Wall clock time and date at job start Sat Apr 11 2020 06:20:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86800 * 120.00260 * 2 1 4 4 H 1.48500 * 109.47045 * 269.99621 * 3 2 1 5 5 H 1.48495 * 109.47026 * 30.00278 * 3 2 1 6 6 H 1.48500 * 109.47007 * 150.00220 * 3 2 1 7 7 C 1.38812 * 119.99884 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00510 * 180.02562 * 7 2 1 9 9 N 1.36941 * 120.00093 * 359.97438 * 7 2 1 10 10 C 1.46891 * 125.57928 * 359.97438 * 9 7 2 11 11 C 1.54056 * 107.70798 * 177.04376 * 10 9 7 12 12 C 1.54062 * 103.74421 * 342.86939 * 11 10 9 13 13 H 1.08993 * 109.16391 * 274.18610 * 12 11 10 14 14 C 1.47774 * 125.62476 * 179.97438 * 9 7 2 15 15 H 1.08996 * 111.35460 * 322.07720 * 14 9 7 16 16 C 1.52930 * 107.92925 * 83.52949 * 14 9 7 17 17 C 1.52937 * 109.74486 * 171.88256 * 16 14 9 18 18 C 1.53061 * 108.48481 * 294.03520 * 17 16 14 19 19 N 1.44189 * 111.76518 * 153.24921 * 12 11 10 20 20 C 1.34782 * 117.75935 * 93.53329 * 19 12 11 21 21 O 1.21547 * 119.99923 * 174.03006 * 20 19 12 22 22 C 1.47883 * 119.99596 * 354.02804 * 20 19 12 23 23 C 1.39905 * 125.68813 * 173.46717 * 22 20 19 24 24 C 1.38585 * 107.58949 * 179.97438 * 23 22 20 25 25 N 1.34108 * 132.34225 * 180.02562 * 24 23 22 26 26 C 1.31129 * 120.84303 * 180.02562 * 25 24 23 27 27 C 1.40353 * 120.29865 * 359.92727 * 26 25 24 28 28 C 1.35450 * 119.45691 * 0.03898 * 27 26 25 29 29 N 1.36671 * 119.14774 * 359.97438 * 28 27 26 30 30 N 1.32370 * 125.69552 * 353.16802 * 22 20 19 31 31 H 0.97001 * 119.99682 * 0.02562 * 1 2 3 32 32 H 1.09001 * 109.80898 * 57.48724 * 10 9 7 33 33 H 1.09005 * 109.85925 * 296.62137 * 10 9 7 34 34 H 1.08995 * 110.56888 * 224.30584 * 11 10 9 35 35 H 1.08996 * 110.56812 * 101.43583 * 11 10 9 36 36 H 1.09001 * 109.41335 * 51.81220 * 16 14 9 37 37 H 1.09007 * 109.41447 * 291.95006 * 16 14 9 38 38 H 1.08994 * 109.63373 * 53.73071 * 17 16 14 39 39 H 1.08994 * 109.63762 * 174.13597 * 17 16 14 40 40 H 1.09009 * 109.45385 * 173.83902 * 18 17 16 41 41 H 1.09001 * 109.45625 * 293.79946 * 18 17 16 42 42 H 1.07996 * 126.20751 * 359.96509 * 23 22 20 43 43 H 1.08000 * 119.85491 * 179.97438 * 26 25 24 44 44 H 1.07997 * 120.27104 * 180.02562 * 27 26 25 45 45 H 1.08004 * 120.42734 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4478 2.6526 0.7001 6 1 3.5478 1.4400 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2023 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1364 -2.5309 0.0005 11 6 -0.4604 -4.0351 -0.0756 12 6 0.8582 -4.6696 -0.5575 13 1 0.8951 -4.6347 -1.6463 14 6 1.9354 -3.7341 -0.0016 15 1 2.8281 -3.7649 -0.6262 16 6 2.2802 -4.0959 1.4437 17 6 2.7269 -5.5567 1.5182 18 6 1.5337 -6.4477 1.1644 19 7 0.9835 -6.0383 -0.1218 20 6 0.5631 -7.0054 -0.9613 21 8 0.7483 -8.1741 -0.6834 22 6 -0.1234 -6.6443 -2.2204 23 6 -0.4924 -7.5359 -3.2334 24 6 -1.1082 -6.8011 -4.2342 25 7 -1.6446 -7.1515 -5.4123 26 6 -2.1795 -6.2514 -6.2017 27 6 -2.2003 -4.9001 -5.8231 28 6 -1.6625 -4.5328 -4.6354 29 7 -1.1107 -5.4894 -3.8302 30 7 -0.4962 -5.4246 -2.5745 31 1 -0.4850 0.8401 -0.0004 32 1 -0.5583 -2.0178 -0.8637 33 1 -0.5489 -2.1101 0.9176 34 1 -1.2590 -4.2190 -0.7942 35 1 -0.7329 -4.4184 0.9077 36 1 1.4013 -3.9532 2.0724 37 1 3.0861 -3.4521 1.7960 38 1 3.5357 -5.7289 0.8082 39 1 3.0707 -5.7836 2.5273 40 1 1.8607 -7.4859 1.1056 41 1 0.7678 -6.3514 1.9341 42 1 -0.3273 -8.6032 -3.2353 43 1 -2.6067 -6.5513 -7.1472 44 1 -2.6413 -4.1592 -6.4734 45 1 -1.6696 -3.4972 -4.3286 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049809392.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:19 Heat of formation + Delta-G solvation = 119.545151 kcal Electronic energy + Delta-G solvation = -30639.828437 eV Core-core repulsion = 26660.392710 eV Total energy + Delta-G solvation = -3979.435727 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.45734 -41.80458 -39.69560 -38.84252 -36.70246 -35.09279 -34.50928 -34.01493 -32.14827 -30.82310 -30.24632 -29.97894 -27.05648 -26.43934 -25.55498 -24.70798 -23.67439 -23.01368 -22.01618 -21.43938 -19.81658 -19.18307 -19.12809 -18.62052 -17.52494 -17.26938 -17.21892 -16.77614 -16.42570 -16.27256 -16.18055 -15.54283 -15.35183 -15.12085 -14.90391 -14.57603 -14.38901 -14.16785 -13.91672 -13.79468 -13.71118 -13.43029 -13.20671 -12.81823 -12.70058 -12.37038 -12.35908 -12.31074 -12.22292 -12.03020 -11.92935 -11.64704 -11.51569 -11.47818 -11.17778 -10.84925 -10.67014 -10.52772 -9.76710 -9.07720 -8.89133 -7.82278 -5.18430 -0.52748 -0.30663 0.65944 0.87930 1.47314 1.48259 1.56842 1.77619 2.04127 2.41584 2.49500 2.76461 2.85776 3.35087 3.42519 3.57625 3.67157 3.77201 3.89886 3.98917 4.02820 4.12160 4.15041 4.21554 4.33181 4.38328 4.49796 4.58697 4.60617 4.63435 4.68606 4.81654 4.88537 5.00629 5.00952 5.07712 5.10981 5.14252 5.32100 5.36189 5.45284 5.53057 5.57605 5.66412 5.76462 6.01506 6.16904 6.23437 6.56825 6.84183 7.11479 7.77016 8.42036 9.27419 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010438 B = 0.004342 C = 0.003214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2681.953946 B = 6447.159969 C = 8708.926022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.060 4.060 3 Si 0.974 3.026 4 H -0.286 1.286 5 H -0.296 1.296 6 H -0.271 1.271 7 C -0.235 4.235 8 H 0.081 0.919 9 N -0.611 5.611 10 C 0.200 3.800 11 C -0.127 4.127 12 C 0.141 3.859 13 H 0.102 0.898 14 C 0.155 3.845 15 H 0.050 0.950 16 C -0.122 4.122 17 C -0.117 4.117 18 C 0.109 3.891 19 N -0.570 5.570 20 C 0.592 3.408 21 O -0.546 6.546 22 C 0.052 3.948 23 C -0.227 4.227 24 C 0.247 3.753 25 N -0.490 5.490 26 C 0.193 3.807 27 C -0.188 4.188 28 C 0.130 3.870 29 N -0.312 5.312 30 N -0.284 5.284 31 H 0.246 0.754 32 H 0.019 0.981 33 H 0.003 0.997 34 H 0.074 0.926 35 H 0.058 0.942 36 H 0.048 0.952 37 H 0.055 0.945 38 H 0.069 0.931 39 H 0.104 0.896 40 H 0.101 0.899 41 H 0.073 0.927 42 H 0.171 0.829 43 H 0.231 0.769 44 H 0.219 0.781 45 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.236 -11.761 -10.969 16.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.253 4.253 3 Si 0.803 3.197 4 H -0.213 1.213 5 H -0.222 1.222 6 H -0.196 1.196 7 C -0.364 4.364 8 H 0.099 0.901 9 N -0.336 5.336 10 C 0.074 3.926 11 C -0.167 4.167 12 C 0.036 3.964 13 H 0.120 0.880 14 C 0.048 3.952 15 H 0.068 0.932 16 C -0.162 4.162 17 C -0.156 4.156 18 C -0.011 4.011 19 N -0.299 5.299 20 C 0.377 3.623 21 O -0.423 6.423 22 C -0.106 4.106 23 C -0.259 4.259 24 C 0.019 3.981 25 N -0.202 5.202 26 C 0.009 3.991 27 C -0.211 4.211 28 C -0.002 4.002 29 N -0.084 5.084 30 N -0.114 5.114 31 H 0.056 0.944 32 H 0.037 0.963 33 H 0.022 0.978 34 H 0.092 0.908 35 H 0.077 0.923 36 H 0.067 0.933 37 H 0.074 0.926 38 H 0.088 0.912 39 H 0.122 0.878 40 H 0.119 0.881 41 H 0.091 0.909 42 H 0.189 0.811 43 H 0.247 0.753 44 H 0.236 0.764 45 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -3.985 -11.878 -10.340 16.245 hybrid contribution 0.177 1.435 0.240 1.466 sum -3.808 -10.443 -10.100 15.019 Atomic orbital electron populations 1.70184 1.06177 1.25142 1.58310 1.25546 0.96496 1.00614 1.02636 0.85138 0.77665 0.79458 0.77424 1.21307 1.22248 1.19581 1.19370 0.90886 0.83294 1.42832 0.90080 1.44717 1.01936 1.00254 1.86683 1.20655 0.83883 0.90262 0.97760 1.22753 0.97441 0.96172 1.00294 1.21287 0.95582 0.79564 1.00000 0.88045 1.21091 0.93960 0.84699 0.95463 0.93248 1.21950 1.00669 0.96178 0.97434 1.21783 0.96827 0.93368 1.03606 1.21628 0.96443 1.00364 0.82708 1.47033 1.59676 1.05751 1.17461 1.17233 0.78279 0.85100 0.81649 1.90739 1.57659 1.18492 1.75413 1.21982 1.00222 0.91787 0.96581 1.20944 1.11035 1.01110 0.92834 1.20684 1.00109 0.83024 0.94256 1.68358 1.13065 1.37347 1.01426 1.24444 0.87726 0.88552 0.98346 1.22528 1.02828 0.99941 0.95755 1.22888 0.91747 0.95706 0.89851 1.47625 1.37710 1.08590 1.14519 1.78549 1.19619 1.19044 0.94235 0.94443 0.96260 0.97848 0.90786 0.92350 0.93323 0.92615 0.91199 0.87779 0.88107 0.90916 0.81135 0.75254 0.76411 0.79028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.80 10.29 21.65 0.22 -55.58 16 2 C -0.06 -3.32 5.49 84.86 0.47 -2.86 16 3 Si 0.97 44.86 29.55 68.60 2.03 46.89 16 4 H -0.29 -12.92 7.11 99.48 0.71 -12.21 16 5 H -0.30 -13.77 7.11 99.48 0.71 -13.06 16 6 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 7 C -0.24 -12.85 10.28 84.03 0.86 -11.98 16 8 H 0.08 4.26 7.83 -2.91 -0.02 4.24 16 9 N -0.61 -30.78 2.94 -671.87 -1.97 -32.75 16 10 C 0.20 9.93 5.39 86.66 0.47 10.40 16 11 C -0.13 -5.09 6.17 31.31 0.19 -4.90 16 12 C 0.14 5.31 2.23 45.82 0.10 5.41 16 13 H 0.10 4.07 5.04 -2.39 -0.01 4.06 16 14 C 0.16 6.36 3.29 44.76 0.15 6.51 16 15 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 16 C -0.12 -4.33 5.31 30.55 0.16 -4.17 16 17 C -0.12 -3.13 6.10 30.59 0.19 -2.94 16 18 C 0.11 3.09 6.29 86.54 0.54 3.64 16 19 N -0.57 -19.10 2.80 -805.95 -2.26 -21.36 16 20 C 0.59 20.78 7.59 86.80 0.66 21.44 16 21 O -0.55 -20.36 16.10 -3.86 -0.06 -20.42 16 22 C 0.05 1.77 6.61 42.02 0.28 2.04 16 23 C -0.23 -7.13 10.66 22.76 0.24 -6.89 16 24 C 0.25 6.95 7.90 133.00 1.05 8.00 16 25 N -0.49 -10.73 10.48 -192.58 -2.02 -12.75 16 26 C 0.19 2.15 11.27 85.31 0.96 3.11 16 27 C -0.19 -1.77 10.05 22.14 0.22 -1.55 16 28 C 0.13 2.44 11.30 83.29 0.94 3.39 16 29 N -0.31 -8.77 3.90 -192.51 -0.75 -9.52 16 30 N -0.28 -9.67 7.49 -48.78 -0.37 -10.03 16 31 H 0.25 14.11 8.31 -92.71 -0.77 13.34 16 32 H 0.02 1.06 7.25 -2.39 -0.02 1.04 16 33 H 0.00 0.19 7.60 -2.38 -0.02 0.17 16 34 H 0.07 2.90 6.66 -2.39 -0.02 2.88 16 35 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 36 H 0.05 1.86 8.02 -2.39 -0.02 1.84 16 37 H 0.06 2.05 8.14 -2.38 -0.02 2.03 16 38 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 39 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16 40 H 0.10 2.72 6.90 -2.38 -0.02 2.70 16 41 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 42 H 0.17 5.00 8.06 -2.91 -0.02 4.98 16 43 H 0.23 0.13 8.06 -2.91 -0.02 0.11 16 44 H 0.22 -0.11 8.06 -2.91 -0.02 -0.14 16 45 H 0.19 3.14 8.06 -2.91 -0.02 3.12 16 Total: -1.00 -76.11 359.49 3.33 -72.78 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: 1.02 Total: 14.10 kcal Atomic # 6 Polarization: 21.17 SS G_CDS: 7.49 Total: 28.65 kcal Atomic # 7 Polarization: -134.86 SS G_CDS: -7.14 Total: -142.00 kcal Atomic # 8 Polarization: -20.36 SS G_CDS: -0.06 Total: -20.42 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.89 kcal Total: -76.11 3.33 -72.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049809392.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 192.326 kcal (2) G-P(sol) polarization free energy of solvation -76.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.781 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds