000 * 126.72835 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1363 -2.5309 0.0006 11 6 -0.4601 -4.0351 -0.0751 12 6 0.8586 -4.6697 -0.5567 13 1 0.8955 -4.6353 -1.6455 14 6 1.9360 -3.7325 -0.0005 15 1 2.8225 -3.7505 -0.6344 16 6 2.2801 -4.0952 1.4447 17 6 2.7269 -5.5560 1.5198 18 6 1.5289 -6.4470 1.1685 19 7 0.9839 -6.0384 -0.1205 20 6 0.5626 -7.0056 -0.9592 21 8 0.6637 -8.1729 -0.6396 22 6 -0.0256 -6.6436 -2.2754 23 7 -0.2732 -5.3679 -2.5815 24 6 -0.7901 -5.0044 -3.7268 25 7 -1.1179 -5.8704 -4.6961 26 1 -1.4986 -5.5499 -5.5288 27 6 -0.9125 -7.2098 -4.5031 28 7 -1.1062 -8.3074 -5.2035 29 6 -0.7173 -9.3841 -4.5163 30 6 -0.2343 -9.0322 -3.2937 31 6 -0.3296 -7.6310 -3.2133 32 1 -0.4850 0.8400 0.0004 33 1 -0.5582 -2.0182 -0.8639 34 1 -0.5479 -2.1101 0.9179 35 1 -1.2586 -4.2193 -0.7939 36 1 -0.7342 -4.4201 0.9072 37 1 3.0856 -3.4513 1.7979 38 1 1.4012 -3.9523 2.0733 39 1 3.5359 -5.7285 0.8101 40 1 3.0706 -5.7824 2.5291 41 1 0.7609 -6.3475 1.9356 42 1 1.8534 -7.4860 1.1124 43 1 -0.9608 -3.9522 -3.9008 44 1 -0.7815 -10.3988 -4.8803 45 1 0.1469 -9.6981 -2.5338 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049573637.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:38 Heat of formation + Delta-G solvation = 126.062881 kcal Electronic energy + Delta-G solvation = -30823.831305 eV Core-core repulsion = 26844.678208 eV Total energy + Delta-G solvation = -3979.153097 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.10886 -40.35887 -38.77282 -38.08558 -35.40427 -35.08778 -32.78472 -32.11451 -30.61387 -29.23076 -28.93548 -28.36698 -26.04738 -24.56184 -24.12886 -23.51410 -22.08976 -21.32320 -20.63584 -20.01179 -18.85920 -18.45589 -17.84775 -17.06329 -16.69941 -16.30132 -15.93332 -15.69396 -15.11509 -14.84161 -14.72280 -14.18640 -13.84554 -13.76424 -13.35778 -13.31015 -13.10701 -12.86458 -12.58050 -12.40061 -12.15713 -12.02195 -11.64228 -11.50934 -11.03671 -10.98880 -10.80509 -10.66888 -10.53050 -10.29203 -10.17399 -10.07791 -9.87678 -9.74309 -9.66250 -9.08973 -8.71298 -8.63554 -8.27640 -7.98782 -6.88577 -5.75901 -3.09560 -0.39275 1.25508 2.04012 2.53687 2.91808 3.27688 3.35031 3.41879 3.43444 3.52827 3.65523 3.93812 4.35592 4.45157 4.62812 4.77816 5.02876 5.18926 5.23941 5.34118 5.36550 5.44176 5.49193 5.62081 5.65225 5.84160 5.85796 6.00777 6.10188 6.14494 6.17969 6.22978 6.32695 6.35202 6.39345 6.47553 6.58177 6.62940 6.85638 6.88352 6.92475 7.08025 7.28746 7.54260 7.55323 7.63224 7.79882 7.80778 8.14265 8.22171 9.17838 9.77394 10.42874 11.34732 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014719 B = 0.003799 C = 0.003178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1901.819807 B = 7368.956791 C = 8808.272468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.006 4.006 3 Si 0.909 3.091 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.223 4.223 8 H 0.077 0.923 9 N -0.595 5.595 10 C 0.183 3.817 11 C -0.141 4.141 12 C 0.104 3.896 13 H 0.141 0.859 14 C 0.159 3.841 15 H 0.052 0.948 16 C -0.132 4.132 17 C -0.130 4.130 18 C 0.111 3.889 19 N -0.560 5.560 20 C 0.556 3.444 21 O -0.526 6.526 22 C 0.200 3.800 23 N -0.491 5.491 24 C 0.349 3.651 25 N -0.517 5.517 26 H 0.427 0.573 27 C 0.254 3.746 28 N -0.521 5.521 29 C 0.057 3.943 30 C -0.197 4.197 31 C -0.155 4.155 32 H 0.251 0.749 33 H 0.052 0.948 34 H 0.036 0.964 35 H 0.064 0.936 36 H 0.048 0.952 37 H 0.061 0.939 38 H 0.061 0.939 39 H 0.063 0.937 40 H 0.071 0.929 41 H 0.064 0.936 42 H 0.088 0.912 43 H 0.225 0.775 44 H 0.165 0.835 45 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.673 -11.730 -6.231 13.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.202 4.202 3 Si 0.740 3.260 4 H -0.206 1.206 5 H -0.218 1.218 6 H -0.219 1.219 7 C -0.352 4.352 8 H 0.095 0.905 9 N -0.319 5.319 10 C 0.058 3.942 11 C -0.180 4.180 12 C -0.001 4.001 13 H 0.157 0.843 14 C 0.051 3.949 15 H 0.070 0.930 16 C -0.172 4.172 17 C -0.169 4.169 18 C -0.011 4.011 19 N -0.290 5.290 20 C 0.341 3.659 21 O -0.402 6.402 22 C 0.065 3.935 23 N -0.212 5.212 24 C 0.068 3.932 25 N -0.120 5.120 26 H 0.266 0.734 27 C 0.000 4.000 28 N -0.242 5.242 29 C -0.085 4.085 30 C -0.221 4.221 31 C -0.167 4.167 32 H 0.061 0.939 33 H 0.070 0.930 34 H 0.054 0.946 35 H 0.083 0.917 36 H 0.067 0.933 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.082 0.918 40 H 0.089 0.911 41 H 0.083 0.917 42 H 0.106 0.894 43 H 0.241 0.759 44 H 0.182 0.818 45 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -1.831 -11.659 -6.351 13.402 hybrid contribution 0.337 0.743 0.048 0.818 sum -1.494 -10.915 -6.303 12.693 Atomic orbital electron populations 1.69976 1.04786 1.24804 1.57213 1.24756 0.95671 0.97477 1.02339 0.86093 0.78775 0.83964 0.77209 1.20569 1.21832 1.21855 1.19062 0.90434 0.82199 1.43470 0.90487 1.44502 1.01563 0.99176 1.86674 1.21011 0.84146 0.88077 1.00955 1.22902 0.96624 0.99057 0.99462 1.22347 0.96478 0.78343 1.02901 0.84312 1.20970 0.94116 0.86324 0.93536 0.93003 1.22137 1.01449 0.93493 1.00165 1.21893 0.96935 0.96628 1.01427 1.21510 0.96053 0.99653 0.83854 1.47148 1.58596 1.07025 1.16188 1.17988 0.79414 0.85531 0.82988 1.90738 1.55966 1.18170 1.75374 1.21338 0.90710 0.87805 0.93636 1.68618 1.18722 1.17260 1.16631 1.25365 0.88496 0.96486 0.82871 1.41939 1.47185 1.04319 1.18600 0.73389 1.20531 1.00947 0.85253 0.93283 1.69516 1.26078 0.95687 1.32936 1.22623 0.97650 0.96523 0.91744 1.21542 1.08322 0.92331 0.99856 1.20801 1.05925 0.96049 0.93964 0.93888 0.93028 0.94588 0.91687 0.93317 0.92000 0.91991 0.91782 0.91084 0.91740 0.89368 0.75922 0.81771 0.83135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.21 10.29 55.49 0.57 -24.64 16 2 C -0.01 -0.16 5.49 -17.43 -0.10 -0.26 16 3 Si 0.91 20.99 29.55 -169.99 -5.02 15.96 16 4 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 7 C -0.22 -5.75 10.27 -15.06 -0.15 -5.90 16 8 H 0.08 1.95 7.83 -52.48 -0.41 1.53 16 9 N -0.59 -13.72 2.94 -163.74 -0.48 -14.20 16 10 C 0.18 4.05 5.39 -3.28 -0.02 4.03 16 11 C -0.14 -2.48 6.17 -25.62 -0.16 -2.64 16 12 C 0.10 1.72 2.25 -68.47 -0.15 1.57 16 13 H 0.14 2.28 4.46 -78.50 -0.35 1.93 16 14 C 0.16 3.02 3.29 -67.21 -0.22 2.79 16 15 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 16 C -0.13 -2.28 5.31 -26.80 -0.14 -2.42 16 17 C -0.13 -1.79 6.12 -26.56 -0.16 -1.96 16 18 C 0.11 1.58 6.28 -4.23 -0.03 1.56 16 19 N -0.56 -8.78 2.80 -168.13 -0.47 -9.25 16 20 C 0.56 9.02 7.60 -11.97 -0.09 8.93 16 21 O -0.53 -9.34 14.68 5.41 0.08 -9.26 16 22 C 0.20 2.94 6.61 -82.36 -0.54 2.40 16 23 N -0.49 -6.21 4.55 -10.67 -0.05 -6.25 16 24 C 0.35 2.97 12.24 -91.02 -1.11 1.85 16 25 N -0.52 -4.27 5.32 -12.02 -0.06 -4.34 16 26 H 0.43 1.91 8.93 -40.82 -0.36 1.54 16 27 C 0.25 3.28 8.71 -154.19 -1.34 1.93 16 28 N -0.52 -7.36 11.16 -10.91 -0.12 -7.48 16 29 C 0.06 0.76 11.70 -17.59 -0.21 0.55 16 30 C -0.20 -2.84 10.26 -39.44 -0.40 -3.25 16 31 C -0.15 -2.29 6.19 -104.64 -0.65 -2.94 16 32 H 0.25 6.73 8.31 -40.82 -0.34 6.39 16 33 H 0.05 1.24 7.25 -51.92 -0.38 0.86 16 34 H 0.04 0.91 7.60 -51.93 -0.39 0.52 16 35 H 0.06 1.05 6.96 -51.93 -0.36 0.69 16 36 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 38 H 0.06 1.15 8.02 -51.93 -0.42 0.74 16 39 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 42 H 0.09 1.23 6.95 -51.93 -0.36 0.87 16 43 H 0.22 0.96 8.06 -52.49 -0.42 0.54 16 44 H 0.17 1.65 8.06 -52.49 -0.42 1.23 16 45 H 0.15 2.15 7.40 -52.49 -0.39 1.76 16 LS Contribution 355.16 15.07 5.35 5.35 Total: -1.00 -33.32 355.16 -11.63 -44.95 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: -5.94 Total: 2.92 kcal Atomic # 6 Polarization: 11.73 SS G_CDS: -5.48 Total: 6.25 kcal Atomic # 7 Polarization: -65.56 SS G_CDS: -0.61 Total: -66.18 kcal Atomic # 8 Polarization: -9.34 SS G_CDS: 0.08 Total: -9.26 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -33.32 -11.63 -44.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049573637.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.015 kcal (2) G-P(sol) polarization free energy of solvation -33.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 137.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.952 kcal (6) G-S(sol) free energy of system = (1) + (5) 126.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds