Wall clock time and date at job start Sat Apr 11 2020 06:20:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86800 * 120.00175 * 2 1 4 4 H 1.48504 * 109.46793 * 270.00184 * 3 2 1 5 5 H 1.48494 * 109.47094 * 29.99864 * 3 2 1 6 6 H 1.48497 * 109.47266 * 150.00074 * 3 2 1 7 7 C 1.38806 * 119.99638 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99893 * 179.97438 * 7 2 1 9 9 N 1.36939 * 120.00189 * 0.02562 * 7 2 1 10 10 C 1.47107 * 125.64627 * 180.02562 * 9 7 2 11 11 C 1.55029 * 107.12485 * 180.17486 * 10 9 7 12 12 H 1.08993 * 112.15829 * 216.40312 * 11 10 9 13 13 C 1.52971 * 107.59849 * 92.89839 * 11 10 9 14 14 C 1.52722 * 110.87765 * 194.02996 * 13 11 10 15 15 C 1.53435 * 107.91284 * 64.54645 * 14 13 11 16 16 N 1.46797 * 107.31828 * 300.85218 * 15 14 13 17 17 C 1.34774 * 119.52056 * 232.83733 * 16 15 14 18 18 O 1.21447 * 120.00313 * 7.33245 * 17 16 15 19 19 C 1.48637 * 119.99878 * 187.33646 * 17 16 15 20 20 N 1.33507 * 120.60318 * 7.29026 * 19 17 16 21 21 C 1.30812 * 122.65539 * 179.97438 * 20 19 17 22 22 N 1.34053 * 123.37689 * 0.02562 * 21 20 19 23 23 H 0.97002 * 120.21099 * 179.97438 * 22 21 20 24 24 C 1.36859 * 119.57852 * 359.97438 * 22 21 20 25 25 N 1.31634 * 135.96744 * 180.02562 * 24 22 21 26 26 C 1.33517 * 110.83960 * 179.71902 * 25 24 22 27 27 C 1.36077 * 110.93096 * 0.43098 * 26 25 24 28 28 C 1.39545 * 120.60140 * 187.27260 * 19 17 16 29 29 C 1.45013 * 120.95462 * 52.56087 * 16 15 14 30 30 H 1.09004 * 109.86813 * 192.81142 * 29 16 15 31 31 C 1.47672 * 125.64623 * 0.02562 * 9 7 2 32 32 H 0.97002 * 119.99699 * 359.97438 * 1 2 3 33 33 H 1.08999 * 109.91046 * 60.79871 * 10 9 7 34 34 H 1.09006 * 109.90334 * 299.54887 * 10 9 7 35 35 H 1.08996 * 109.19743 * 314.39165 * 13 11 10 36 36 H 1.08998 * 109.19504 * 73.71623 * 13 11 10 37 37 H 1.09007 * 109.67839 * 183.57090 * 14 13 11 38 38 H 1.09003 * 109.68041 * 304.07653 * 14 13 11 39 39 H 1.09002 * 109.25997 * 181.80347 * 15 14 13 40 40 H 1.08999 * 110.64515 * 60.68518 * 15 14 13 41 41 H 1.07997 * 118.31139 * 179.97438 * 21 20 19 42 42 H 1.08003 * 124.53911 * 180.29450 * 26 25 24 43 43 H 1.07993 * 126.72670 * 179.85228 * 27 26 25 44 44 H 1.09005 * 110.44823 * 84.73477 * 31 9 7 45 45 H 1.08997 * 110.45625 * 322.18824 * 31 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4478 2.6526 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3254 -2.3880 0.0005 10 6 1.9320 -3.7282 0.0016 11 6 0.7705 -4.7550 -0.0034 12 1 0.9985 -5.6365 0.5958 13 6 0.4780 -5.1154 -1.4610 14 6 -0.8590 -5.8432 -1.5839 15 6 -1.9672 -4.8688 -1.1637 16 7 -1.6889 -4.4604 0.2187 17 6 -2.6518 -4.5825 1.1537 18 8 -3.6919 -5.1485 0.8841 19 6 -2.4408 -4.0242 2.5150 20 7 -1.3684 -3.2759 2.7840 21 6 -1.1432 -2.7644 3.9668 22 7 -1.9605 -2.9413 5.0145 23 1 -1.7484 -2.5406 5.8721 24 6 -3.0961 -3.6907 4.8665 25 7 -4.0921 -4.0629 5.6425 26 6 -4.9676 -4.8102 4.9659 27 6 -4.5698 -4.9764 3.6752 28 6 -3.3601 -4.2725 3.5350 29 6 -0.3912 -3.9332 0.5938 30 1 -0.3036 -3.9026 1.6799 31 6 -0.1441 -2.5333 -0.0005 32 1 -0.4850 0.8401 0.0004 33 1 2.5399 -3.8598 0.8967 34 1 2.5462 -3.8583 -0.8895 35 1 0.4454 -4.2029 -2.0562 36 1 1.2723 -5.7602 -1.8370 37 1 -1.0182 -6.1463 -2.6188 38 1 -0.8588 -6.7227 -0.9399 39 1 -2.9303 -5.3768 -1.2126 40 1 -1.9761 -3.9936 -1.8133 41 1 -0.2526 -2.1698 4.1066 42 1 -5.8697 -5.2289 5.3872 43 1 -5.0844 -5.5353 2.9077 44 1 -0.5315 -2.4779 -1.0179 45 1 -0.6031 -1.7676 0.6249 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001050085951.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:39 Heat of formation + Delta-G solvation = 103.627300 kcal Electronic energy + Delta-G solvation = -31051.879912 eV Core-core repulsion = 27071.753935 eV Total energy + Delta-G solvation = -3980.125976 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.04420 -41.53156 -39.70335 -39.52850 -36.63252 -36.28523 -34.36540 -33.57524 -31.58117 -31.01900 -30.13716 -28.88500 -27.52235 -26.57000 -25.19460 -24.48915 -23.39226 -22.56900 -21.85366 -21.44348 -20.09179 -19.43228 -18.91385 -18.74790 -17.70447 -17.47458 -17.12271 -16.92326 -16.49237 -16.15465 -15.95521 -15.65802 -15.20157 -15.02325 -14.53701 -14.49122 -14.27045 -14.06932 -13.92081 -13.64998 -13.48994 -13.44191 -13.14555 -12.97216 -12.73275 -12.68696 -12.27285 -12.15848 -12.01198 -11.71289 -11.64170 -11.53150 -11.39760 -11.29498 -10.81883 -10.66397 -10.18076 -9.72008 -9.55853 -8.98513 -8.73975 -7.65599 -5.09541 -1.36927 0.35975 1.24574 1.38055 1.52186 1.54561 1.62027 1.78108 2.27216 2.48356 2.56555 2.72298 2.97878 3.44189 3.46163 3.63767 3.76310 3.91757 3.98252 4.04466 4.08427 4.13668 4.24536 4.31055 4.40662 4.52935 4.57879 4.79809 4.86499 4.92094 4.92398 4.97087 5.04257 5.07519 5.18469 5.22423 5.30626 5.39170 5.51318 5.56875 5.60189 5.65634 5.78831 5.96428 5.99883 6.28222 6.44859 6.51166 6.81946 6.93447 7.21277 7.89272 8.53635 9.34400 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010696 B = 0.004748 C = 0.003642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2617.243416 B = 5895.255721 C = 7685.940350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C -0.057 4.057 3 Si 0.969 3.031 4 H -0.298 1.298 5 H -0.297 1.297 6 H -0.266 1.266 7 C -0.227 4.227 8 H 0.082 0.918 9 N -0.616 5.616 10 C 0.138 3.862 11 C -0.104 4.104 12 H 0.101 0.899 13 C -0.109 4.109 14 C -0.117 4.117 15 C 0.102 3.898 16 N -0.563 5.563 17 C 0.556 3.444 18 O -0.550 6.550 19 C 0.193 3.807 20 N -0.514 5.514 21 C 0.374 3.626 22 N -0.495 5.495 23 H 0.449 0.551 24 C 0.254 3.746 25 N -0.537 5.537 26 C 0.058 3.942 27 C -0.221 4.221 28 C -0.183 4.183 29 C 0.091 3.909 30 H 0.158 0.842 31 C 0.179 3.821 32 H 0.241 0.759 33 H 0.036 0.964 34 H 0.025 0.975 35 H 0.040 0.960 36 H 0.081 0.919 37 H 0.095 0.905 38 H 0.076 0.924 39 H 0.092 0.908 40 H 0.060 0.940 41 H 0.267 0.733 42 H 0.192 0.808 43 H 0.142 0.858 44 H -0.033 1.033 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.445 -10.003 7.789 12.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.250 4.250 3 Si 0.799 3.201 4 H -0.226 1.226 5 H -0.224 1.224 6 H -0.191 1.191 7 C -0.356 4.356 8 H 0.100 0.900 9 N -0.343 5.343 10 C 0.013 3.987 11 C -0.123 4.123 12 H 0.119 0.881 13 C -0.146 4.146 14 C -0.155 4.155 15 C -0.020 4.020 16 N -0.292 5.292 17 C 0.342 3.658 18 O -0.428 6.428 19 C 0.057 3.943 20 N -0.235 5.235 21 C 0.092 3.908 22 N -0.100 5.100 23 H 0.292 0.708 24 C 0.000 4.000 25 N -0.259 5.259 26 C -0.084 4.084 27 C -0.245 4.245 28 C -0.196 4.196 29 C -0.014 4.014 30 H 0.173 0.827 31 C 0.053 3.947 32 H 0.051 0.949 33 H 0.054 0.946 34 H 0.043 0.957 35 H 0.059 0.941 36 H 0.099 0.901 37 H 0.114 0.886 38 H 0.094 0.906 39 H 0.110 0.890 40 H 0.078 0.922 41 H 0.282 0.718 42 H 0.209 0.791 43 H 0.160 0.840 44 H -0.015 1.015 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -0.652 -9.777 7.965 12.628 hybrid contribution -0.166 1.156 -0.563 1.296 sum -0.818 -8.621 7.402 11.392 Atomic orbital electron populations 1.70090 1.05982 1.24404 1.58866 1.25410 0.96268 1.00194 1.03156 0.85216 0.77938 0.80033 0.76925 1.22630 1.22389 1.19110 1.19391 0.90885 0.83455 1.41865 0.90037 1.44648 1.02238 1.00752 1.86637 1.21650 0.94374 0.84381 0.98290 1.22520 0.94943 0.97587 0.97274 0.88096 1.21473 0.97878 0.99813 0.95455 1.21804 0.93367 0.97331 1.02951 1.21905 1.00729 0.98454 0.80909 1.47484 1.12808 1.60021 1.08892 1.18209 0.83737 0.79806 0.84049 1.90692 1.27795 1.43821 1.80522 1.21177 0.89221 0.90730 0.93179 1.68160 1.20314 1.15425 1.19560 1.26059 0.93723 0.90934 0.80047 1.41921 1.15034 1.37017 1.16031 0.70778 1.20678 0.90946 0.96759 0.91629 1.69542 1.03273 1.19456 1.33606 1.23033 0.98406 0.96062 0.90947 1.21566 0.96807 1.06914 0.99190 1.21018 0.99593 1.05451 0.93490 1.23185 0.79838 0.93680 1.04690 0.82662 1.21522 0.83983 0.93846 0.95343 0.94869 0.94647 0.95710 0.94097 0.90059 0.88618 0.90554 0.89014 0.92168 0.71770 0.79082 0.84003 1.01480 0.89966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -52.75 10.10 21.65 0.22 -52.53 16 2 C -0.06 -3.01 5.49 84.86 0.47 -2.54 16 3 Si 0.97 42.70 29.55 68.60 2.03 44.73 16 4 H -0.30 -13.46 7.11 99.48 0.71 -12.76 16 5 H -0.30 -13.25 7.11 99.48 0.71 -12.54 16 6 H -0.27 -10.94 7.11 99.48 0.71 -10.24 16 7 C -0.23 -11.58 10.28 84.03 0.86 -10.72 16 8 H 0.08 3.99 7.83 -2.91 -0.02 3.97 16 9 N -0.62 -28.69 3.40 -691.37 -2.35 -31.04 16 10 C 0.14 5.08 6.64 86.96 0.58 5.65 16 11 C -0.10 -3.22 3.56 -9.66 -0.03 -3.25 16 12 H 0.10 2.63 8.14 -2.39 -0.02 2.61 16 13 C -0.11 -3.09 4.67 30.49 0.14 -2.95 16 14 C -0.12 -2.92 6.12 30.65 0.19 -2.73 16 15 C 0.10 3.18 6.18 86.47 0.53 3.72 16 16 N -0.56 -19.68 2.73 -797.63 -2.17 -21.86 16 17 C 0.56 20.47 7.64 87.02 0.66 21.14 16 18 O -0.55 -21.92 14.79 -3.55 -0.05 -21.97 16 19 C 0.19 6.46 6.62 41.98 0.28 6.74 16 20 N -0.51 -15.07 6.04 -187.67 -1.13 -16.21 16 21 C 0.37 7.18 12.24 180.48 2.21 9.39 16 22 N -0.50 -8.72 5.32 -191.95 -1.02 -9.74 16 23 H 0.45 3.97 8.93 -92.71 -0.83 3.14 16 24 C 0.25 7.03 8.72 136.29 1.19 8.21 16 25 N -0.54 -15.86 11.16 -188.44 -2.10 -17.96 16 26 C 0.06 1.64 11.70 83.93 0.98 2.62 16 27 C -0.22 -7.08 10.26 22.36 0.23 -6.85 16 28 C -0.18 -6.00 6.19 -19.88 -0.12 -6.13 16 29 C 0.09 3.22 2.38 46.08 0.11 3.33 16 30 H 0.16 5.34 4.15 -59.52 -0.25 5.10 16 31 C 0.18 8.20 5.03 86.52 0.43 8.64 16 32 H 0.24 13.41 8.31 -92.71 -0.77 12.64 16 33 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.02 0.92 7.76 -2.38 -0.02 0.90 16 35 H 0.04 1.43 7.25 -2.39 -0.02 1.41 16 36 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 37 H 0.10 1.94 8.14 -2.38 -0.02 1.93 16 38 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 39 H 0.09 2.82 6.92 -2.39 -0.02 2.80 16 40 H 0.06 2.06 7.62 -2.39 -0.02 2.04 16 41 H 0.27 2.67 8.06 -2.91 -0.02 2.64 16 42 H 0.19 4.01 8.06 -2.91 -0.02 3.98 16 43 H 0.14 4.63 7.41 -2.91 -0.02 4.60 16 44 H -0.03 -1.72 6.96 -2.38 -0.02 -1.74 16 45 H 0.08 4.29 5.90 -2.39 -0.01 4.27 16 Total: -1.00 -74.78 353.98 2.10 -72.67 By element: Atomic # 1 Polarization: 19.66 SS G_CDS: -0.01 Total: 19.64 kcal Atomic # 6 Polarization: 25.56 SS G_CDS: 8.71 Total: 34.27 kcal Atomic # 7 Polarization: -140.77 SS G_CDS: -8.57 Total: -149.34 kcal Atomic # 8 Polarization: -21.92 SS G_CDS: -0.05 Total: -21.97 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 2.03 Total: 44.73 kcal Total: -74.78 2.10 -72.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050085951.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 176.300 kcal (2) G-P(sol) polarization free energy of solvation -74.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.672 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds