Wall clock time and date at job start Sat Apr 11 2020 06:20:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86804 * 120.00056 * 2 1 4 4 H 1.48503 * 109.47087 * 89.29514 * 3 2 1 5 5 H 1.48496 * 109.46980 * 329.29296 * 3 2 1 6 6 H 1.48500 * 109.46674 * 209.29093 * 3 2 1 7 7 C 1.38808 * 119.99770 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00215 * 36.73293 * 7 2 1 9 9 N 1.36945 * 120.00026 * 216.73593 * 7 2 1 10 10 C 1.47121 * 125.76472 * 357.53516 * 9 7 2 11 11 C 1.54536 * 107.26366 * 182.48161 * 10 9 7 12 12 C 1.54421 * 102.36666 * 22.02996 * 11 10 9 13 13 H 1.09007 * 110.71633 * 80.34962 * 12 11 10 14 14 C 1.48203 * 125.76583 * 177.84865 * 9 7 2 15 15 H 1.09002 * 111.53102 * 32.95430 * 14 9 7 16 16 C 1.53006 * 107.11761 * 270.83489 * 14 9 7 17 17 C 1.52736 * 110.79896 * 191.91750 * 16 14 9 18 18 C 1.53463 * 108.43867 * 63.77841 * 17 16 14 19 19 N 1.45123 * 111.61338 * 203.20770 * 12 11 10 20 20 C 1.34770 * 119.57595 * 248.63944 * 19 12 11 21 21 O 1.21559 * 119.99983 * 5.90100 * 20 19 12 22 22 C 1.47881 * 120.00204 * 185.89603 * 20 19 12 23 23 C 1.39897 * 125.69315 * 186.74043 * 22 20 19 24 24 C 1.38591 * 107.59046 * 179.97438 * 23 22 20 25 25 N 1.34110 * 132.34186 * 180.02562 * 24 23 22 26 26 C 1.31137 * 120.84005 * 180.02562 * 25 24 23 27 27 C 1.40347 * 120.29428 * 359.96546 * 26 25 24 28 28 C 1.35444 * 119.46736 * 0.02562 * 27 26 25 29 29 N 1.36674 * 119.13927 * 0.02562 * 28 27 26 30 30 N 1.32371 * 125.69007 * 6.42672 * 22 20 19 31 31 H 0.96995 * 120.00496 * 185.01840 * 1 2 3 32 32 H 1.08995 * 109.88584 * 302.02972 * 10 9 7 33 33 H 1.09003 * 109.88150 * 63.20752 * 10 9 7 34 34 H 1.09004 * 111.03633 * 263.73606 * 11 10 9 35 35 H 1.09003 * 110.67372 * 140.15879 * 11 10 9 36 36 H 1.09001 * 109.21529 * 312.25803 * 16 14 9 37 37 H 1.08998 * 109.21248 * 71.58359 * 16 14 9 38 38 H 1.09005 * 109.64733 * 183.46069 * 17 16 14 39 39 H 1.09001 * 109.64401 * 303.88246 * 17 16 14 40 40 H 1.08994 * 109.83282 * 61.45067 * 18 17 16 41 41 H 1.09007 * 109.83178 * 182.33660 * 18 17 16 42 42 H 1.07999 * 126.20385 * 359.95477 * 23 22 20 43 43 H 1.07996 * 119.84914 * 180.02562 * 26 25 24 44 44 H 1.08005 * 120.26292 * 179.97438 * 27 26 25 45 45 H 1.08001 * 120.43235 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4828 2.0551 1.4000 5 1 1.4552 2.6483 -0.7149 6 1 3.5552 1.4358 -0.6850 7 6 2.0102 -1.2021 0.0005 8 1 1.6310 -2.0448 -0.5584 9 7 3.1756 -1.3196 0.7100 10 6 3.8315 -0.2445 1.4704 11 6 5.1422 -0.8248 2.0478 12 6 5.4153 -2.0212 1.1105 13 1 5.8742 -1.6855 0.1804 14 6 3.9927 -2.5496 0.8360 15 1 3.9461 -3.1554 -0.0690 16 6 3.4656 -3.3181 2.0495 17 6 4.4228 -4.4437 2.4364 18 6 5.7560 -3.8195 2.8699 19 7 6.2568 -3.0177 1.7469 20 6 7.5139 -3.2098 1.3008 21 8 7.9731 -2.4795 0.4443 22 6 8.3348 -4.3088 1.8532 23 6 9.6877 -4.5349 1.5781 24 6 10.0780 -5.6577 2.2905 25 7 11.2497 -6.3028 2.3891 26 6 11.3695 -7.3671 3.1459 27 6 10.2675 -7.8496 3.8687 28 6 9.0784 -7.2074 3.7782 29 7 8.9785 -6.1010 2.9820 30 7 7.9136 -5.2393 2.6952 31 1 -0.4850 -0.8367 0.0735 32 1 4.0541 0.5939 0.8104 33 1 3.1836 0.0829 2.2836 34 1 5.0019 -1.1618 3.0749 35 1 5.9474 -0.0927 1.9859 36 1 3.3599 -2.6324 2.8902 37 1 2.4909 -3.7429 1.8093 38 1 4.0006 -5.0162 3.2623 39 1 4.5827 -5.0991 1.5803 40 1 5.6000 -3.1812 3.7395 41 1 6.4711 -4.6058 3.1120 42 1 10.3142 -3.9422 0.9280 43 1 12.3207 -7.8739 3.2138 44 1 10.3667 -8.7264 4.4914 45 1 8.2203 -7.5650 4.3280 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049809395.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:26 Heat of formation + Delta-G solvation = 123.671045 kcal Electronic energy + Delta-G solvation = -29956.040522 eV Core-core repulsion = 25976.783708 eV Total energy + Delta-G solvation = -3979.256814 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.46778 -41.83201 -39.86875 -38.77143 -37.02367 -35.09232 -34.53845 -33.90310 -32.46924 -31.09516 -30.41756 -30.12620 -27.14686 -25.96814 -25.57667 -24.76519 -23.65037 -23.26904 -22.46651 -21.24487 -19.95128 -19.45656 -19.24754 -18.97172 -17.59355 -17.41328 -17.26912 -17.17122 -16.57554 -16.19757 -15.83043 -15.69694 -15.56278 -15.33202 -15.04245 -14.78724 -14.58304 -14.34767 -13.99089 -13.89019 -13.72032 -13.60497 -13.48680 -12.99828 -12.88253 -12.63418 -12.42300 -12.39139 -12.31774 -11.94667 -11.85186 -11.63250 -11.42717 -11.28809 -11.15289 -10.71226 -10.60217 -10.49122 -9.81636 -9.16654 -9.12536 -8.70629 -5.32949 -0.53303 -0.34792 0.63831 0.79338 1.40209 1.50646 1.66484 1.70398 2.01708 2.41355 2.52470 2.73307 2.82849 2.89502 3.29502 3.44068 3.60355 3.68244 3.71769 3.91166 3.99141 4.01264 4.06042 4.16822 4.20833 4.29390 4.36733 4.39989 4.47078 4.58583 4.62521 4.64842 4.78279 4.79797 4.92324 4.97501 5.03447 5.09300 5.09648 5.18894 5.25246 5.31160 5.44682 5.54655 5.63509 6.03404 6.08479 6.25210 6.58413 6.78644 6.82412 7.46225 8.14197 8.78898 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.028789 B = 0.002704 C = 0.002552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.367554 B =10354.173107 C =10967.559654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.059 4.059 3 Si 1.082 2.918 4 H -0.271 1.271 5 H -0.303 1.303 6 H -0.282 1.282 7 C -0.329 4.329 8 H 0.051 0.949 9 N -0.620 5.620 10 C 0.110 3.890 11 C -0.121 4.121 12 C 0.140 3.860 13 H 0.081 0.919 14 C 0.154 3.846 15 H 0.044 0.956 16 C -0.117 4.117 17 C -0.115 4.115 18 C 0.075 3.925 19 N -0.573 5.573 20 C 0.589 3.411 21 O -0.557 6.557 22 C 0.070 3.930 23 C -0.234 4.234 24 C 0.254 3.746 25 N -0.497 5.497 26 C 0.189 3.811 27 C -0.189 4.189 28 C 0.137 3.863 29 N -0.307 5.307 30 N -0.287 5.287 31 H 0.254 0.746 32 H 0.025 0.975 33 H 0.035 0.965 34 H 0.095 0.905 35 H 0.088 0.912 36 H 0.060 0.940 37 H 0.042 0.958 38 H 0.102 0.898 39 H 0.058 0.942 40 H 0.081 0.919 41 H 0.151 0.849 42 H 0.161 0.839 43 H 0.225 0.775 44 H 0.223 0.777 45 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.778 -21.618 15.916 36.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.256 4.256 3 Si 0.910 3.090 4 H -0.198 1.198 5 H -0.231 1.231 6 H -0.209 1.209 7 C -0.457 4.457 8 H 0.069 0.931 9 N -0.346 5.346 10 C -0.014 4.014 11 C -0.159 4.159 12 C 0.035 3.965 13 H 0.099 0.901 14 C 0.047 3.953 15 H 0.063 0.937 16 C -0.157 4.157 17 C -0.154 4.154 18 C -0.047 4.047 19 N -0.303 5.303 20 C 0.375 3.625 21 O -0.434 6.434 22 C -0.086 4.086 23 C -0.266 4.266 24 C 0.025 3.975 25 N -0.210 5.210 26 C 0.006 3.994 27 C -0.211 4.211 28 C 0.005 3.995 29 N -0.078 5.078 30 N -0.118 5.118 31 H 0.063 0.937 32 H 0.043 0.957 33 H 0.053 0.947 34 H 0.113 0.887 35 H 0.106 0.894 36 H 0.079 0.921 37 H 0.061 0.939 38 H 0.120 0.880 39 H 0.077 0.923 40 H 0.099 0.901 41 H 0.167 0.833 42 H 0.179 0.821 43 H 0.241 0.759 44 H 0.240 0.760 45 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges 24.243 -19.425 15.369 34.659 hybrid contribution -0.627 -1.237 -0.791 1.597 sum 23.616 -20.663 14.578 34.600 Atomic orbital electron populations 1.70985 1.07509 1.28683 1.50222 1.26581 0.95766 1.03580 0.99646 0.83639 0.73780 0.73937 0.77611 1.19763 1.23081 1.20931 1.19743 0.97284 0.99309 1.29332 0.93146 1.45184 1.24996 1.07051 1.57404 1.21720 0.93305 0.91913 0.94498 1.22742 0.96307 0.97082 0.99795 1.21512 0.90235 0.88390 0.96409 0.90057 1.21520 0.88744 0.88327 0.96729 0.93750 1.21868 0.98432 0.97448 0.97915 1.21797 0.94365 0.97012 1.02218 1.23136 0.98066 0.96354 0.87177 1.47462 1.11398 1.37526 1.33879 1.17434 0.81218 0.82483 0.81364 1.90790 1.71951 1.47186 1.33439 1.21642 0.94422 0.95341 0.97172 1.20930 0.94539 1.01071 1.10056 1.20519 0.84693 0.96400 0.95876 1.68374 1.19322 1.11147 1.22113 1.24452 1.01718 0.87754 0.85429 1.22575 0.90359 1.04311 1.03895 1.23108 1.02930 0.82791 0.90710 1.47741 1.09457 1.20091 1.30541 1.77504 1.06167 1.05397 1.22721 0.93718 0.95724 0.94689 0.88695 0.89379 0.92089 0.93943 0.87961 0.92293 0.90079 0.83285 0.82105 0.75862 0.76039 0.76752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -60.02 13.70 21.65 0.30 -59.72 16 2 C -0.06 -3.56 5.39 84.86 0.46 -3.11 16 3 Si 1.08 55.33 24.84 68.60 1.70 57.03 16 4 H -0.27 -12.79 6.89 99.48 0.69 -12.10 16 5 H -0.30 -15.57 7.11 99.48 0.71 -14.86 16 6 H -0.28 -13.91 6.55 99.48 0.65 -13.26 16 7 C -0.33 -19.51 10.37 84.03 0.87 -18.64 16 8 H 0.05 3.21 8.06 -2.91 -0.02 3.19 16 9 N -0.62 -31.23 2.88 -667.14 -1.92 -33.15 16 10 C 0.11 4.92 4.81 86.78 0.42 5.34 16 11 C -0.12 -4.23 6.08 31.60 0.19 -4.04 16 12 C 0.14 5.22 3.07 46.14 0.14 5.36 16 13 H 0.08 3.44 7.02 -2.38 -0.02 3.43 16 14 C 0.15 6.43 3.59 45.08 0.16 6.59 16 15 H 0.04 2.00 8.14 -2.39 -0.02 1.98 16 16 C -0.12 -4.10 5.10 30.51 0.16 -3.94 16 17 C -0.12 -2.94 6.11 30.66 0.19 -2.75 16 18 C 0.07 1.84 6.05 86.48 0.52 2.36 16 19 N -0.57 -18.05 2.73 -797.71 -2.18 -20.23 16 20 C 0.59 19.82 7.65 86.80 0.66 20.49 16 21 O -0.56 -22.41 16.25 -3.90 -0.06 -22.48 16 22 C 0.07 2.00 6.80 42.02 0.29 2.28 16 23 C -0.23 -6.37 10.66 22.76 0.24 -6.12 16 24 C 0.25 5.54 7.90 133.00 1.05 6.59 16 25 N -0.50 -8.25 10.48 -192.58 -2.02 -10.27 16 26 C 0.19 0.90 11.27 85.31 0.96 1.86 16 27 C -0.19 0.01 10.05 22.14 0.22 0.23 16 28 C 0.14 0.84 11.30 83.29 0.94 1.78 16 29 N -0.31 -5.45 3.90 -192.51 -0.75 -6.20 16 30 N -0.29 -6.61 8.94 -48.79 -0.44 -7.05 16 31 H 0.25 16.33 8.73 -92.71 -0.81 15.52 16 32 H 0.03 1.17 4.16 -2.39 -0.01 1.16 16 33 H 0.04 1.60 7.64 -2.39 -0.02 1.59 16 34 H 0.09 2.88 6.81 -2.38 -0.02 2.87 16 35 H 0.09 2.83 8.14 -2.39 -0.02 2.81 16 36 H 0.06 2.16 7.13 -2.39 -0.02 2.14 16 37 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 38 H 0.10 2.01 8.14 -2.38 -0.02 1.99 16 39 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 40 H 0.08 1.80 7.53 -2.39 -0.02 1.78 16 41 H 0.15 3.34 3.53 -115.16 -0.41 2.94 16 42 H 0.16 4.45 8.06 -2.91 -0.02 4.43 16 43 H 0.23 -1.01 8.06 -2.91 -0.02 -1.04 16 44 H 0.22 -2.30 8.06 -2.91 -0.02 -2.33 16 45 H 0.22 -0.26 8.06 -2.91 -0.02 -0.28 16 Total: -1.00 -85.30 354.01 2.62 -82.68 By element: Atomic # 1 Polarization: 4.60 SS G_CDS: 0.52 Total: 5.12 kcal Atomic # 6 Polarization: 6.81 SS G_CDS: 7.48 Total: 14.28 kcal Atomic # 7 Polarization: -129.62 SS G_CDS: -7.01 Total: -136.63 kcal Atomic # 8 Polarization: -22.41 SS G_CDS: -0.06 Total: -22.48 kcal Atomic # 14 Polarization: 55.33 SS G_CDS: 1.70 Total: 57.03 kcal Total: -85.30 2.62 -82.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049809395.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 206.347 kcal (2) G-P(sol) polarization free energy of solvation -85.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.676 kcal (6) G-S(sol) free energy of system = (1) + (5) 123.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds