Wall clock time and date at job start Sat Apr 11 2020 06:20:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86804 * 120.00056 * 2 1 4 4 H 1.48503 * 109.47087 * 89.29514 * 3 2 1 5 5 H 1.48496 * 109.46980 * 329.29296 * 3 2 1 6 6 H 1.48500 * 109.46674 * 209.29093 * 3 2 1 7 7 C 1.38808 * 119.99770 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00215 * 36.73293 * 7 2 1 9 9 N 1.36945 * 120.00026 * 216.73593 * 7 2 1 10 10 C 1.47121 * 125.76472 * 357.53516 * 9 7 2 11 11 C 1.54536 * 107.26366 * 182.48161 * 10 9 7 12 12 C 1.54421 * 102.36666 * 22.02996 * 11 10 9 13 13 H 1.09007 * 110.71633 * 80.34962 * 12 11 10 14 14 C 1.48203 * 125.76583 * 177.84865 * 9 7 2 15 15 H 1.09002 * 111.53102 * 32.95430 * 14 9 7 16 16 C 1.53006 * 107.11761 * 270.83489 * 14 9 7 17 17 C 1.52736 * 110.79896 * 191.91750 * 16 14 9 18 18 C 1.53463 * 108.43867 * 63.77841 * 17 16 14 19 19 N 1.45123 * 111.61338 * 203.20770 * 12 11 10 20 20 C 1.34770 * 119.57595 * 248.63944 * 19 12 11 21 21 O 1.21559 * 119.99983 * 5.90100 * 20 19 12 22 22 C 1.47881 * 120.00204 * 185.89603 * 20 19 12 23 23 C 1.39897 * 125.69315 * 186.74043 * 22 20 19 24 24 C 1.38591 * 107.59046 * 179.97438 * 23 22 20 25 25 N 1.34110 * 132.34186 * 180.02562 * 24 23 22 26 26 C 1.31137 * 120.84005 * 180.02562 * 25 24 23 27 27 C 1.40347 * 120.29428 * 359.96546 * 26 25 24 28 28 C 1.35444 * 119.46736 * 0.02562 * 27 26 25 29 29 N 1.36674 * 119.13927 * 0.02562 * 28 27 26 30 30 N 1.32371 * 125.69007 * 6.42672 * 22 20 19 31 31 H 0.96995 * 120.00496 * 185.01840 * 1 2 3 32 32 H 1.08995 * 109.88584 * 302.02972 * 10 9 7 33 33 H 1.09003 * 109.88150 * 63.20752 * 10 9 7 34 34 H 1.09004 * 111.03633 * 263.73606 * 11 10 9 35 35 H 1.09003 * 110.67372 * 140.15879 * 11 10 9 36 36 H 1.09001 * 109.21529 * 312.25803 * 16 14 9 37 37 H 1.08998 * 109.21248 * 71.58359 * 16 14 9 38 38 H 1.09005 * 109.64733 * 183.46069 * 17 16 14 39 39 H 1.09001 * 109.64401 * 303.88246 * 17 16 14 40 40 H 1.08994 * 109.83282 * 61.45067 * 18 17 16 41 41 H 1.09007 * 109.83178 * 182.33660 * 18 17 16 42 42 H 1.07999 * 126.20385 * 359.95477 * 23 22 20 43 43 H 1.07996 * 119.84914 * 180.02562 * 26 25 24 44 44 H 1.08005 * 120.26292 * 179.97438 * 27 26 25 45 45 H 1.08001 * 120.43235 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4828 2.0551 1.4000 5 1 1.4552 2.6483 -0.7149 6 1 3.5552 1.4358 -0.6850 7 6 2.0102 -1.2021 0.0005 8 1 1.6310 -2.0448 -0.5584 9 7 3.1756 -1.3196 0.7100 10 6 3.8315 -0.2445 1.4704 11 6 5.1422 -0.8248 2.0478 12 6 5.4153 -2.0212 1.1105 13 1 5.8742 -1.6855 0.1804 14 6 3.9927 -2.5496 0.8360 15 1 3.9461 -3.1554 -0.0690 16 6 3.4656 -3.3181 2.0495 17 6 4.4228 -4.4437 2.4364 18 6 5.7560 -3.8195 2.8699 19 7 6.2568 -3.0177 1.7469 20 6 7.5139 -3.2098 1.3008 21 8 7.9731 -2.4795 0.4443 22 6 8.3348 -4.3088 1.8532 23 6 9.6877 -4.5349 1.5781 24 6 10.0780 -5.6577 2.2905 25 7 11.2497 -6.3028 2.3891 26 6 11.3695 -7.3671 3.1459 27 6 10.2675 -7.8496 3.8687 28 6 9.0784 -7.2074 3.7782 29 7 8.9785 -6.1010 2.9820 30 7 7.9136 -5.2393 2.6952 31 1 -0.4850 -0.8367 0.0735 32 1 4.0541 0.5939 0.8104 33 1 3.1836 0.0829 2.2836 34 1 5.0019 -1.1618 3.0749 35 1 5.9474 -0.0927 1.9859 36 1 3.3599 -2.6324 2.8902 37 1 2.4909 -3.7429 1.8093 38 1 4.0006 -5.0162 3.2623 39 1 4.5827 -5.0991 1.5803 40 1 5.6000 -3.1812 3.7395 41 1 6.4711 -4.6058 3.1120 42 1 10.3142 -3.9422 0.9280 43 1 12.3207 -7.8739 3.2138 44 1 10.3667 -8.7264 4.4914 45 1 8.2203 -7.5650 4.3280 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049809395.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:27 Heat of formation + Delta-G solvation = 148.210403 kcal Electronic energy + Delta-G solvation = -29954.976416 eV Core-core repulsion = 25976.783708 eV Total energy + Delta-G solvation = -3978.192708 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.74005 -40.52498 -38.66595 -37.79605 -35.51139 -34.47407 -32.55581 -32.53893 -31.57205 -29.61781 -29.34313 -28.71724 -26.03241 -24.98886 -23.96538 -23.79359 -22.62772 -21.97772 -20.80646 -19.94758 -18.72329 -18.49989 -18.03863 -17.33097 -16.97521 -16.52313 -16.09194 -15.75198 -15.30878 -15.06161 -14.88018 -14.32775 -14.10245 -13.90823 -13.72165 -13.51049 -13.40070 -13.21441 -12.96186 -12.87648 -12.50414 -12.13147 -11.89213 -11.69696 -11.56125 -11.27981 -11.02941 -10.97402 -10.60047 -10.53793 -10.34945 -10.19243 -10.01856 -9.97979 -9.69855 -9.60153 -9.22337 -8.50556 -8.36487 -8.27190 -7.10566 -6.38374 -3.08555 0.02449 0.28291 1.45812 1.54900 2.85177 2.90924 3.19487 3.41431 3.49052 3.59256 3.61558 3.73985 3.89095 4.30209 4.42114 4.67395 4.69671 4.82015 4.86942 5.02347 5.12900 5.17452 5.19034 5.28793 5.31711 5.36765 5.46628 5.53485 5.61688 5.75652 5.86552 5.87239 5.93224 6.01380 6.05521 6.17315 6.24831 6.29509 6.47031 6.58885 6.64584 6.75653 6.82411 6.89775 6.99688 7.13734 7.41680 7.71076 8.06494 8.35102 9.02628 9.61369 10.28988 11.09810 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.028789 B = 0.002704 C = 0.002552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.367554 B =10354.173107 C =10967.559654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C -0.007 4.007 3 Si 1.038 2.962 4 H -0.294 1.294 5 H -0.298 1.298 6 H -0.290 1.290 7 C -0.340 4.340 8 H 0.080 0.920 9 N -0.601 5.601 10 C 0.116 3.884 11 C -0.135 4.135 12 C 0.128 3.872 13 H 0.106 0.894 14 C 0.160 3.840 15 H 0.064 0.936 16 C -0.128 4.128 17 C -0.127 4.127 18 C 0.074 3.926 19 N -0.574 5.574 20 C 0.589 3.411 21 O -0.519 6.519 22 C 0.087 3.913 23 C -0.199 4.199 24 C 0.252 3.748 25 N -0.457 5.457 26 C 0.179 3.821 27 C -0.223 4.223 28 C 0.162 3.838 29 N -0.310 5.310 30 N -0.278 5.278 31 H 0.266 0.734 32 H 0.035 0.965 33 H 0.041 0.959 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.069 0.931 39 H 0.062 0.938 40 H 0.067 0.933 41 H 0.134 0.866 42 H 0.173 0.827 43 H 0.181 0.819 44 H 0.169 0.831 45 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.601 -18.550 12.311 31.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.209 4.209 3 Si 0.871 3.129 4 H -0.222 1.222 5 H -0.226 1.226 6 H -0.218 1.218 7 C -0.466 4.466 8 H 0.098 0.902 9 N -0.326 5.326 10 C -0.009 4.009 11 C -0.174 4.174 12 C 0.024 3.976 13 H 0.124 0.876 14 C 0.051 3.949 15 H 0.082 0.918 16 C -0.168 4.168 17 C -0.166 4.166 18 C -0.049 4.049 19 N -0.305 5.305 20 C 0.372 3.628 21 O -0.392 6.392 22 C -0.071 4.071 23 C -0.230 4.230 24 C 0.025 3.975 25 N -0.168 5.168 26 C -0.007 4.007 27 C -0.247 4.247 28 C 0.027 3.973 29 N -0.082 5.082 30 N -0.107 5.107 31 H 0.075 0.925 32 H 0.052 0.948 33 H 0.059 0.941 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.087 0.913 39 H 0.081 0.919 40 H 0.085 0.915 41 H 0.150 0.850 42 H 0.191 0.809 43 H 0.198 0.802 44 H 0.186 0.814 45 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 21.033 -16.288 11.706 29.064 hybrid contribution 0.150 -1.783 0.246 1.806 sum 21.182 -18.071 11.951 30.300 Atomic orbital electron populations 1.70898 1.06577 1.29363 1.46896 1.25526 0.95648 1.00605 0.99127 0.84272 0.74810 0.77463 0.76394 1.22155 1.22623 1.21761 1.19883 0.95986 1.00446 1.30301 0.90199 1.45134 1.25177 1.04701 1.57612 1.21623 0.91615 0.92480 0.95163 1.22796 0.98243 0.97259 0.99116 1.21960 0.91399 0.87583 0.96704 0.87626 1.21353 0.87737 0.89617 0.96157 0.91789 1.22059 0.98519 0.96542 0.99655 1.21859 0.95109 0.98486 1.01175 1.22908 0.98178 0.95913 0.87937 1.47484 1.11724 1.37821 1.33422 1.17118 0.81199 0.82343 0.82098 1.90827 1.71052 1.45580 1.31773 1.22217 0.94466 0.95006 0.95389 1.20978 0.94532 0.99276 1.08244 1.20559 0.83662 0.96847 0.96390 1.68268 1.20206 1.08856 1.19430 1.23465 0.99322 0.89847 0.88076 1.21883 0.92435 1.04399 1.05990 1.22144 1.00406 0.83921 0.90789 1.47634 1.10576 1.19511 1.30446 1.77837 1.05195 1.05115 1.22573 0.92452 0.94784 0.94095 0.91086 0.91088 0.91941 0.91880 0.91278 0.91891 0.91521 0.84961 0.80924 0.80159 0.81363 0.80126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.88 13.70 55.49 0.76 -27.12 16 2 C -0.01 -0.19 5.39 -17.43 -0.09 -0.29 16 3 Si 1.04 26.77 24.84 -169.99 -4.22 22.55 16 4 H -0.29 -7.21 6.89 56.52 0.39 -6.82 16 5 H -0.30 -7.78 7.11 56.52 0.40 -7.38 16 6 H -0.29 -7.25 6.55 56.52 0.37 -6.88 16 7 C -0.34 -9.67 10.37 -15.06 -0.16 -9.82 16 8 H 0.08 2.39 8.06 -52.49 -0.42 1.96 16 9 N -0.60 -14.73 2.88 -162.22 -0.47 -15.20 16 10 C 0.12 2.61 4.81 -2.90 -0.01 2.59 16 11 C -0.14 -2.45 6.08 -25.18 -0.15 -2.60 16 12 C 0.13 2.36 3.07 -67.29 -0.21 2.15 16 13 H 0.11 2.15 7.02 -51.93 -0.36 1.78 16 14 C 0.16 3.25 3.59 -66.36 -0.24 3.01 16 15 H 0.06 1.36 8.14 -51.93 -0.42 0.93 16 16 C -0.13 -2.25 5.10 -26.86 -0.14 -2.39 16 17 C -0.13 -1.74 6.11 -26.63 -0.16 -1.91 16 18 C 0.07 0.99 6.05 -3.64 -0.02 0.96 16 19 N -0.57 -9.13 2.73 -166.10 -0.45 -9.59 16 20 C 0.59 9.67 7.65 -12.32 -0.09 9.57 16 21 O -0.52 -9.93 16.25 5.31 0.09 -9.84 16 22 C 0.09 1.23 6.80 -83.07 -0.56 0.66 16 23 C -0.20 -2.62 10.66 -38.83 -0.41 -3.03 16 24 C 0.25 2.90 7.90 -155.43 -1.23 1.67 16 25 N -0.46 -4.35 10.48 -12.22 -0.13 -4.48 16 26 C 0.18 0.88 11.27 -17.06 -0.19 0.68 16 27 C -0.22 -0.70 10.05 -39.79 -0.40 -1.10 16 28 C 0.16 0.89 11.30 -16.39 -0.19 0.71 16 29 N -0.31 -3.15 3.90 -12.20 -0.05 -3.20 16 30 N -0.28 -3.41 8.94 33.23 0.30 -3.11 16 31 H 0.27 8.12 8.73 -40.82 -0.36 7.77 16 32 H 0.03 0.81 4.16 -51.93 -0.22 0.60 16 33 H 0.04 0.95 7.64 -51.93 -0.40 0.56 16 34 H 0.07 1.17 6.81 -51.93 -0.35 0.81 16 35 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 36 H 0.06 1.14 7.13 -51.93 -0.37 0.77 16 37 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 38 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.07 0.85 7.53 -51.93 -0.39 0.46 16 41 H 0.13 1.64 3.53 -138.15 -0.49 1.16 16 42 H 0.17 2.16 8.06 -52.49 -0.42 1.74 16 43 H 0.18 0.17 8.06 -52.49 -0.42 -0.25 16 44 H 0.17 -0.14 8.06 -52.48 -0.42 -0.56 16 45 H 0.18 0.42 8.06 -52.49 -0.42 -0.01 16 LS Contribution 354.01 15.07 5.33 5.33 Total: -1.00 -35.66 354.01 -9.11 -44.76 By element: Atomic # 1 Polarization: 5.03 SS G_CDS: -6.00 Total: -0.98 kcal Atomic # 6 Polarization: 5.13 SS G_CDS: -4.26 Total: 0.87 kcal Atomic # 7 Polarization: -62.65 SS G_CDS: -0.04 Total: -62.69 kcal Atomic # 8 Polarization: -9.93 SS G_CDS: 0.09 Total: -9.84 kcal Atomic # 14 Polarization: 26.77 SS G_CDS: -4.22 Total: 22.55 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -35.66 -9.11 -44.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049809395.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 192.973 kcal (2) G-P(sol) polarization free energy of solvation -35.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 157.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.763 kcal (6) G-S(sol) free energy of system = (1) + (5) 148.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds