Wall clock time and date at job start Sat Apr 11 2020 06:19:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86803 * 119.99961 * 2 1 4 4 H 1.48503 * 109.47053 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47117 * 300.00132 * 3 2 1 6 6 H 1.48495 * 109.47051 * 60.00071 * 3 2 1 7 7 C 1.38811 * 120.00159 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00444 * 180.02562 * 7 2 1 9 9 N 1.36940 * 120.00022 * 359.97438 * 7 2 1 10 10 C 1.46885 * 125.57807 * 359.97095 * 9 7 2 11 11 C 1.54057 * 107.70442 * 177.05974 * 10 9 7 12 12 C 1.54068 * 103.74595 * 342.87751 * 11 10 9 13 13 H 1.08994 * 109.16301 * 274.17973 * 12 11 10 14 14 C 1.47655 * 125.58249 * 180.02562 * 9 7 2 15 15 H 1.08997 * 110.56377 * 321.60273 * 14 9 7 16 16 C 1.52923 * 107.99525 * 83.54882 * 14 9 7 17 17 C 1.52947 * 109.79373 * 171.83902 * 16 14 9 18 18 C 1.53377 * 108.38694 * 293.86912 * 17 16 14 19 19 N 1.44197 * 111.76137 * 153.24706 * 12 11 10 20 20 C 1.34773 * 117.75884 * 93.48122 * 19 12 11 21 21 O 1.21452 * 119.99927 * 179.12915 * 20 19 12 22 22 C 1.48638 * 119.99884 * 359.13277 * 20 19 12 23 23 N 1.33508 * 120.60560 * 352.86556 * 22 20 19 24 24 C 1.30804 * 122.65760 * 180.02562 * 23 22 20 25 25 N 1.34051 * 123.37792 * 359.97438 * 24 23 22 26 26 H 0.97007 * 120.21296 * 180.02562 * 25 24 23 27 27 C 1.36871 * 119.57395 * 0.04523 * 25 24 23 28 28 N 1.31638 * 135.95763 * 179.97438 * 27 25 24 29 29 C 1.33523 * 110.83333 * 180.02562 * 28 27 25 30 30 C 1.36079 * 110.93078 * 359.97438 * 29 28 27 31 31 C 1.39537 * 120.60276 * 172.89450 * 22 20 19 32 32 H 0.96997 * 120.00280 * 359.97438 * 1 2 3 33 33 H 1.09009 * 109.80763 * 57.51465 * 10 9 7 34 34 H 1.08992 * 109.81341 * 296.61535 * 10 9 7 35 35 H 1.09002 * 110.56952 * 224.31594 * 11 10 9 36 36 H 1.09002 * 110.69261 * 101.50775 * 11 10 9 37 37 H 1.09003 * 109.42061 * 291.93496 * 16 14 9 38 38 H 1.09003 * 109.42097 * 51.73929 * 16 14 9 39 39 H 1.08995 * 109.63352 * 53.70295 * 17 16 14 40 40 H 1.08997 * 109.63313 * 174.10277 * 17 16 14 41 41 H 1.09007 * 109.63863 * 294.06376 * 18 17 16 42 42 H 1.08998 * 109.45347 * 174.00172 * 18 17 16 43 43 H 1.08002 * 118.31324 * 180.02562 * 24 23 22 44 44 H 1.07996 * 124.53570 * 179.73149 * 29 28 27 45 45 H 1.08000 * 126.72835 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1363 -2.5309 0.0006 11 6 -0.4601 -4.0351 -0.0751 12 6 0.8586 -4.6697 -0.5567 13 1 0.8955 -4.6353 -1.6455 14 6 1.9360 -3.7325 -0.0005 15 1 2.8225 -3.7505 -0.6344 16 6 2.2801 -4.0952 1.4447 17 6 2.7269 -5.5560 1.5198 18 6 1.5289 -6.4470 1.1685 19 7 0.9839 -6.0384 -0.1205 20 6 0.5626 -7.0056 -0.9592 21 8 0.6637 -8.1729 -0.6396 22 6 -0.0256 -6.6436 -2.2754 23 7 -0.2732 -5.3679 -2.5815 24 6 -0.7901 -5.0044 -3.7268 25 7 -1.1179 -5.8704 -4.6961 26 1 -1.4986 -5.5499 -5.5288 27 6 -0.9125 -7.2098 -4.5031 28 7 -1.1062 -8.3074 -5.2035 29 6 -0.7173 -9.3841 -4.5163 30 6 -0.2343 -9.0322 -3.2937 31 6 -0.3296 -7.6310 -3.2133 32 1 -0.4850 0.8400 0.0004 33 1 -0.5582 -2.0182 -0.8639 34 1 -0.5479 -2.1101 0.9179 35 1 -1.2586 -4.2193 -0.7939 36 1 -0.7342 -4.4201 0.9072 37 1 3.0856 -3.4513 1.7979 38 1 1.4012 -3.9523 2.0733 39 1 3.5359 -5.7285 0.8101 40 1 3.0706 -5.7824 2.5291 41 1 0.7609 -6.3475 1.9356 42 1 1.8534 -7.4860 1.1124 43 1 -0.9608 -3.9522 -3.9008 44 1 -0.7815 -10.3988 -4.8803 45 1 0.1469 -9.6981 -2.5338 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049573637.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:37 Heat of formation + Delta-G solvation = 107.399857 kcal Electronic energy + Delta-G solvation = -30824.640594 eV Core-core repulsion = 26844.678208 eV Total energy + Delta-G solvation = -3979.962386 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.08149 -41.61625 -39.71591 -39.50994 -36.62843 -36.34512 -34.07726 -33.92139 -31.61089 -30.69403 -30.21689 -29.79388 -27.19134 -26.32973 -25.36416 -24.47745 -23.35835 -22.53502 -21.85520 -21.57829 -19.99851 -19.45576 -19.03121 -18.73448 -17.68256 -17.45118 -17.02053 -16.88149 -16.70288 -16.26235 -16.05798 -15.62908 -15.18905 -14.96463 -14.81617 -14.40208 -14.21251 -14.11786 -13.93159 -13.66699 -13.48899 -13.44308 -13.09526 -12.82438 -12.64396 -12.63842 -12.25253 -12.22002 -11.96800 -11.84483 -11.60339 -11.54351 -11.44702 -11.33476 -10.81052 -10.60279 -10.30403 -9.80199 -9.50950 -8.99177 -8.77981 -7.75169 -5.09339 -1.36961 0.35312 1.25810 1.38336 1.50964 1.53126 1.61405 1.74672 2.27569 2.48539 2.54501 2.68280 2.97077 3.42604 3.45467 3.60342 3.78356 3.91160 4.00251 4.04749 4.07783 4.22037 4.25302 4.26301 4.40352 4.57892 4.63863 4.72363 4.81132 4.87016 4.88884 5.04265 5.06584 5.16008 5.18147 5.18948 5.36573 5.44146 5.54880 5.59713 5.61868 5.72566 5.80826 5.90440 5.95381 6.18751 6.30832 6.47043 6.82796 6.92349 7.21192 7.87229 8.51359 9.34029 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014719 B = 0.003799 C = 0.003178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1901.819807 B = 7368.956791 C = 8808.272468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C -0.058 4.058 3 Si 0.967 3.033 4 H -0.270 1.270 5 H -0.292 1.292 6 H -0.300 1.300 7 C -0.228 4.228 8 H 0.078 0.922 9 N -0.610 5.610 10 C 0.197 3.803 11 C -0.123 4.123 12 C 0.120 3.880 13 H 0.151 0.849 14 C 0.153 3.847 15 H 0.050 0.950 16 C -0.125 4.125 17 C -0.117 4.117 18 C 0.108 3.892 19 N -0.561 5.561 20 C 0.553 3.447 21 O -0.546 6.546 22 C 0.194 3.806 23 N -0.518 5.518 24 C 0.372 3.628 25 N -0.495 5.495 26 H 0.449 0.551 27 C 0.254 3.746 28 N -0.539 5.539 29 C 0.056 3.944 30 C -0.220 4.220 31 C -0.182 4.182 32 H 0.245 0.755 33 H 0.031 0.969 34 H -0.005 1.005 35 H 0.084 0.916 36 H 0.045 0.955 37 H 0.049 0.951 38 H 0.044 0.956 39 H 0.069 0.931 40 H 0.096 0.904 41 H 0.068 0.932 42 H 0.094 0.906 43 H 0.272 0.728 44 H 0.190 0.810 45 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.401 -11.908 -7.462 14.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.251 4.251 3 Si 0.797 3.203 4 H -0.195 1.195 5 H -0.219 1.219 6 H -0.227 1.227 7 C -0.357 4.357 8 H 0.096 0.904 9 N -0.335 5.335 10 C 0.072 3.928 11 C -0.162 4.162 12 C 0.015 3.985 13 H 0.167 0.833 14 C 0.045 3.955 15 H 0.068 0.932 16 C -0.165 4.165 17 C -0.155 4.155 18 C -0.013 4.013 19 N -0.290 5.290 20 C 0.339 3.661 21 O -0.424 6.424 22 C 0.059 3.941 23 N -0.239 5.239 24 C 0.091 3.909 25 N -0.100 5.100 26 H 0.293 0.707 27 C 0.000 4.000 28 N -0.260 5.260 29 C -0.086 4.086 30 C -0.244 4.244 31 C -0.195 4.195 32 H 0.054 0.946 33 H 0.049 0.951 34 H 0.013 0.987 35 H 0.103 0.897 36 H 0.063 0.937 37 H 0.068 0.932 38 H 0.063 0.937 39 H 0.088 0.912 40 H 0.115 0.885 41 H 0.086 0.914 42 H 0.113 0.887 43 H 0.287 0.713 44 H 0.207 0.793 45 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -1.549 -11.850 -7.613 14.170 hybrid contribution 0.245 0.821 0.414 0.951 sum -1.305 -11.029 -7.199 13.235 Atomic orbital electron populations 1.70158 1.05888 1.24845 1.58584 1.25429 0.96432 1.00199 1.03047 0.85168 0.78206 0.80413 0.76476 1.19480 1.21866 1.22727 1.19347 0.90764 0.83403 1.42191 0.90392 1.44692 1.02151 1.00119 1.86511 1.20710 0.83623 0.90585 0.97898 1.22701 0.97815 0.95745 0.99969 1.22141 0.94604 0.78360 1.03395 0.83341 1.21168 0.94591 0.85054 0.94646 0.93185 1.21969 1.00323 0.95806 0.98394 1.21812 0.96784 0.93707 1.03213 1.21622 0.96285 1.00011 0.83397 1.47143 1.58741 1.06425 1.16675 1.18254 0.79047 0.85208 0.83560 1.90721 1.56749 1.18894 1.75995 1.21102 0.91360 0.88686 0.92964 1.68404 1.20277 1.16297 1.18940 1.26208 0.85560 0.97843 0.81271 1.41951 1.45971 1.02577 1.19486 0.70748 1.20673 1.00341 0.86609 0.92415 1.69544 1.26944 0.96225 1.33320 1.23020 0.96759 0.97581 0.91252 1.21582 1.09763 0.92611 1.00449 1.20983 1.07094 0.96340 0.95059 0.94580 0.95108 0.98707 0.89724 0.93654 0.93180 0.93674 0.91214 0.88509 0.91362 0.88748 0.71254 0.79346 0.83975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -52.73 10.29 21.65 0.22 -52.51 16 2 C -0.06 -3.06 5.49 84.86 0.47 -2.60 16 3 Si 0.97 43.28 29.55 68.60 2.03 45.31 16 4 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 5 H -0.29 -12.96 7.11 99.48 0.71 -12.26 16 6 H -0.30 -13.71 7.11 99.48 0.71 -13.01 16 7 C -0.23 -11.76 10.27 84.03 0.86 -10.90 16 8 H 0.08 3.92 7.83 -2.91 -0.02 3.89 16 9 N -0.61 -28.27 2.94 -671.94 -1.97 -30.24 16 10 C 0.20 8.82 5.39 86.66 0.47 9.29 16 11 C -0.12 -4.24 6.17 31.31 0.19 -4.04 16 12 C 0.12 3.84 2.25 45.86 0.10 3.94 16 13 H 0.15 4.61 4.46 -54.85 -0.24 4.37 16 14 C 0.15 5.69 3.29 44.83 0.15 5.84 16 15 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 16 C -0.12 -4.22 5.31 30.55 0.16 -4.06 16 17 C -0.12 -3.00 6.12 30.70 0.19 -2.81 16 18 C 0.11 2.92 6.28 86.64 0.54 3.46 16 19 N -0.56 -16.89 2.80 -804.15 -2.25 -19.14 16 20 C 0.55 17.46 7.60 87.02 0.66 18.13 16 21 O -0.55 -19.20 14.68 -3.57 -0.05 -19.25 16 22 C 0.19 5.47 6.61 41.98 0.28 5.75 16 23 N -0.52 -11.87 4.55 -187.68 -0.85 -12.72 16 24 C 0.37 4.99 12.24 180.49 2.21 7.20 16 25 N -0.50 -6.56 5.32 -191.95 -1.02 -7.58 16 26 H 0.45 2.25 8.93 -92.70 -0.83 1.43 16 27 C 0.25 6.07 8.71 136.28 1.19 7.25 16 28 N -0.54 -14.38 11.16 -188.44 -2.10 -16.49 16 29 C 0.06 1.45 11.70 83.93 0.98 2.43 16 30 C -0.22 -6.34 10.26 22.36 0.23 -6.11 16 31 C -0.18 -5.21 6.19 -19.88 -0.12 -5.34 16 32 H 0.24 13.40 8.31 -92.71 -0.77 12.63 16 33 H 0.03 1.49 7.25 -2.38 -0.02 1.48 16 34 H -0.01 -0.28 7.60 -2.39 -0.02 -0.30 16 35 H 0.08 2.59 6.96 -2.39 -0.02 2.57 16 36 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 38 H 0.04 1.67 8.02 -2.39 -0.02 1.65 16 39 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 40 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 41 H 0.07 1.80 8.14 -2.38 -0.02 1.78 16 42 H 0.09 2.49 6.95 -2.39 -0.02 2.47 16 43 H 0.27 0.96 8.06 -2.91 -0.02 0.93 16 44 H 0.19 3.57 8.06 -2.91 -0.02 3.55 16 45 H 0.14 4.19 7.40 -2.91 -0.02 4.16 16 Total: -1.00 -74.20 355.16 2.54 -71.66 By element: Atomic # 1 Polarization: 13.54 SS G_CDS: -0.02 Total: 13.53 kcal Atomic # 6 Polarization: 18.88 SS G_CDS: 8.56 Total: 27.44 kcal Atomic # 7 Polarization: -130.71 SS G_CDS: -7.98 Total: -138.68 kcal Atomic # 8 Polarization: -19.20 SS G_CDS: -0.05 Total: -19.25 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.31 kcal Total: -74.20 2.54 -71.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049573637.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 179.061 kcal (2) G-P(sol) polarization free energy of solvation -74.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.661 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds