Wall clock time and date at job start Sat Apr 11 2020 06:20:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86802 * 119.99828 * 2 1 4 4 H 1.48498 * 109.47139 * 269.99806 * 3 2 1 5 5 H 1.48492 * 109.47244 * 30.00060 * 3 2 1 6 6 H 1.48505 * 109.47034 * 150.00316 * 3 2 1 7 7 C 1.38811 * 119.99988 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00080 * 180.02562 * 7 2 1 9 9 N 1.36934 * 120.00082 * 359.97438 * 7 2 1 10 10 C 1.48540 * 125.78121 * 179.88097 * 9 7 2 11 11 C 1.55531 * 104.60122 * 204.64218 * 10 9 7 12 12 H 1.08995 * 112.58884 * 201.56913 * 11 10 9 13 13 C 1.52947 * 107.01052 * 77.74542 * 11 10 9 14 14 C 1.52752 * 110.77443 * 195.24270 * 13 11 10 15 15 C 1.53453 * 108.48927 * 63.64587 * 14 13 11 16 16 N 1.46810 * 107.65505 * 302.06404 * 15 14 13 17 17 C 1.34778 * 119.61227 * 232.18609 * 16 15 14 18 18 O 1.21686 * 119.99994 * 184.20287 * 17 16 15 19 19 C 1.46808 * 120.00047 * 4.19999 * 17 16 15 20 20 C 1.40414 * 126.54597 * 309.60947 * 19 17 16 21 21 N 1.30971 * 108.76765 * 180.02562 * 20 19 17 22 22 N 1.39717 * 109.49262 * 359.79105 * 21 20 19 23 23 C 1.36348 * 133.19794 * 179.56279 * 22 21 20 24 24 C 1.35294 * 119.80673 * 180.35762 * 23 22 21 25 25 N 1.33247 * 121.27694 * 0.26872 * 24 23 22 26 26 C 1.31405 * 121.07513 * 359.97438 * 25 24 23 27 27 C 1.36826 * 107.95925 * 0.34506 * 22 21 20 28 28 C 1.45168 * 120.77170 * 52.45871 * 16 15 14 29 29 H 1.08994 * 109.71323 * 191.94657 * 28 16 15 30 30 C 1.47285 * 125.70361 * 359.97438 * 9 7 2 31 31 H 0.97006 * 119.99792 * 0.02562 * 1 2 3 32 32 H 1.08994 * 110.52578 * 85.82378 * 10 9 7 33 33 H 1.09005 * 110.34911 * 323.36973 * 10 9 7 34 34 H 1.08995 * 109.21890 * 74.90419 * 13 11 10 35 35 H 1.09002 * 109.21705 * 315.57329 * 13 11 10 36 36 H 1.09002 * 109.63251 * 303.94873 * 14 13 11 37 37 H 1.08996 * 109.80030 * 183.44186 * 14 13 11 38 38 H 1.08998 * 109.82052 * 182.52521 * 15 14 13 39 39 H 1.08993 * 109.82111 * 61.60050 * 15 14 13 40 40 H 1.08001 * 125.61301 * 0.02785 * 20 19 17 41 41 H 1.07996 * 120.09558 * 0.62542 * 23 22 21 42 42 H 1.08000 * 119.36327 * 180.25352 * 24 23 22 43 43 H 1.07998 * 120.18335 * 180.02562 * 26 25 24 44 44 H 1.08997 * 109.98743 * 59.60734 * 30 9 7 45 45 H 1.09005 * 109.98268 * 298.30245 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6526 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2022 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 1.9349 -3.7427 -0.0036 11 6 0.8468 -4.6607 -0.6299 12 1 0.9812 -5.7096 -0.3658 13 6 0.8862 -4.4338 -2.1419 14 6 -0.3714 -4.9908 -2.8063 15 6 -1.5845 -4.2093 -2.2843 16 7 -1.6098 -4.3504 -0.8232 17 6 -2.7375 -4.7670 -0.2139 18 8 -2.7912 -4.8133 1.0009 19 6 -3.9012 -5.1648 -1.0157 20 6 -4.4905 -4.4290 -2.0563 21 7 -5.5054 -5.1078 -2.5301 22 7 -5.6267 -6.3125 -1.8330 23 6 -6.4988 -7.3571 -1.9193 24 6 -6.3681 -8.4131 -1.0837 25 7 -5.4020 -8.4544 -0.1669 26 6 -4.5414 -7.4691 -0.0435 27 6 -4.6382 -6.3545 -0.8879 28 6 -0.4364 -4.0409 -0.0266 29 1 -0.5771 -4.4034 0.9915 30 6 -0.1400 -2.5344 0.0005 31 1 -0.4850 0.8401 -0.0004 32 1 2.1617 -4.0620 1.0136 33 1 2.8371 -3.7511 -0.6154 34 1 1.7621 -4.9325 -2.5569 35 1 0.9544 -3.3646 -2.3427 36 1 -0.4807 -6.0462 -2.5567 37 1 -0.2995 -4.8758 -3.8878 38 1 -2.4998 -4.6191 -2.7112 39 1 -1.4894 -3.1571 -2.5524 40 1 -4.1611 -3.4624 -2.4080 41 1 -7.2889 -7.3435 -2.6553 42 1 -7.0603 -9.2385 -1.1610 43 1 -3.7637 -7.5178 0.7042 44 1 -0.5629 -2.0554 -0.8825 45 1 -0.5582 -2.0886 0.9030 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050064778.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:35 Heat of formation + Delta-G solvation = 129.767974 kcal Electronic energy + Delta-G solvation = -30349.894670 eV Core-core repulsion = 26370.902239 eV Total energy + Delta-G solvation = -3978.992432 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.76603 -40.17440 -38.62830 -37.70269 -35.19479 -33.92145 -32.76664 -31.90171 -31.64727 -29.94409 -29.03929 -27.32669 -25.54625 -25.10299 -24.53953 -23.58987 -22.50564 -21.91630 -20.49764 -19.87775 -18.70875 -17.98130 -17.69023 -16.93163 -16.82986 -16.30253 -15.99926 -15.45316 -15.26909 -14.85339 -14.55503 -14.32102 -14.05021 -13.86419 -13.68265 -13.30941 -13.26066 -13.14307 -12.72473 -12.48059 -12.02168 -11.83098 -11.57159 -11.40410 -11.20111 -10.99258 -10.97830 -10.77869 -10.65341 -10.38046 -10.32869 -10.28892 -10.05655 -9.89491 -9.81200 -9.59884 -9.55657 -8.59691 -8.22180 -8.02337 -6.82468 -5.69152 -3.03050 0.09980 0.54552 1.63358 2.01612 2.88133 3.10864 3.36540 3.40932 3.46387 3.48257 3.78629 3.85895 3.94893 4.49604 4.51108 4.62210 4.76111 4.92001 5.00536 5.07744 5.16096 5.21359 5.29919 5.38866 5.50358 5.52191 5.68972 5.71065 5.76127 5.88424 5.97523 6.03230 6.10490 6.15773 6.18908 6.29003 6.33229 6.46382 6.65885 6.75685 6.91891 6.95121 6.99426 7.25150 7.51671 7.57457 7.80034 7.84154 8.24015 8.47235 9.21895 9.81911 10.48421 11.41898 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.019901 B = 0.003039 C = 0.002928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.638177 B = 9210.989532 C = 9559.849892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.008 4.008 3 Si 0.911 3.089 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.225 4.225 8 H 0.078 0.922 9 N -0.604 5.604 10 C 0.135 3.865 11 C -0.110 4.110 12 H 0.077 0.923 13 C -0.110 4.110 14 C -0.129 4.129 15 C 0.101 3.899 16 N -0.577 5.577 17 C 0.590 3.410 18 O -0.538 6.538 19 C -0.251 4.251 20 C 0.113 3.887 21 N -0.301 5.301 22 N -0.252 5.252 23 C 0.066 3.934 24 C 0.022 3.978 25 N -0.446 5.446 26 C 0.169 3.831 27 C 0.080 3.920 28 C 0.119 3.881 29 H 0.093 0.907 30 C 0.178 3.822 31 H 0.252 0.748 32 H 0.022 0.978 33 H 0.044 0.956 34 H 0.055 0.945 35 H 0.082 0.918 36 H 0.060 0.940 37 H 0.069 0.931 38 H 0.081 0.919 39 H 0.079 0.921 40 H 0.208 0.792 41 H 0.181 0.819 42 H 0.185 0.815 43 H 0.189 0.811 44 H 0.051 0.949 45 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.643 -16.712 -7.718 21.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.204 4.204 3 Si 0.741 3.259 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.208 1.208 7 C -0.354 4.354 8 H 0.096 0.904 9 N -0.331 5.331 10 C 0.009 3.991 11 C -0.130 4.130 12 H 0.095 0.905 13 C -0.147 4.147 14 C -0.167 4.167 15 C -0.022 4.022 16 N -0.307 5.307 17 C 0.377 3.623 18 O -0.416 6.416 19 C -0.269 4.269 20 C -0.065 4.065 21 N -0.125 5.125 22 N -0.020 5.020 23 C -0.063 4.063 24 C -0.119 4.119 25 N -0.157 5.157 26 C -0.011 4.011 27 C -0.042 4.042 28 C 0.015 3.985 29 H 0.112 0.888 30 C 0.053 3.947 31 H 0.062 0.938 32 H 0.040 0.960 33 H 0.063 0.937 34 H 0.074 0.926 35 H 0.101 0.899 36 H 0.078 0.922 37 H 0.088 0.912 38 H 0.099 0.901 39 H 0.097 0.903 40 H 0.224 0.776 41 H 0.198 0.802 42 H 0.202 0.798 43 H 0.206 0.794 44 H 0.069 0.931 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -11.757 -17.195 -7.563 22.160 hybrid contribution 0.881 1.790 -0.141 2.000 sum -10.876 -15.405 -7.704 20.370 Atomic orbital electron populations 1.69958 1.04794 1.24953 1.57079 1.24785 0.95700 0.97568 1.02384 0.86139 0.78606 0.83668 0.77460 1.21718 1.21747 1.20754 1.19035 0.90370 0.82234 1.43718 0.90404 1.44673 1.01188 0.99809 1.87418 1.21948 0.94324 0.85913 0.96917 1.22657 0.96275 0.98345 0.95763 0.90469 1.21439 0.96177 1.02890 0.94210 1.21847 0.95614 0.99485 0.99778 1.22005 0.99009 1.01364 0.79850 1.47321 1.11592 1.64654 1.07165 1.16988 0.81415 0.77311 0.86609 1.90808 1.82546 1.54870 1.13376 1.19859 1.04371 0.96847 1.05869 1.24307 0.90820 0.99449 0.91914 1.77693 1.23046 0.91671 1.20100 1.46163 1.19484 1.13903 1.22413 1.22614 0.95220 0.85876 1.02566 1.22392 0.98682 0.97849 0.93010 1.68239 1.02635 1.26364 1.18491 1.23124 0.97010 0.85447 0.95563 1.20280 0.91933 0.98018 0.93963 1.21978 0.82650 0.99361 0.94528 0.88848 1.21245 0.84621 0.87349 1.01516 0.93804 0.96029 0.93726 0.92613 0.89933 0.92164 0.91219 0.90133 0.90298 0.77578 0.80229 0.79816 0.79414 0.93088 0.93580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.67 10.33 55.49 0.57 -26.10 16 2 C -0.01 -0.23 5.49 -17.43 -0.10 -0.32 16 3 Si 0.91 21.93 29.55 -169.99 -5.02 16.91 16 4 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 5 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.23 -6.13 10.30 -15.06 -0.16 -6.28 16 8 H 0.08 2.05 7.83 -52.48 -0.41 1.64 16 9 N -0.60 -14.91 3.02 -169.03 -0.51 -15.42 16 10 C 0.14 2.69 6.58 -1.57 -0.01 2.68 16 11 C -0.11 -1.86 3.73 -88.38 -0.33 -2.19 16 12 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 13 C -0.11 -1.68 4.82 -26.89 -0.13 -1.81 16 14 C -0.13 -1.64 6.10 -26.62 -0.16 -1.80 16 15 C 0.10 1.37 5.56 -3.64 -0.02 1.35 16 16 N -0.58 -9.54 2.71 -166.66 -0.45 -9.99 16 17 C 0.59 10.00 7.52 -12.79 -0.10 9.90 16 18 O -0.54 -10.91 16.45 5.20 0.09 -10.83 16 19 C -0.25 -3.53 5.10 -104.75 -0.53 -4.06 16 20 C 0.11 1.39 9.55 -17.10 -0.16 1.23 16 21 N -0.30 -3.74 12.60 30.76 0.39 -3.35 16 22 N -0.25 -2.90 3.91 -10.50 -0.04 -2.94 16 23 C 0.07 0.52 11.24 -16.59 -0.19 0.33 16 24 C 0.02 0.16 11.07 -17.99 -0.20 -0.04 16 25 N -0.45 -4.59 10.44 -13.26 -0.14 -4.73 16 26 C 0.17 1.93 11.31 -17.01 -0.19 1.73 16 27 C 0.08 1.02 6.81 -84.05 -0.57 0.45 16 28 C 0.12 2.28 2.91 -67.44 -0.20 2.08 16 29 H 0.09 1.93 6.98 -51.93 -0.36 1.57 16 30 C 0.18 4.26 4.56 -3.32 -0.02 4.24 16 31 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 32 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.04 0.85 7.99 -51.93 -0.41 0.44 16 34 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 35 H 0.08 1.54 7.26 -51.93 -0.38 1.16 16 36 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.08 0.93 4.55 -51.93 -0.24 0.69 16 39 H 0.08 1.16 7.52 -51.93 -0.39 0.77 16 40 H 0.21 2.08 7.63 -52.49 -0.40 1.68 16 41 H 0.18 0.77 8.06 -52.49 -0.42 0.34 16 42 H 0.18 0.64 8.06 -52.49 -0.42 0.22 16 43 H 0.19 2.00 8.06 -52.49 -0.42 1.58 16 44 H 0.05 1.31 6.49 -51.93 -0.34 0.98 16 45 H 0.05 1.29 7.52 -51.93 -0.39 0.90 16 LS Contribution 359.95 15.07 5.42 5.42 Total: -1.00 -33.95 359.95 -8.59 -42.54 By element: Atomic # 1 Polarization: 6.82 SS G_CDS: -5.84 Total: 0.99 kcal Atomic # 6 Polarization: 10.56 SS G_CDS: -3.06 Total: 7.50 kcal Atomic # 7 Polarization: -62.35 SS G_CDS: -0.18 Total: -62.53 kcal Atomic # 8 Polarization: -10.91 SS G_CDS: 0.09 Total: -10.83 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -33.95 -8.59 -42.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050064778.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.306 kcal (2) G-P(sol) polarization free energy of solvation -33.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 138.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.538 kcal (6) G-S(sol) free energy of system = (1) + (5) 129.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds