Wall clock time and date at job start Sat Apr 11 2020 06:20:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86797 * 119.99936 * 2 1 4 4 H 1.48500 * 109.47077 * 359.97438 * 3 2 1 5 5 H 1.48501 * 109.47117 * 120.00182 * 3 2 1 6 6 H 1.48501 * 109.47271 * 239.99961 * 3 2 1 7 7 C 1.38815 * 119.99925 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99779 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99936 * 0.02562 * 7 2 1 10 10 C 1.46829 * 125.37705 * 179.97438 * 9 7 2 11 11 C 1.53895 * 107.49988 * 181.00216 * 10 9 7 12 12 H 1.09000 * 109.09596 * 260.22552 * 11 10 9 13 13 C 1.50780 * 110.58611 * 140.15597 * 11 10 9 14 14 C 1.51319 * 113.46963 * 289.13216 * 13 11 10 15 15 C 1.51611 * 112.05765 * 304.71498 * 14 13 11 16 16 N 1.44509 * 112.73300 * 42.33600 * 15 14 13 17 17 C 1.34780 * 116.64667 * 154.43944 * 16 15 14 18 18 O 1.21598 * 119.99782 * 175.59319 * 17 16 15 19 19 C 1.47575 * 120.00159 * 355.58920 * 17 16 15 20 20 C 1.36477 * 125.91890 * 187.09360 * 19 17 16 21 21 N 1.36190 * 107.01579 * 179.97438 * 20 19 17 22 22 C 1.36676 * 132.44880 * 180.02562 * 21 20 19 23 23 C 1.35476 * 119.09981 * 179.97438 * 22 21 20 24 24 C 1.40301 * 119.35801 * 359.97438 * 23 22 21 25 25 N 1.31136 * 120.41703 * 359.97438 * 24 23 22 26 26 C 1.34288 * 120.94442 * 0.02562 * 25 24 23 27 27 N 1.32209 * 131.65807 * 180.33771 * 26 25 24 28 28 C 1.44110 * 126.70006 * 334.46921 * 16 15 14 29 29 H 1.09004 * 109.49509 * 254.12353 * 28 16 15 30 30 C 1.46909 * 125.38147 * 359.69087 * 9 7 2 31 31 H 0.96999 * 120.00546 * 0.02562 * 1 2 3 32 32 H 1.08996 * 109.84790 * 300.49435 * 10 9 7 33 33 H 1.09004 * 109.84129 * 61.52219 * 10 9 7 34 34 H 1.09001 * 108.68167 * 50.15900 * 13 11 10 35 35 H 1.09000 * 108.68498 * 168.09743 * 13 11 10 36 36 H 1.09004 * 108.96952 * 65.37599 * 14 13 11 37 37 H 1.09003 * 108.96751 * 184.13819 * 14 13 11 38 38 H 1.08995 * 108.83381 * 163.17669 * 15 14 13 39 39 H 1.09000 * 108.83213 * 281.50494 * 15 14 13 40 40 H 1.08005 * 126.49073 * 0.02562 * 20 19 17 41 41 H 1.07998 * 120.45183 * 359.94201 * 22 21 20 42 42 H 1.07999 * 120.31910 * 180.02562 * 23 22 21 43 43 H 1.08009 * 119.79048 * 180.02562 * 24 23 22 44 44 H 1.09007 * 110.08270 * 281.32601 * 30 9 7 45 45 H 1.08999 * 110.08294 * 42.89861 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2851 2.7464 -0.0006 5 1 3.1039 1.6964 1.2125 6 1 3.1039 1.6964 -1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0016 10 6 1.9373 -3.7229 -0.0028 11 6 0.7960 -4.7549 -0.0294 12 1 0.6327 -5.1321 0.9802 13 6 1.1440 -5.9069 -0.9378 14 6 1.1355 -5.5406 -2.4059 15 6 -0.1881 -4.9384 -2.8348 16 7 -0.7113 -3.9965 -1.8717 17 6 -1.5409 -3.0457 -2.3453 18 8 -2.0794 -2.2715 -1.5777 19 6 -1.7957 -2.9442 -3.7953 20 6 -2.4987 -1.9535 -4.4173 21 7 -2.4952 -2.2380 -5.7491 22 6 -3.0365 -1.6004 -6.8301 23 6 -2.8640 -2.1331 -8.0637 24 6 -2.1351 -3.3238 -8.2031 25 7 -1.6244 -3.9166 -7.1507 26 6 -1.7865 -3.4013 -5.9213 27 7 -1.3676 -3.8089 -4.7354 28 6 -0.4368 -3.9689 -0.4573 29 1 -1.3072 -4.3319 0.0893 30 6 -0.1371 -2.5258 0.0042 31 1 -0.4851 0.8400 -0.0004 32 1 2.5644 -3.8417 -0.8863 33 1 2.5359 -3.8563 0.8984 34 1 2.1370 -6.2714 -0.6746 35 1 0.4256 -6.7101 -0.7741 36 1 1.9307 -4.8196 -2.5959 37 1 1.3228 -6.4377 -2.9960 38 1 -0.0499 -4.4273 -3.7875 39 1 -0.9125 -5.7415 -2.9706 40 1 -2.9682 -1.1042 -3.9432 41 1 -3.5946 -0.6847 -6.7025 42 1 -3.2829 -1.6455 -8.9316 43 1 -1.9929 -3.7544 -9.1834 44 1 -0.5243 -2.3641 1.0103 45 1 -0.5830 -1.8120 -0.6883 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001050084925.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:37 Heat of formation + Delta-G solvation = 119.281538 kcal Electronic energy + Delta-G solvation = -30823.631755 eV Core-core repulsion = 26844.184598 eV Total energy + Delta-G solvation = -3979.447158 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -44.14950 -41.86408 -39.54233 -38.69560 -37.02425 -35.70022 -34.64309 -33.75812 -32.21889 -31.30677 -30.52154 -28.88995 -27.34358 -26.47632 -25.47453 -24.56306 -23.89954 -23.28935 -22.39573 -20.88955 -19.47622 -19.33806 -18.70719 -18.66211 -17.69769 -17.60118 -17.28321 -16.92609 -16.61513 -16.22435 -15.75125 -15.71742 -15.33730 -15.15767 -15.02961 -14.93798 -14.35084 -13.91486 -13.79824 -13.77116 -13.60537 -13.40551 -13.18709 -13.01231 -12.87967 -12.70311 -12.58138 -12.15460 -12.11672 -11.85099 -11.68685 -11.46958 -11.34043 -11.22461 -10.89562 -10.63712 -10.44042 -10.14144 -9.49771 -9.21892 -8.80870 -7.69329 -5.16327 -0.51010 -0.01527 0.93034 1.24485 1.40756 1.45765 1.52142 2.00586 2.29873 2.49098 2.49855 2.58785 3.28239 3.36103 3.48584 3.60678 3.69343 3.70739 3.88622 3.93913 4.04163 4.09872 4.14252 4.18529 4.34221 4.53819 4.60846 4.64759 4.67580 4.70723 4.75217 4.89839 4.93558 4.95966 5.13371 5.17853 5.20008 5.32500 5.38229 5.43060 5.46757 5.51655 5.53615 5.85652 6.06346 6.32533 6.42875 6.58788 6.77647 7.13537 7.24241 7.84359 8.47435 9.29688 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010860 B = 0.004346 C = 0.003480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2577.650477 B = 6441.309055 C = 8043.180659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.065 4.065 3 Si 0.978 3.022 4 H -0.292 1.292 5 H -0.276 1.276 6 H -0.279 1.279 7 C -0.250 4.250 8 H 0.078 0.922 9 N -0.624 5.624 10 C 0.136 3.864 11 C -0.088 4.088 12 H 0.093 0.907 13 C -0.097 4.097 14 C -0.122 4.122 15 C 0.098 3.902 16 N -0.567 5.567 17 C 0.569 3.431 18 O -0.543 6.543 19 C -0.002 4.002 20 C -0.011 4.011 21 N -0.403 5.403 22 C 0.096 3.904 23 C -0.183 4.183 24 C 0.189 3.811 25 N -0.479 5.479 26 C 0.362 3.638 27 N -0.470 5.470 28 C 0.136 3.864 29 H 0.061 0.939 30 C 0.136 3.864 31 H 0.244 0.756 32 H 0.025 0.975 33 H 0.025 0.975 34 H 0.088 0.912 35 H 0.081 0.919 36 H 0.043 0.957 37 H 0.106 0.894 38 H 0.113 0.887 39 H 0.061 0.939 40 H 0.210 0.790 41 H 0.213 0.787 42 H 0.221 0.779 43 H 0.230 0.770 44 H -0.024 1.024 45 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.496 -8.945 -20.861 23.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.259 4.259 3 Si 0.806 3.194 4 H -0.218 1.218 5 H -0.202 1.202 6 H -0.205 1.205 7 C -0.379 4.379 8 H 0.096 0.904 9 N -0.350 5.350 10 C 0.011 3.989 11 C -0.107 4.107 12 H 0.111 0.889 13 C -0.134 4.134 14 C -0.160 4.160 15 C -0.024 4.024 16 N -0.297 5.297 17 C 0.356 3.644 18 O -0.421 6.421 19 C -0.133 4.133 20 C -0.147 4.147 21 N -0.080 5.080 22 C -0.033 4.033 23 C -0.205 4.205 24 C 0.003 3.997 25 N -0.193 5.193 26 C 0.012 3.988 27 N -0.196 5.196 28 C 0.031 3.969 29 H 0.079 0.921 30 C 0.011 3.989 31 H 0.053 0.947 32 H 0.043 0.957 33 H 0.042 0.958 34 H 0.106 0.894 35 H 0.100 0.900 36 H 0.062 0.938 37 H 0.125 0.875 38 H 0.130 0.870 39 H 0.079 0.921 40 H 0.226 0.774 41 H 0.230 0.770 42 H 0.238 0.762 43 H 0.246 0.754 44 H -0.006 1.006 45 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -6.792 -9.874 -20.028 23.340 hybrid contribution -0.438 2.544 0.758 2.690 sum -7.230 -7.331 -19.270 21.848 Atomic orbital electron populations 1.70230 1.05995 1.24760 1.57322 1.25716 0.96613 1.00968 1.02576 0.85173 0.77116 0.78981 0.78148 1.21796 1.20180 1.20494 1.19366 0.90792 0.83919 1.43855 0.90383 1.44632 1.02462 1.01059 1.86840 1.21499 0.94934 0.84806 0.97703 1.21291 0.92810 0.95496 1.01111 0.88878 1.20549 1.03513 0.95951 0.93434 1.21155 0.96006 1.01559 0.97246 1.21702 0.95755 0.92366 0.92612 1.46540 1.45215 1.29996 1.07998 1.17518 0.80389 0.80873 0.85625 1.90809 1.51070 1.42665 1.57526 1.20601 1.03254 0.95846 0.93605 1.22677 1.07340 1.03646 0.81043 1.43950 1.36065 1.20568 1.07414 1.23261 0.95962 0.99481 0.84599 1.22503 1.02170 0.98017 0.97828 1.24418 0.86918 0.90754 0.97659 1.68106 1.23632 1.32469 0.95083 1.22472 0.96772 0.85367 0.94183 1.70862 1.24540 1.28080 0.96092 1.21021 0.97441 0.98091 0.80313 0.92125 1.22224 0.83996 0.94701 0.97939 0.94678 0.95744 0.95755 0.89366 0.90041 0.93772 0.87538 0.86999 0.92106 0.77365 0.76985 0.76230 0.75358 1.00566 0.86428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -61.18 10.17 21.65 0.22 -60.96 16 2 C -0.07 -4.02 5.48 84.86 0.47 -3.55 16 3 Si 0.98 48.93 29.55 68.60 2.03 50.96 16 4 H -0.29 -14.52 7.11 99.48 0.71 -13.82 16 5 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 6 H -0.28 -13.43 7.11 99.48 0.71 -12.72 16 7 C -0.25 -15.38 10.25 84.03 0.86 -14.51 16 8 H 0.08 4.57 7.83 -2.91 -0.02 4.55 16 9 N -0.62 -35.91 3.39 -695.55 -2.36 -38.27 16 10 C 0.14 6.19 6.74 86.62 0.58 6.77 16 11 C -0.09 -3.30 2.96 -11.43 -0.03 -3.34 16 12 H 0.09 3.18 8.14 -2.39 -0.02 3.16 16 13 C -0.10 -2.74 5.10 29.32 0.15 -2.59 16 14 C -0.12 -3.65 5.84 29.59 0.17 -3.47 16 15 C 0.10 3.46 5.25 86.30 0.45 3.92 16 16 N -0.57 -24.38 3.09 -813.02 -2.51 -26.89 16 17 C 0.57 26.44 6.96 86.71 0.60 27.04 16 18 O -0.54 -29.03 13.91 -4.03 -0.06 -29.08 16 19 C 0.00 -0.06 6.56 40.76 0.27 0.21 16 20 C -0.01 -0.36 11.48 83.61 0.96 0.60 16 21 N -0.40 -10.09 2.93 -356.81 -1.05 -11.13 16 22 C 0.10 1.16 11.05 83.30 0.92 2.09 16 23 C -0.18 -1.02 10.06 22.13 0.22 -0.80 16 24 C 0.19 1.96 11.27 85.30 0.96 2.92 16 25 N -0.48 -11.29 10.48 -197.16 -2.07 -13.35 16 26 C 0.36 10.91 8.90 261.35 2.33 13.24 16 27 N -0.47 -17.13 7.47 -188.82 -1.41 -18.54 16 28 C 0.14 6.15 3.22 45.71 0.15 6.30 16 29 H 0.06 2.68 8.14 -2.38 -0.02 2.66 16 30 C 0.14 7.84 4.67 86.79 0.41 8.25 16 31 H 0.24 15.55 8.31 -92.71 -0.77 14.78 16 32 H 0.02 1.11 6.70 -2.39 -0.02 1.09 16 33 H 0.02 1.08 8.14 -2.38 -0.02 1.06 16 34 H 0.09 2.12 8.10 -2.39 -0.02 2.10 16 35 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 36 H 0.04 1.51 7.10 -2.38 -0.02 1.49 16 37 H 0.11 2.44 8.14 -2.39 -0.02 2.42 16 38 H 0.11 4.34 4.57 -21.39 -0.10 4.24 16 39 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 40 H 0.21 6.00 8.06 -2.91 -0.02 5.98 16 41 H 0.21 0.86 8.06 -2.91 -0.02 0.83 16 42 H 0.22 -1.16 8.06 -2.91 -0.02 -1.18 16 43 H 0.23 0.01 8.06 -2.91 -0.02 -0.01 16 44 H -0.02 -1.51 8.14 -2.38 -0.02 -1.52 16 45 H 0.12 7.46 2.99 -2.96 -0.01 7.45 16 Total: -1.00 -93.46 352.95 3.20 -90.26 By element: Atomic # 1 Polarization: 13.01 SS G_CDS: 0.94 Total: 13.95 kcal Atomic # 6 Polarization: 33.60 SS G_CDS: 9.47 Total: 43.07 kcal Atomic # 7 Polarization: -159.97 SS G_CDS: -9.17 Total: -169.15 kcal Atomic # 8 Polarization: -29.03 SS G_CDS: -0.06 Total: -29.08 kcal Atomic # 14 Polarization: 48.93 SS G_CDS: 2.03 Total: 50.96 kcal Total: -93.46 3.20 -90.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050084925.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 209.538 kcal (2) G-P(sol) polarization free energy of solvation -93.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.257 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds