Wall clock time and date at job start Sat Apr 11 2020 06:20:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86800 * 120.00260 * 2 1 4 4 H 1.48500 * 109.47045 * 269.99621 * 3 2 1 5 5 H 1.48495 * 109.47026 * 30.00278 * 3 2 1 6 6 H 1.48500 * 109.47007 * 150.00220 * 3 2 1 7 7 C 1.38812 * 119.99884 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00510 * 180.02562 * 7 2 1 9 9 N 1.36941 * 120.00093 * 359.97438 * 7 2 1 10 10 C 1.46891 * 125.57928 * 359.97438 * 9 7 2 11 11 C 1.54056 * 107.70798 * 177.04376 * 10 9 7 12 12 C 1.54062 * 103.74421 * 342.86939 * 11 10 9 13 13 H 1.08993 * 109.16391 * 274.18610 * 12 11 10 14 14 C 1.47774 * 125.62476 * 179.97438 * 9 7 2 15 15 H 1.08996 * 111.35460 * 322.07720 * 14 9 7 16 16 C 1.52930 * 107.92925 * 83.52949 * 14 9 7 17 17 C 1.52937 * 109.74486 * 171.88256 * 16 14 9 18 18 C 1.53061 * 108.48481 * 294.03520 * 17 16 14 19 19 N 1.44189 * 111.76518 * 153.24921 * 12 11 10 20 20 C 1.34782 * 117.75935 * 93.53329 * 19 12 11 21 21 O 1.21547 * 119.99923 * 174.03006 * 20 19 12 22 22 C 1.47883 * 119.99596 * 354.02804 * 20 19 12 23 23 C 1.39905 * 125.68813 * 173.46717 * 22 20 19 24 24 C 1.38585 * 107.58949 * 179.97438 * 23 22 20 25 25 N 1.34108 * 132.34225 * 180.02562 * 24 23 22 26 26 C 1.31129 * 120.84303 * 180.02562 * 25 24 23 27 27 C 1.40353 * 120.29865 * 359.92727 * 26 25 24 28 28 C 1.35450 * 119.45691 * 0.03898 * 27 26 25 29 29 N 1.36671 * 119.14774 * 359.97438 * 28 27 26 30 30 N 1.32370 * 125.69552 * 353.16802 * 22 20 19 31 31 H 0.97001 * 119.99682 * 0.02562 * 1 2 3 32 32 H 1.09001 * 109.80898 * 57.48724 * 10 9 7 33 33 H 1.09005 * 109.85925 * 296.62137 * 10 9 7 34 34 H 1.08995 * 110.56888 * 224.30584 * 11 10 9 35 35 H 1.08996 * 110.56812 * 101.43583 * 11 10 9 36 36 H 1.09001 * 109.41335 * 51.81220 * 16 14 9 37 37 H 1.09007 * 109.41447 * 291.95006 * 16 14 9 38 38 H 1.08994 * 109.63373 * 53.73071 * 17 16 14 39 39 H 1.08994 * 109.63762 * 174.13597 * 17 16 14 40 40 H 1.09009 * 109.45385 * 173.83902 * 18 17 16 41 41 H 1.09001 * 109.45625 * 293.79946 * 18 17 16 42 42 H 1.07996 * 126.20751 * 359.96509 * 23 22 20 43 43 H 1.08000 * 119.85491 * 179.97438 * 26 25 24 44 44 H 1.07997 * 120.27104 * 180.02562 * 27 26 25 45 45 H 1.08004 * 120.42734 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4478 2.6526 0.7001 6 1 3.5478 1.4400 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2023 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1364 -2.5309 0.0005 11 6 -0.4604 -4.0351 -0.0756 12 6 0.8582 -4.6696 -0.5575 13 1 0.8951 -4.6347 -1.6463 14 6 1.9354 -3.7341 -0.0016 15 1 2.8281 -3.7649 -0.6262 16 6 2.2802 -4.0959 1.4437 17 6 2.7269 -5.5567 1.5182 18 6 1.5337 -6.4477 1.1644 19 7 0.9835 -6.0383 -0.1218 20 6 0.5631 -7.0054 -0.9613 21 8 0.7483 -8.1741 -0.6834 22 6 -0.1234 -6.6443 -2.2204 23 6 -0.4924 -7.5359 -3.2334 24 6 -1.1082 -6.8011 -4.2342 25 7 -1.6446 -7.1515 -5.4123 26 6 -2.1795 -6.2514 -6.2017 27 6 -2.2003 -4.9001 -5.8231 28 6 -1.6625 -4.5328 -4.6354 29 7 -1.1107 -5.4894 -3.8302 30 7 -0.4962 -5.4246 -2.5745 31 1 -0.4850 0.8401 -0.0004 32 1 -0.5583 -2.0178 -0.8637 33 1 -0.5489 -2.1101 0.9176 34 1 -1.2590 -4.2190 -0.7942 35 1 -0.7329 -4.4184 0.9077 36 1 1.4013 -3.9532 2.0724 37 1 3.0861 -3.4521 1.7960 38 1 3.5357 -5.7289 0.8082 39 1 3.0707 -5.7836 2.5273 40 1 1.8607 -7.4859 1.1056 41 1 0.7678 -6.3514 1.9341 42 1 -0.3273 -8.6032 -3.2353 43 1 -2.6067 -6.5513 -7.1472 44 1 -2.6413 -4.1592 -6.4734 45 1 -1.6696 -3.4972 -4.3286 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049809392.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:19 Heat of formation + Delta-G solvation = 139.215446 kcal Electronic energy + Delta-G solvation = -30638.975469 eV Core-core repulsion = 26660.392710 eV Total energy + Delta-G solvation = -3978.582759 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.46467 -40.45299 -38.30253 -37.76510 -35.09217 -34.18483 -33.18763 -32.11491 -31.15962 -29.28829 -28.96533 -28.39740 -25.87107 -24.70095 -24.32005 -23.62843 -22.49789 -21.65627 -20.37110 -19.94633 -18.66406 -18.15717 -17.71189 -16.94049 -16.65405 -16.22032 -15.93771 -15.32507 -14.99104 -14.82355 -14.66009 -14.45301 -13.92642 -13.77325 -13.53765 -13.39808 -13.16871 -13.00759 -12.64553 -12.54541 -12.07901 -11.94672 -11.63780 -11.39511 -11.11308 -11.04595 -10.89051 -10.77623 -10.66585 -10.48219 -10.21484 -10.13194 -10.03573 -9.89850 -9.77576 -9.65375 -9.33312 -8.62925 -8.38207 -8.04788 -6.89103 -5.74940 -3.09149 0.31242 0.59151 1.76638 1.81897 3.03444 3.16205 3.36109 3.36763 3.42000 3.43387 3.68116 3.89143 4.23001 4.42965 4.56076 4.70022 4.99302 5.13032 5.16581 5.24323 5.30102 5.33517 5.40417 5.50010 5.52100 5.60089 5.62830 5.77680 5.86486 5.92008 6.09910 6.13701 6.15745 6.20238 6.32469 6.33440 6.38011 6.54601 6.63173 6.80424 6.89099 7.03924 7.13275 7.39411 7.51569 7.54513 7.62570 7.80024 8.15750 8.22330 9.17882 9.77319 10.42876 11.35813 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010438 B = 0.004342 C = 0.003214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2681.953946 B = 6447.159969 C = 8708.926022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.006 4.006 3 Si 0.910 3.090 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.225 4.225 8 H 0.078 0.922 9 N -0.594 5.594 10 C 0.184 3.816 11 C -0.146 4.146 12 C 0.121 3.879 13 H 0.109 0.891 14 C 0.162 3.838 15 H 0.053 0.947 16 C -0.132 4.132 17 C -0.131 4.131 18 C 0.114 3.886 19 N -0.569 5.569 20 C 0.590 3.410 21 O -0.531 6.531 22 C 0.070 3.930 23 C -0.203 4.203 24 C 0.246 3.754 25 N -0.462 5.462 26 C 0.178 3.822 27 C -0.228 4.228 28 C 0.170 3.830 29 N -0.309 5.309 30 N -0.249 5.249 31 H 0.252 0.748 32 H 0.051 0.949 33 H 0.038 0.962 34 H 0.068 0.932 35 H 0.052 0.948 36 H 0.062 0.938 37 H 0.063 0.937 38 H 0.064 0.936 39 H 0.072 0.928 40 H 0.091 0.909 41 H 0.065 0.935 42 H 0.170 0.830 43 H 0.180 0.820 44 H 0.168 0.832 45 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.080 -11.256 -9.031 14.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.202 4.202 3 Si 0.741 3.259 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.353 4.353 8 H 0.095 0.905 9 N -0.319 5.319 10 C 0.059 3.941 11 C -0.186 4.186 12 C 0.016 3.984 13 H 0.126 0.874 14 C 0.053 3.947 15 H 0.071 0.929 16 C -0.172 4.172 17 C -0.170 4.170 18 C -0.008 4.008 19 N -0.299 5.299 20 C 0.375 3.625 21 O -0.406 6.406 22 C -0.089 4.089 23 C -0.234 4.234 24 C 0.020 3.980 25 N -0.172 5.172 26 C -0.007 4.007 27 C -0.252 4.252 28 C 0.036 3.964 29 N -0.081 5.081 30 N -0.078 5.078 31 H 0.062 0.938 32 H 0.069 0.931 33 H 0.056 0.944 34 H 0.087 0.913 35 H 0.071 0.929 36 H 0.081 0.919 37 H 0.082 0.918 38 H 0.083 0.917 39 H 0.091 0.909 40 H 0.109 0.891 41 H 0.083 0.917 42 H 0.188 0.812 43 H 0.197 0.803 44 H 0.186 0.814 45 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -3.850 -11.356 -8.402 14.642 hybrid contribution 0.264 1.256 -0.088 1.286 sum -3.586 -10.100 -8.490 13.673 Atomic orbital electron populations 1.69976 1.04842 1.24952 1.57057 1.24770 0.95678 0.97530 1.02230 0.86143 0.78646 0.83582 0.77533 1.21670 1.21701 1.20696 1.19025 0.90429 0.82157 1.43734 0.90463 1.44513 1.01528 0.99118 1.86711 1.21011 0.84120 0.87991 1.01010 1.22990 0.96551 0.99208 0.99806 1.21680 0.97257 0.78989 1.00442 0.87358 1.20895 0.93816 0.86155 0.93828 0.92900 1.22139 1.01549 0.93604 0.99899 1.21849 0.97054 0.96540 1.01538 1.21438 0.96052 0.99806 0.83509 1.47045 1.59445 1.06708 1.16709 1.17116 0.78652 0.85364 0.81417 1.90766 1.56895 1.18066 1.74890 1.22115 0.99160 0.91190 0.96423 1.20881 1.09442 1.00941 0.92184 1.20548 1.00611 0.83150 0.93675 1.68226 1.11361 1.35969 1.01694 1.23413 0.90704 0.88741 0.97856 1.21856 1.06685 0.99189 0.97444 1.22250 0.90021 0.95469 0.88657 1.47514 1.37912 1.07719 1.14991 1.78752 1.17749 1.18901 0.92394 0.93807 0.93122 0.94357 0.91338 0.92884 0.91906 0.91801 0.91721 0.90911 0.89097 0.91711 0.81247 0.80341 0.81418 0.79809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.12 10.29 55.49 0.57 -25.55 16 2 C -0.01 -0.16 5.49 -17.43 -0.10 -0.25 16 3 Si 0.91 21.53 29.55 -169.99 -5.02 16.50 16 4 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 7 C -0.23 -6.02 10.28 -15.06 -0.15 -6.18 16 8 H 0.08 2.01 7.83 -52.48 -0.41 1.60 16 9 N -0.59 -14.49 2.94 -163.71 -0.48 -14.97 16 10 C 0.18 4.34 5.39 -3.28 -0.02 4.33 16 11 C -0.15 -2.83 6.17 -25.63 -0.16 -2.98 16 12 C 0.12 2.23 2.23 -68.55 -0.15 2.08 16 13 H 0.11 2.10 5.04 -51.93 -0.26 1.84 16 14 C 0.16 3.26 3.29 -67.21 -0.22 3.04 16 15 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 16 C -0.13 -2.35 5.31 -26.80 -0.14 -2.49 16 17 C -0.13 -1.86 6.10 -26.73 -0.16 -2.02 16 18 C 0.11 1.67 6.29 -4.41 -0.03 1.65 16 19 N -0.57 -9.54 2.80 -168.71 -0.47 -10.01 16 20 C 0.59 10.20 7.59 -12.31 -0.09 10.11 16 21 O -0.53 -9.83 16.10 5.32 0.09 -9.74 16 22 C 0.07 1.16 6.61 -83.06 -0.55 0.62 16 23 C -0.20 -3.09 10.66 -38.83 -0.41 -3.51 16 24 C 0.25 3.50 7.90 -155.42 -1.23 2.28 16 25 N -0.46 -5.54 10.48 -12.22 -0.13 -5.67 16 26 C 0.18 1.38 11.27 -17.06 -0.19 1.19 16 27 C -0.23 -1.56 10.05 -39.78 -0.40 -1.96 16 28 C 0.17 1.73 11.30 -16.39 -0.19 1.54 16 29 N -0.31 -4.36 3.90 -12.20 -0.05 -4.41 16 30 N -0.25 -4.11 7.49 33.23 0.25 -3.86 16 31 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 32 H 0.05 1.32 7.25 -51.93 -0.38 0.94 16 33 H 0.04 1.01 7.60 -51.93 -0.39 0.61 16 34 H 0.07 1.29 6.66 -51.93 -0.35 0.94 16 35 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.06 1.20 8.02 -51.93 -0.42 0.78 16 37 H 0.06 1.18 8.14 -51.92 -0.42 0.76 16 38 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 40 H 0.09 1.30 6.90 -51.92 -0.36 0.94 16 41 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 42 H 0.17 2.37 8.06 -52.49 -0.42 1.94 16 43 H 0.18 0.62 8.06 -52.49 -0.42 0.20 16 44 H 0.17 0.50 8.06 -52.49 -0.42 0.08 16 45 H 0.18 1.57 8.06 -52.48 -0.42 1.15 16 LS Contribution 359.49 15.07 5.42 5.42 Total: -1.00 -32.92 359.49 -9.95 -42.87 By element: Atomic # 1 Polarization: 7.92 SS G_CDS: -5.93 Total: 1.99 kcal Atomic # 6 Polarization: 11.62 SS G_CDS: -4.19 Total: 7.42 kcal Atomic # 7 Polarization: -64.16 SS G_CDS: -0.31 Total: -64.47 kcal Atomic # 8 Polarization: -9.83 SS G_CDS: 0.09 Total: -9.74 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -32.92 -9.95 -42.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049809392.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 182.085 kcal (2) G-P(sol) polarization free energy of solvation -32.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 149.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.870 kcal (6) G-S(sol) free energy of system = (1) + (5) 139.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds