Wall clock time and date at job start Sat Apr 11 2020 06:19:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86796 * 120.00629 * 2 1 4 4 H 1.48499 * 109.47141 * 270.00267 * 3 2 1 5 5 H 1.48505 * 109.46801 * 30.00521 * 3 2 1 6 6 H 1.48499 * 109.47156 * 149.99713 * 3 2 1 7 7 C 1.38823 * 119.99644 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00088 * 180.02562 * 7 2 1 9 9 N 1.36937 * 119.99531 * 359.97438 * 7 2 1 10 10 C 1.49382 * 126.97217 * 359.64651 * 9 7 2 11 11 C 1.54569 * 107.53414 * 182.92740 * 10 9 7 12 12 C 1.54417 * 102.44802 * 21.64759 * 11 10 9 13 13 H 1.08994 * 110.72558 * 80.55514 * 12 11 10 14 14 C 1.48217 * 125.76214 * 180.02562 * 9 7 2 15 15 H 1.09002 * 111.53169 * 32.93411 * 14 9 7 16 16 C 1.53016 * 107.11477 * 270.81342 * 14 9 7 17 17 C 1.52728 * 110.76666 * 191.95463 * 16 14 9 18 18 C 1.51353 * 109.55598 * 62.88456 * 17 16 14 19 19 N 1.45120 * 111.60764 * 203.41934 * 12 11 10 20 20 C 1.34778 * 119.57576 * 248.61879 * 19 12 11 21 21 O 1.21586 * 119.99888 * 175.96849 * 20 19 12 22 22 C 1.47583 * 119.99997 * 355.96196 * 20 19 12 23 23 C 1.41512 * 120.56395 * 50.87246 * 22 20 19 24 24 N 1.30900 * 120.16770 * 179.97438 * 23 22 20 25 25 C 1.34262 * 121.27052 * 0.02562 * 24 23 22 26 26 N 1.32428 * 131.63050 * 180.02562 * 25 24 23 27 27 C 1.33702 * 109.32276 * 179.97438 * 26 25 24 28 28 C 1.34906 * 108.65418 * 0.02562 * 27 26 25 29 29 N 1.37007 * 107.05660 * 0.02562 * 28 27 26 30 30 C 1.35969 * 132.54889 * 180.35721 * 29 28 27 31 31 H 0.97002 * 119.99629 * 359.97438 * 1 2 3 32 32 H 1.09001 * 109.77195 * 63.41210 * 10 9 7 33 33 H 1.09002 * 109.85031 * 302.48918 * 10 9 7 34 34 H 1.08996 * 110.81173 * 263.40184 * 11 10 9 35 35 H 1.09003 * 110.80880 * 139.88445 * 11 10 9 36 36 H 1.09000 * 109.21070 * 312.27831 * 16 14 9 37 37 H 1.09003 * 109.20798 * 71.63616 * 16 14 9 38 38 H 1.09000 * 109.64495 * 183.43748 * 17 16 14 39 39 H 1.09006 * 109.64328 * 304.06408 * 17 16 14 40 40 H 1.08998 * 110.12569 * 182.79428 * 18 17 16 41 41 H 1.08998 * 109.41896 * 61.99217 * 18 17 16 42 42 H 1.07999 * 119.91951 * 359.97036 * 23 22 20 43 43 H 1.08001 * 125.66844 * 179.97438 * 27 26 25 44 44 H 1.08004 * 126.46863 * 179.97438 * 28 27 26 45 45 H 1.08003 * 120.57885 * 359.88641 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4478 2.6526 0.7002 6 1 3.5478 1.4399 0.7001 7 6 2.0102 -1.2023 -0.0005 8 1 3.0901 -1.2024 -0.0001 9 7 1.3253 -2.3881 -0.0005 10 6 -0.1574 -2.5692 0.0074 11 6 -0.4408 -4.0870 0.0792 12 6 0.8757 -4.6441 0.6632 13 1 0.9023 -4.5162 1.7452 14 6 1.9336 -3.7397 -0.0005 15 1 2.8738 -3.7553 0.5507 16 6 2.1374 -4.1418 -1.4628 17 6 2.4824 -5.6255 -1.5734 18 6 1.3254 -6.4544 -1.0585 19 7 1.0606 -6.0431 0.3248 20 6 0.9889 -6.9770 1.2939 21 8 1.0694 -8.1563 1.0089 22 6 0.8129 -6.5683 2.7010 23 6 -0.2172 -5.6690 3.0657 24 7 -0.3666 -5.3121 4.3161 25 6 0.4442 -5.7832 5.2771 26 7 0.4799 -5.5655 6.5828 27 6 1.4806 -6.2699 7.1215 28 6 2.1027 -6.9555 6.1403 29 7 1.4577 -6.6558 4.9693 30 6 1.6488 -7.0592 3.6850 31 1 -0.4850 0.8401 0.0004 32 1 -0.5843 -2.1552 -0.9061 33 1 -0.5866 -2.0703 0.8763 34 1 -0.6264 -4.4938 -0.9148 35 1 -1.2781 -4.2935 0.7459 36 1 1.2218 -3.9439 -2.0201 37 1 2.9499 -3.5520 -1.8870 38 1 2.6832 -5.8784 -2.6144 39 1 3.3596 -5.8441 -0.9644 40 1 1.5809 -7.5136 -1.0872 41 1 0.4451 -6.2699 -1.6743 42 1 -0.8817 -5.2762 2.3103 43 1 1.7470 -6.2864 8.1680 44 1 2.9499 -7.6154 6.2560 45 1 2.4414 -7.7501 3.4383 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049596000.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:52 Heat of formation + Delta-G solvation = 121.720494 kcal Electronic energy + Delta-G solvation = -30614.523381 eV Core-core repulsion = 26635.181984 eV Total energy + Delta-G solvation = -3979.341397 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.23260 -40.81342 -38.55686 -37.89376 -35.13053 -34.79854 -33.28413 -32.18433 -31.20943 -29.50099 -29.16584 -28.35537 -25.61402 -25.03028 -24.32176 -23.70929 -22.17989 -21.97075 -20.88018 -20.20619 -18.97906 -18.71692 -17.73509 -17.09999 -16.92009 -16.38053 -16.27265 -15.69562 -15.12796 -14.83946 -14.68847 -14.38649 -14.14211 -14.01396 -13.84820 -13.53510 -13.43971 -13.02790 -12.76746 -12.66355 -12.16643 -12.10737 -11.90874 -11.50331 -11.14087 -11.06562 -10.89916 -10.86363 -10.72722 -10.60154 -10.43633 -10.19080 -10.08580 -9.98123 -9.75061 -9.68306 -9.30315 -8.75391 -8.55194 -8.40939 -6.96800 -5.80430 -3.13928 0.15045 0.63599 1.93941 2.30485 2.63494 2.88225 3.35957 3.37445 3.38122 3.41418 3.43422 3.94400 4.02509 4.28502 4.43351 4.51359 4.87262 4.93380 4.98423 5.03196 5.12112 5.14424 5.21378 5.33179 5.37719 5.42734 5.47644 5.53870 5.69635 5.79487 5.94611 5.98659 6.02163 6.08360 6.17832 6.18636 6.25238 6.30628 6.35018 6.56246 6.69038 6.90300 7.27348 7.29525 7.40617 7.42526 7.69547 7.72033 7.91456 8.09520 9.07478 9.69597 10.35712 11.32583 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010364 B = 0.004195 C = 0.003314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2700.953539 B = 6673.782367 C = 8446.750521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.003 4.003 3 Si 0.910 3.090 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.282 1.282 7 C -0.229 4.229 8 H 0.078 0.922 9 N -0.597 5.597 10 C 0.175 3.825 11 C -0.155 4.155 12 C 0.113 3.887 13 H 0.094 0.906 14 C 0.157 3.843 15 H 0.058 0.942 16 C -0.129 4.129 17 C -0.134 4.134 18 C 0.114 3.886 19 N -0.578 5.578 20 C 0.574 3.426 21 O -0.537 6.537 22 C -0.211 4.211 23 C 0.201 3.799 24 N -0.429 5.429 25 C 0.387 3.613 26 N -0.470 5.470 27 C 0.050 3.950 28 C -0.096 4.096 29 N -0.400 5.400 30 C 0.168 3.832 31 H 0.254 0.746 32 H 0.047 0.953 33 H 0.055 0.945 34 H 0.069 0.931 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.062 0.938 38 H 0.072 0.928 39 H 0.061 0.939 40 H 0.093 0.907 41 H 0.071 0.929 42 H 0.190 0.810 43 H 0.190 0.810 44 H 0.189 0.811 45 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.893 -16.470 4.037 17.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.200 4.200 3 Si 0.741 3.259 4 H -0.216 1.216 5 H -0.216 1.216 6 H -0.207 1.207 7 C -0.357 4.357 8 H 0.096 0.904 9 N -0.322 5.322 10 C 0.051 3.949 11 C -0.194 4.194 12 C 0.008 3.992 13 H 0.112 0.888 14 C 0.048 3.952 15 H 0.076 0.924 16 C -0.170 4.170 17 C -0.173 4.173 18 C -0.007 4.007 19 N -0.308 5.308 20 C 0.360 3.640 21 O -0.415 6.415 22 C -0.220 4.220 23 C 0.012 3.988 24 N -0.139 5.139 25 C 0.039 3.961 26 N -0.192 5.192 27 C -0.101 4.101 28 C -0.226 4.226 29 N -0.078 5.078 30 C 0.033 3.967 31 H 0.064 0.936 32 H 0.065 0.935 33 H 0.074 0.926 34 H 0.088 0.912 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.081 0.919 38 H 0.091 0.909 39 H 0.079 0.921 40 H 0.111 0.889 41 H 0.089 0.911 42 H 0.206 0.794 43 H 0.207 0.793 44 H 0.206 0.794 45 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 2.765 -15.698 4.867 16.666 hybrid contribution 1.676 0.003 -0.694 1.814 sum 4.441 -15.695 4.173 16.836 Atomic orbital electron populations 1.69896 1.04870 1.25308 1.56486 1.24767 0.95684 0.97563 1.01968 0.86151 0.78640 0.83576 0.77561 1.21575 1.21599 1.20738 1.18973 0.90266 0.81974 1.44446 0.90382 1.45177 1.01063 0.98971 1.87004 1.21571 0.84308 0.87313 1.01715 1.23217 0.95389 1.00167 1.00631 1.22202 0.98123 0.78707 1.00146 0.88830 1.21289 0.94183 0.86336 0.93436 0.92424 1.22124 1.02231 0.93084 0.99524 1.21574 0.97840 0.96928 1.00963 1.21368 0.98757 1.00069 0.80516 1.47573 1.68429 1.06832 1.07953 1.17528 0.77187 0.85541 0.83741 1.90802 1.51026 1.16757 1.82922 1.20662 1.01369 1.04530 0.95424 1.23661 0.93657 0.89282 0.92183 1.67881 1.23390 1.23025 0.99652 1.22204 0.88332 0.92681 0.92891 1.70749 1.21934 1.24898 1.01588 1.22679 0.92559 0.94756 1.00110 1.22723 1.05472 1.11275 0.83169 1.43990 1.24982 1.31943 1.06848 1.22319 0.98341 0.95311 0.80684 0.93579 0.93514 0.92626 0.91200 0.91634 0.91613 0.91893 0.90931 0.92067 0.88880 0.91072 0.79390 0.79268 0.79355 0.79930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.74 10.52 55.49 0.58 -25.15 16 2 C 0.00 -0.08 5.49 -17.43 -0.10 -0.17 16 3 Si 0.91 21.44 29.55 -169.99 -5.02 16.42 16 4 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.23 -5.95 10.31 -15.06 -0.16 -6.10 16 8 H 0.08 1.98 7.83 -52.49 -0.41 1.57 16 9 N -0.60 -13.67 2.99 -160.34 -0.48 -14.15 16 10 C 0.18 3.78 5.29 -1.62 -0.01 3.78 16 11 C -0.15 -2.45 5.87 -25.16 -0.15 -2.60 16 12 C 0.11 1.72 2.25 -67.30 -0.15 1.57 16 13 H 0.09 1.48 4.70 -51.93 -0.24 1.24 16 14 C 0.16 2.81 3.54 -66.35 -0.23 2.58 16 15 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 16 C -0.13 -2.04 5.13 -26.86 -0.14 -2.18 16 17 C -0.13 -1.62 5.95 -27.70 -0.16 -1.79 16 18 C 0.11 1.36 6.08 -4.75 -0.03 1.33 16 19 N -0.58 -7.62 2.73 -167.56 -0.46 -8.07 16 20 C 0.57 7.66 7.22 -12.45 -0.09 7.57 16 21 O -0.54 -8.16 16.39 5.29 0.09 -8.08 16 22 C -0.21 -2.66 4.89 -104.88 -0.51 -3.18 16 23 C 0.20 2.75 8.65 -16.70 -0.14 2.60 16 24 N -0.43 -6.94 10.45 -13.38 -0.14 -7.08 16 25 C 0.39 6.11 8.91 -322.26 -2.87 3.23 16 26 N -0.47 -7.37 11.31 -14.42 -0.16 -7.54 16 27 C 0.05 0.55 11.82 -17.92 -0.21 0.34 16 28 C -0.10 -0.93 11.76 -16.42 -0.19 -1.12 16 29 N -0.40 -4.97 2.94 -63.77 -0.19 -5.16 16 30 C 0.17 1.87 10.81 -15.76 -0.17 1.70 16 31 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 32 H 0.05 1.13 7.68 -51.93 -0.40 0.73 16 33 H 0.06 1.36 7.39 -51.93 -0.38 0.98 16 34 H 0.07 1.04 6.83 -51.93 -0.35 0.68 16 35 H 0.07 0.91 6.58 -51.93 -0.34 0.56 16 36 H 0.07 1.11 7.15 -51.93 -0.37 0.74 16 37 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.09 1.08 6.97 -51.93 -0.36 0.72 16 41 H 0.07 0.80 7.53 -51.93 -0.39 0.41 16 42 H 0.19 2.32 5.41 -52.49 -0.28 2.04 16 43 H 0.19 1.30 8.06 -52.49 -0.42 0.87 16 44 H 0.19 1.00 8.06 -52.48 -0.42 0.57 16 45 H 0.18 1.45 8.06 -52.48 -0.42 1.02 16 LS Contribution 355.30 15.07 5.35 5.35 Total: -1.00 -32.83 355.30 -11.38 -44.21 By element: Atomic # 1 Polarization: 7.32 SS G_CDS: -5.64 Total: 1.69 kcal Atomic # 6 Polarization: 12.87 SS G_CDS: -5.32 Total: 7.55 kcal Atomic # 7 Polarization: -66.30 SS G_CDS: -0.84 Total: -67.15 kcal Atomic # 8 Polarization: -8.16 SS G_CDS: 0.09 Total: -8.08 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -32.83 -11.38 -44.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049596000.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.933 kcal (2) G-P(sol) polarization free energy of solvation -32.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.213 kcal (6) G-S(sol) free energy of system = (1) + (5) 121.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds