Wall clock time and date at job start Sat Apr 11 2020 06:20:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86800 * 120.00175 * 2 1 4 4 H 1.48504 * 109.46793 * 270.00184 * 3 2 1 5 5 H 1.48494 * 109.47094 * 29.99864 * 3 2 1 6 6 H 1.48497 * 109.47266 * 150.00074 * 3 2 1 7 7 C 1.38806 * 119.99638 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99893 * 179.97438 * 7 2 1 9 9 N 1.36939 * 120.00189 * 0.02562 * 7 2 1 10 10 C 1.47107 * 125.64627 * 180.02562 * 9 7 2 11 11 C 1.55029 * 107.12485 * 180.17486 * 10 9 7 12 12 H 1.08993 * 112.15829 * 216.40312 * 11 10 9 13 13 C 1.52971 * 107.59849 * 92.89839 * 11 10 9 14 14 C 1.52722 * 110.87765 * 194.02996 * 13 11 10 15 15 C 1.53435 * 107.91284 * 64.54645 * 14 13 11 16 16 N 1.46797 * 107.31828 * 300.85218 * 15 14 13 17 17 C 1.34774 * 119.52056 * 232.83733 * 16 15 14 18 18 O 1.21447 * 120.00313 * 7.33245 * 17 16 15 19 19 C 1.48637 * 119.99878 * 187.33646 * 17 16 15 20 20 N 1.33507 * 120.60318 * 7.29026 * 19 17 16 21 21 C 1.30812 * 122.65539 * 179.97438 * 20 19 17 22 22 N 1.34053 * 123.37689 * 0.02562 * 21 20 19 23 23 H 0.97002 * 120.21099 * 179.97438 * 22 21 20 24 24 C 1.36859 * 119.57852 * 359.97438 * 22 21 20 25 25 N 1.31634 * 135.96744 * 180.02562 * 24 22 21 26 26 C 1.33517 * 110.83960 * 179.71902 * 25 24 22 27 27 C 1.36077 * 110.93096 * 0.43098 * 26 25 24 28 28 C 1.39545 * 120.60140 * 187.27260 * 19 17 16 29 29 C 1.45013 * 120.95462 * 52.56087 * 16 15 14 30 30 H 1.09004 * 109.86813 * 192.81142 * 29 16 15 31 31 C 1.47672 * 125.64623 * 0.02562 * 9 7 2 32 32 H 0.97002 * 119.99699 * 359.97438 * 1 2 3 33 33 H 1.08999 * 109.91046 * 60.79871 * 10 9 7 34 34 H 1.09006 * 109.90334 * 299.54887 * 10 9 7 35 35 H 1.08996 * 109.19743 * 314.39165 * 13 11 10 36 36 H 1.08998 * 109.19504 * 73.71623 * 13 11 10 37 37 H 1.09007 * 109.67839 * 183.57090 * 14 13 11 38 38 H 1.09003 * 109.68041 * 304.07653 * 14 13 11 39 39 H 1.09002 * 109.25997 * 181.80347 * 15 14 13 40 40 H 1.08999 * 110.64515 * 60.68518 * 15 14 13 41 41 H 1.07997 * 118.31139 * 179.97438 * 21 20 19 42 42 H 1.08003 * 124.53911 * 180.29450 * 26 25 24 43 43 H 1.07993 * 126.72670 * 179.85228 * 27 26 25 44 44 H 1.09005 * 110.44823 * 84.73477 * 31 9 7 45 45 H 1.08997 * 110.45625 * 322.18824 * 31 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4478 2.6526 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3254 -2.3880 0.0005 10 6 1.9320 -3.7282 0.0016 11 6 0.7705 -4.7550 -0.0034 12 1 0.9985 -5.6365 0.5958 13 6 0.4780 -5.1154 -1.4610 14 6 -0.8590 -5.8432 -1.5839 15 6 -1.9672 -4.8688 -1.1637 16 7 -1.6889 -4.4604 0.2187 17 6 -2.6518 -4.5825 1.1537 18 8 -3.6919 -5.1485 0.8841 19 6 -2.4408 -4.0242 2.5150 20 7 -1.3684 -3.2759 2.7840 21 6 -1.1432 -2.7644 3.9668 22 7 -1.9605 -2.9413 5.0145 23 1 -1.7484 -2.5406 5.8721 24 6 -3.0961 -3.6907 4.8665 25 7 -4.0921 -4.0629 5.6425 26 6 -4.9676 -4.8102 4.9659 27 6 -4.5698 -4.9764 3.6752 28 6 -3.3601 -4.2725 3.5350 29 6 -0.3912 -3.9332 0.5938 30 1 -0.3036 -3.9026 1.6799 31 6 -0.1441 -2.5333 -0.0005 32 1 -0.4850 0.8401 0.0004 33 1 2.5399 -3.8598 0.8967 34 1 2.5462 -3.8583 -0.8895 35 1 0.4454 -4.2029 -2.0562 36 1 1.2723 -5.7602 -1.8370 37 1 -1.0182 -6.1463 -2.6188 38 1 -0.8588 -6.7227 -0.9399 39 1 -2.9303 -5.3768 -1.2126 40 1 -1.9761 -3.9936 -1.8133 41 1 -0.2526 -2.1698 4.1066 42 1 -5.8697 -5.2289 5.3872 43 1 -5.0844 -5.5353 2.9077 44 1 -0.5315 -2.4779 -1.0179 45 1 -0.6031 -1.7676 0.6249 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050085951.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:40 Heat of formation + Delta-G solvation = 122.873494 kcal Electronic energy + Delta-G solvation = -31051.045334 eV Core-core repulsion = 27071.753935 eV Total energy + Delta-G solvation = -3979.291399 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.93108 -40.18358 -38.61899 -38.07524 -35.23814 -35.00822 -32.86707 -32.01324 -30.44072 -29.37866 -28.98757 -27.32057 -26.15980 -25.02393 -23.85583 -23.33605 -22.11624 -21.19762 -20.58176 -19.95198 -18.84950 -18.33143 -17.69236 -16.93732 -16.59810 -16.16392 -15.76461 -15.70107 -14.93411 -14.72404 -14.67470 -14.15973 -13.85770 -13.74339 -13.21365 -13.15879 -12.97251 -12.89181 -12.44893 -12.27078 -12.16724 -12.03143 -11.65214 -11.52140 -11.13529 -10.98922 -10.90365 -10.77252 -10.39448 -10.31827 -10.16737 -9.99341 -9.83120 -9.74415 -9.61967 -8.99020 -8.68550 -8.50573 -8.15111 -7.84024 -6.85602 -5.68988 -3.10958 -0.23774 1.42827 2.18745 2.68308 3.06456 3.34205 3.40356 3.40637 3.41758 3.67950 3.83992 4.09241 4.43675 4.52905 4.77424 4.93286 5.02545 5.19957 5.21927 5.29715 5.42694 5.45207 5.51751 5.61350 5.70898 5.84385 5.90393 5.97313 6.04566 6.16292 6.22103 6.26491 6.28599 6.30274 6.39301 6.54176 6.62172 6.63171 6.78315 6.85165 7.01081 7.04909 7.37350 7.48858 7.59459 7.81432 7.87787 7.94224 8.29538 8.34129 9.17315 9.78434 10.43537 11.33633 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010696 B = 0.004748 C = 0.003642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2617.243416 B = 5895.255721 C = 7685.940350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.008 4.008 3 Si 0.910 3.090 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.220 4.220 8 H 0.077 0.923 9 N -0.600 5.600 10 C 0.142 3.858 11 C -0.112 4.112 12 H 0.072 0.928 13 C -0.112 4.112 14 C -0.129 4.129 15 C 0.107 3.893 16 N -0.562 5.562 17 C 0.562 3.438 18 O -0.529 6.529 19 C 0.204 3.796 20 N -0.484 5.484 21 C 0.355 3.645 22 N -0.519 5.519 23 H 0.426 0.574 24 C 0.253 3.747 25 N -0.523 5.523 26 C 0.054 3.946 27 C -0.196 4.196 28 C -0.158 4.158 29 C 0.079 3.921 30 H 0.148 0.852 31 C 0.163 3.837 32 H 0.251 0.749 33 H 0.022 0.978 34 H 0.024 0.976 35 H 0.072 0.928 36 H 0.056 0.944 37 H 0.070 0.930 38 H 0.064 0.936 39 H 0.089 0.911 40 H 0.077 0.923 41 H 0.224 0.776 42 H 0.164 0.836 43 H 0.150 0.850 44 H 0.007 0.993 45 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.048 -9.173 6.327 11.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.204 4.204 3 Si 0.741 3.259 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.348 4.348 8 H 0.095 0.905 9 N -0.326 5.326 10 C 0.015 3.985 11 C -0.132 4.132 12 H 0.090 0.910 13 C -0.150 4.150 14 C -0.167 4.167 15 C -0.014 4.014 16 N -0.291 5.291 17 C 0.348 3.652 18 O -0.406 6.406 19 C 0.069 3.931 20 N -0.204 5.204 21 C 0.074 3.926 22 N -0.122 5.122 23 H 0.265 0.735 24 C 0.000 4.000 25 N -0.244 5.244 26 C -0.089 4.089 27 C -0.220 4.220 28 C -0.170 4.170 29 C -0.026 4.026 30 H 0.164 0.836 31 C 0.038 3.962 32 H 0.061 0.939 33 H 0.040 0.960 34 H 0.042 0.958 35 H 0.091 0.909 36 H 0.075 0.925 37 H 0.089 0.911 38 H 0.083 0.917 39 H 0.108 0.892 40 H 0.095 0.905 41 H 0.240 0.760 42 H 0.181 0.819 43 H 0.168 0.832 44 H 0.025 0.975 45 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -2.300 -8.939 6.469 11.271 hybrid contribution 0.302 0.851 -0.109 0.910 sum -1.998 -8.088 6.359 10.481 Atomic orbital electron populations 1.69832 1.04738 1.24598 1.57483 1.24739 0.95622 0.97457 1.02584 0.86154 0.78513 0.83652 0.77631 1.21748 1.21805 1.20765 1.19051 0.90407 0.82351 1.43039 0.90520 1.44428 1.01690 0.99667 1.86854 1.21483 0.93399 0.85714 0.97880 1.22488 0.97065 0.97622 0.96002 0.90969 1.21518 0.96061 1.00566 0.96820 1.21858 0.95565 0.98084 1.01208 1.21796 0.99437 0.98431 0.81782 1.47425 1.13085 1.60280 1.08340 1.17875 0.84057 0.80073 0.83212 1.90722 1.27185 1.42825 1.79844 1.21377 0.88202 0.89726 0.93839 1.68351 1.20304 1.14614 1.17167 1.25327 0.93453 0.92554 0.81286 1.41951 1.16761 1.38485 1.15018 0.73511 1.20519 0.90186 0.96768 0.92569 1.69493 1.02759 1.18750 1.33408 1.22581 0.97844 0.96929 0.91501 1.21508 0.96234 1.05773 0.98527 1.20797 0.99153 1.04538 0.92498 1.23407 0.78965 0.95987 1.04208 0.83625 1.21902 0.84497 0.91783 0.98048 0.93865 0.95984 0.95762 0.90943 0.92517 0.91117 0.91738 0.89219 0.90528 0.75976 0.81901 0.83242 0.97498 0.87027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.04 10.10 55.49 0.56 -24.48 16 2 C -0.01 -0.22 5.49 -17.43 -0.10 -0.31 16 3 Si 0.91 20.75 29.55 -169.99 -5.02 15.72 16 4 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 7 C -0.22 -5.64 10.28 -15.06 -0.15 -5.80 16 8 H 0.08 1.91 7.83 -52.48 -0.41 1.50 16 9 N -0.60 -13.97 3.40 -169.88 -0.58 -14.55 16 10 C 0.14 2.71 6.64 -2.64 -0.02 2.69 16 11 C -0.11 -1.84 3.56 -88.87 -0.32 -2.16 16 12 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 13 C -0.11 -1.69 4.67 -26.89 -0.13 -1.81 16 14 C -0.13 -1.73 6.12 -26.65 -0.16 -1.89 16 15 C 0.11 1.67 6.18 -3.65 -0.02 1.64 16 16 N -0.56 -9.73 2.73 -166.06 -0.45 -10.18 16 17 C 0.56 10.16 7.64 -11.97 -0.09 10.07 16 18 O -0.53 -10.24 14.79 5.41 0.08 -10.16 16 19 C 0.20 3.41 6.62 -82.36 -0.55 2.86 16 20 N -0.48 -7.31 6.04 -10.67 -0.06 -7.37 16 21 C 0.36 3.83 12.24 -91.01 -1.11 2.72 16 22 N -0.52 -5.21 5.32 -12.02 -0.06 -5.27 16 23 H 0.43 2.59 8.93 -40.82 -0.36 2.22 16 24 C 0.25 3.67 8.72 -154.20 -1.34 2.33 16 25 N -0.52 -8.08 11.16 -10.91 -0.12 -8.21 16 26 C 0.05 0.79 11.70 -17.60 -0.21 0.58 16 27 C -0.20 -3.11 10.26 -39.45 -0.40 -3.52 16 28 C -0.16 -2.59 6.19 -104.64 -0.65 -3.24 16 29 C 0.08 1.41 2.38 -67.47 -0.16 1.25 16 30 H 0.15 2.58 4.15 -80.86 -0.34 2.24 16 31 C 0.16 3.65 5.03 -2.84 -0.01 3.63 16 32 H 0.25 6.76 8.31 -40.82 -0.34 6.42 16 33 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.02 0.47 7.76 -51.93 -0.40 0.07 16 35 H 0.07 1.27 7.25 -51.93 -0.38 0.89 16 36 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.09 1.36 6.92 -51.93 -0.36 1.00 16 40 H 0.08 1.24 7.62 -51.93 -0.40 0.84 16 41 H 0.22 1.54 8.06 -52.49 -0.42 1.11 16 42 H 0.16 1.83 8.06 -52.48 -0.42 1.40 16 43 H 0.15 2.34 7.41 -52.49 -0.39 1.95 16 44 H 0.01 0.18 6.96 -51.93 -0.36 -0.18 16 45 H 0.11 2.82 5.90 -51.93 -0.31 2.51 16 LS Contribution 353.98 15.07 5.33 5.33 Total: -1.00 -33.33 353.98 -11.55 -44.88 By element: Atomic # 1 Polarization: 11.02 SS G_CDS: -5.80 Total: 5.23 kcal Atomic # 6 Polarization: 14.47 SS G_CDS: -5.42 Total: 9.05 kcal Atomic # 7 Polarization: -69.33 SS G_CDS: -0.72 Total: -70.05 kcal Atomic # 8 Polarization: -10.24 SS G_CDS: 0.08 Total: -10.16 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -33.33 -11.55 -44.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050085951.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.755 kcal (2) G-P(sol) polarization free energy of solvation -33.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 134.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.881 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds